Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00839 ATGGCAGAGCCGACGGTCGAATCGTCCAGAGCCGACCGAAGTACGACATTCGCTGGCCGTTGGATCGACGAGGAACGTCCCTCTCTGTATCGACGGCCAGGATTGAATTTGGCGTCCCTGCCAGATGCGATGACGGACAAAGATCCTTGGCCGTTGGATCGAGCGAGGGACGTGCCTCGGATCGACGGCCAGGATTTAATCCGCCTGGCGAAGACGGATGTCGATCCTTGTCCGTTGGATCCTCGCCTGGATCGAACGGTCAGTAGTGACTCCAAATTAATTGGGTCAGGATGTAATCGGTTTGAAGTAAGCGATGGTAACGAACGTTACGCAGTCGATCTGGACACGCGTACCTGTAATTGTAACCGATGGGAGCTGATTGGAATCCCATGCGTGCATGCCATCCCTTGCATCAATTTTATGCGGACTTCAGCGGAGGATTATGTGCATGCATGGTACCATAGGGACACATATGAGGATGTATTCCCATTTTACCCGTCCTGTCAGTGGCCACCACATGTGGCCTGCAACGAACCAGCCTCCAATTTTGCCACCACCAGTAAAGAGACTCCTGGGTCGGCCTCGAAACGAAGAGTGCGAGATGCAGACGAGCCCCGTAGTAGCACGGTGGGGCCTTTGGGAGTGGCTGAACAGGTGGGGCCTCTGGGAGTGGCTGAACTGGGGCCTCTGGTCGTTTTGGTTATGACGGACGTCCGTCATGGTCCGACGGACGCCGTCCAGATGCTGATGACGTGTTATTTAAAGACGGATGTCCGTGATATTGAAGAGGAGATCCGCGCATTACAGCTTGATTCTGCAGACGACAATAATGGGGTCACAAATTTAGAGGAGGCAAAAGCAGAAGTTGAGAAATCTGATGATTTGAAGGAAGATTGGATAGACCATGCTCATGCCAAATCAATTGATCCTATTGCTGTTGAAGAAAAAAGTGAAGTTTTGGTGAAAGAGGACATTCCTAGTATAGAAAAGGAAGACTCTCCTCCGGAAGAAGAGTTAACTGAAGCATCAGAGTCGAATAAGAAGAGACATTTAAACGTTGTCTTTATTGGCCATGTTGATGCTGGTAAATCCACTATTGGAGGTCAAATACTTTTTATTAGTGGTATGGTAGATGATCGGACAATCCAAAAGTATGAAAGAGAAGCAAAAGAGAAAAGCAGAGAAAGCTGTAATGGATTGCTATATGGGTATTATGGGTTTGTAAGGAGGCAGTATATAACTAGAGGATACGAGGAGTTGCAGATGTATATGGCCTATATTATGGACACCAACGAGGAGGAGAGAGCTAAGGGAAAAACTGTTGAAGTTGGAAGAGCATCTTTTGAAACAACATCTACAAGATTTACAATTTTGGATGCTCCAGGTCACAAAAGTTATGTCCCAAATATGATCAGTGGTGCATCCCAGGCGGATATTGGATTGCTGGTACTTTCTGCTCGCAAAGGAGAATTCGAAACTGGATATGAGAGGGGCGGACAGACACGTGAGCATGTGCTTCTTGCCAAAACATTGGGCATATCTAAGCTTCTGGTTGTAGTTAACAAGATGGACGATCCAACGGTTAATTGGTCAAAAGAAAGGTATGATGAAATAGAATCAAAGATGGCGCCATTTTTAAGGTCGTCAGGCTACAATGTGAAGAAAGATGTACAATTTCTACCAATATCTGGTCTGCTTGGATTGAACATGAAAGCGAGAATGGATAAAAAAATATGTCCATGGTGGAATGGTCCCTGTCTATTTGAAGTTCTTGATGTAGTCGAAGGCCCTATGAGAGATCCAAAAGGTCCATTTAGGATGCCAATAATTGATAAATTTAAAGAGATGGGAACGACAGTTATGGGCAAAGTTGAATCTGGGAGTGTGCGTGAGGGTGACTCTTTGTTGATAATGCCAAACAAGGTTCAAGTGAAAGTTCTTGCTGTATTCTGTGATGAAGACAAAGTTGTGCGTGCTGGACCTGGGGAAAATTTGAGAATTAGATTATCTGGTGTTGAGGAAGAGGACATATTGTCGGGATTTGTCTTGTCAAGTGCTGTGAAACCAATACCTTCTGTTAATGAGTTTGTTGCACAGTTGCAGATTCTTGAATTGCTGGACAATGCAATTTTTACTGCTGGATATAAAGCTGTCTTGCACATTCATTCTATTGTTGAGGAGTGTGAGATTTTGGAGCTTCTACAACAGATTGATCCAAAGACAAAAAAACCCATCAAAAAGAAAATTCTTTTTGTGAAGAATGGTGCTGTAGTTGTATGCCGAGTCCAGGTGAATAATTTAATATGCATCGAAAAATTTTCCGACTTTGCTCAGCTTGGAAGGTTCACTCTTCGCACAGAAGGAAAGACAGTTGCAGTGGGAAAGGTACGTGGAATTGGAGATGAAATTGCAATAGTATTGCATTCCGTCCCAGCAAATCTACATGATGAGGATGAGGAGGACCTCCGTTCATTATGCCAATTCAGTAGTGACGAAGACATGAATATGGCCGAGAGTAAACCTAGAAGTCCAACACAAGCAGAAGGCAGCTTCCTTGGTTTGAGCCTTGACAAAAAGTATAGTTCACTGAATAAAATTAGAGAAGAAATTGTCGATCATGCGTTGAAGAATGGATACGGGATAAAATGCCACTTGAAGGGAGCGACTTCGGGCCAGCTGCTCACTGCTGTCACCATTGATGGGAACGATGAAATGTATAAGATTGTTGAAGCAGTGGTTGAAGCAGAAAATAGAGTTTCATGGAGCTGGTTTCTAGAATTGTTTCTCGACAATCTAAACACCCCATCTGGCAATGGATGGATAATCATTTCTGACTGA 2838 44.43 MAEPTVESSRADRSTTFAGRWIDEERPSLYRRPGLNLASLPDAMTDKDPWPLDRARDVPRIDGQDLIRLAKTDVDPCPLDPRLDRTVSSDSKLIGSGCNRFEVSDGNERYAVDLDTRTCNCNRWELIGIPCVHAIPCINFMRTSAEDYVHAWYHRDTYEDVFPFYPSCQWPPHVACNEPASNFATTSKETPGSASKRRVRDADEPRSSTVGPLGVAEQVGPLGVAELGPLVVLVMTDVRHGPTDAVQMLMTCYLKTDVRDIEEEIRALQLDSADDNNGVTNLEEAKAEVEKSDDLKEDWIDHAHAKSIDPIAVEEKSEVLVKEDIPSIEKEDSPPEEELTEASESNKKRHLNVVFIGHVDAGKSTIGGQILFISGMVDDRTIQKYEREAKEKSRESCNGLLYGYYGFVRRQYITRGYEELQMYMAYIMDTNEEERAKGKTVEVGRASFETTSTRFTILDAPGHKSYVPNMISGASQADIGLLVLSARKGEFETGYERGGQTREHVLLAKTLGISKLLVVVNKMDDPTVNWSKERYDEIESKMAPFLRSSGYNVKKDVQFLPISGLLGLNMKARMDKKICPWWNGPCLFEVLDVVEGPMRDPKGPFRMPIIDKFKEMGTTVMGKVESGSVREGDSLLIMPNKVQVKVLAVFCDEDKVVRAGPGENLRIRLSGVEEEDILSGFVLSSAVKPIPSVNEFVAQLQILELLDNAIFTAGYKAVLHIHSIVEECEILELLQQIDPKTKKPIKKKILFVKNGAVVVCRVQVNNLICIEKFSDFAQLGRFTLRTEGKTVAVGKVRGIGDEIAIVLHSVPANLHDEDEEDLRSLCQFSSDEDMNMAESKPRSPTQAEGSFLGLSLDKKYSSLNKIREEIVDHALKNGYGIKCHLKGATSGQLLTAVTIDGNDEMYKIVEAVVEAENRVSWSWFLELFLDNLNTPSGNGWIIISD 945
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9082701 9097364 - BLOR13751 Blo04g00839 59867

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00839 945 CDD eRF3_C_III 691 796 - -
Blo04g00839 945 CDD eRF3_II 604 685 - -
Blo04g00839 945 Gene3D Translation factors 692 799 - -
Blo04g00839 945 Pfam Elongation factor Tu GTP binding domain 348 579 IPR000795 GO:0003924|GO:0005525
Blo04g00839 945 Pfam Elongation factor Tu C-terminal domain 690 799 IPR004160 -
Blo04g00839 945 PANTHER BNAA06G12300D PROTEIN 222 396 - -
Blo04g00839 945 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 348 602 IPR000795 GO:0003924|GO:0005525
Blo04g00839 945 PANTHER TRANSLATION FACTOR 423 819 - -
Blo04g00839 945 SMART 26again6 117 144 IPR006564 GO:0008270
Blo04g00839 945 Gene3D - 330 596 IPR027417 -
Blo04g00839 945 PANTHER TRANSLATION FACTOR 222 396 - -
Blo04g00839 945 CDD EF1_alpha 352 597 - -
Blo04g00839 945 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 694 798 IPR009001 -
Blo04g00839 945 SUPERFAMILY Translation proteins 597 686 IPR009000 -
Blo04g00839 945 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 429 444 IPR031157 -
Blo04g00839 945 Gene3D Translation factors 602 686 - -
Blo04g00839 945 PRINTS GTP-binding elongation factor signature 516 525 IPR000795 GO:0003924|GO:0005525
Blo04g00839 945 PRINTS GTP-binding elongation factor signature 352 365 IPR000795 GO:0003924|GO:0005525
Blo04g00839 945 PRINTS GTP-binding elongation factor signature 456 466 IPR000795 GO:0003924|GO:0005525
Blo04g00839 945 PRINTS GTP-binding elongation factor signature 472 483 IPR000795 GO:0003924|GO:0005525
Blo04g00839 945 ProSiteProfiles Zinc finger SWIM-type profile. 110 142 IPR007527 GO:0008270
Blo04g00839 945 PANTHER BNAA06G12300D PROTEIN 423 819 - -
Blo04g00839 945 MobiDBLite consensus disorder prediction 182 214 - -
Blo04g00839 945 MobiDBLite consensus disorder prediction 324 345 - -
Blo04g00839 945 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 339 608 IPR027417 -
Blo04g00839 945 Pfam SWIM zinc finger 107 135 IPR007527 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00839 K03267 ERF3, GSPT; peptide chain release factor subunit 3 - vvi:100249117 787.334
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00839 Blo16g00126 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00839 Blo-Chr4:9082701 Blo12g00113 Blo-Chr12:8034008 1.17E-16 dispersed
Blo13g00934 Blo-Chr13:31801448 Blo04g00839 Blo-Chr4:9082701 1.44E-23 dispersed
Blo02g00456 Blo-Chr2:6455391 Blo04g00839 Blo-Chr4:9082701 5.31E-47 transposed
Blo16g00126 Blo-Chr16:2862452 Blo04g00839 Blo-Chr4:9082701 9.85E-74 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g246 Blo04g00839 Blo16g00126 . . . Bpe13g00367 Bma06g00055 . Cmo13g01039 Cmo18g00045 . . . . . Cpe20g00140 . . . . . . . . . . . . . . . . . . . Lsi02g00219 Csa01g00700 Chy12g01412 Cme12g01846 . . Bda11g01780 . . Bpe15g00536 Bma03g00904 . Sed08g2749 . . Cma13g01003 Cma18g00058 Car13g00838 Car18g00051 Cpe09g01124 Cpe18g00872 Bhi08g01272 Tan05g2214 Cmetu12g0241 Lac10g0273 . . . Cla04g01062 Cam04g1105 Cec01g1619 Cco01g1666 Clacu04g1130 Cmu04g1114 Cre01g1415 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004032 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00839 Blo_Chr04 FPKM 681.491699 714.69574 5.352407 5.466293 13.72611 7.802938 8.627122 0.0 0.221601 0.0