Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00840 ATGGCGAAGAATAACGGTGATATTCTGATGCTCGAAGCTCCACCTCAGCCAAAATGGACGGGTTATGTGAACGCTGAGATAATAGACGCCTTGCCTTACATCGACGATGACTACGCTGACCCTAGGGTCAAAGCAGAAGTTGATCGCTTGGTCGAGGACGAGATGCGACGTAGCTATAAGAAGCCGTCTGATTTTCTCAAAGACTTGCCCCCTGTTCCGAAGTTTAATTTCGAGGACCATCCCATGATTGCGAGAGAGTATGAACGTGTCAGGGCTGGGAGGCCTCCTGTGCCACTTGATATTGCACGATATAAATTAGAAACCCCTTCTGTAAATAAAAGGAATGATGAAACTGCATGGAAATTGGCACTTCAAAAAGCTCAATGCTTACTTCGGCATCAAGTTCTCAGGCAAGAAAATTTAGAACTGATGTCAAAATATGGTCCTGATATCTGGAAGCAACACAACCAAAGATTAGAAGCATTTTTGTCAAGAATGCAAAAATTAGCTCAAGAACAAAATGACAATATTGAAACAGTGAACCGTGAAAGGAAATATCATCAGAAAAATGCTGCAAGTGAGCTTAATGCTTTATCCACACAATGGATGCAGCTTTGCTACAAAAATATTGACATTCAAGGTGCATGTGCTGAAATAGACAATCATATCCTGGCATTTAAGAAAGAGGCAGCTGAGAGGGAAAAAAGCTCTTCCAACATTACCATTTCGCTCGTCCACTTAAGACGGCAGAGCTTTCTTGCGTTCTGTTTTTGTGTGAAATTATCTCGCACAGCTGCTGAACCTTTTTTCCTATTGGCGGGTCCAAATGTGATTGAATCTGAGGAGCACATTTTTCGAATGGCAAAGCACATAAAGGCCATCGCATCAAAGGTTAGATTACCTCTGGTATTCAAATCAAGCTTTGATAAAGCCAATAGAACATCCTCAAAATCATTCCGTGGTCCTGGCATAATTGAAGGCTTAAAGATCCTTGAGAAGGTTAAAATTGCGTATGACATCCCAATAGTGACTGATGTGCACGAAACTGTACAGTGTGAGTCAGTAGGTAAAGTTGCAGATATTATTCAGATTCCTGCATTTTTATGTCGCCAGACCGATCTTCTAATTGCAGCAGCAAAGACCGGGAAAATAATAAATATAAAAAAAGGCCAGTTTTGTGCTCCTTCCGTCATGACAAATTCTGCTGAGAAGATTAGATTGGCTGGAAATCCAAATGTGATGGTTTGCGAGAGAGGAAATATGTTTGGCTATAATGATTTGATTGTCGATCCTCGTAATTTTGAGTGGATGAGAGCGGCAAATTGTCCTGTGGTTGCTGATATTACTCACTCTCTGCAACAGCCTGCTGGAAAAAAGTTAATACATTTTCTCTTTTCCCGAGCCCCCGCTACCTTTCAGTCATTAATGAACAACATTTTTCGGCCTTACTTGCGAAAATTCGTATTGGTCTTCTTTGACGACATTCTAATCTACAGCAAGGATATATCTGCTCATTGTGACCATTTGGAAATAGTTTTCGAACTGTTGTGGCAACATTCTCTTTTTTTGGATGGCGGAGGTGTTGCCAGTGGAGGGCTTCGGGAATTAATACCATGCATTGCCAGGACTGCTGTGACTGTTGGAGTTGATGGAATTTTTATGGAGGTGCATGATGATCCATTGAATGCCCCCGTTGATGGTCCAACCCAATGGCCTCTTCGTCATTTGGAGGAATTGCTGGAAGAGCTTGTGGCCATTGCGAGGGTCAGCAAGGGGAAGCAGCAGTTCAACATTGATTTGACACCGTTTCGTGATTAA 1818 42.13 MAKNNGDILMLEAPPQPKWTGYVNAEIIDALPYIDDDYADPRVKAEVDRLVEDEMRRSYKKPSDFLKDLPPVPKFNFEDHPMIAREYERVRAGRPPVPLDIARYKLETPSVNKRNDETAWKLALQKAQCLLRHQVLRQENLELMSKYGPDIWKQHNQRLEAFLSRMQKLAQEQNDNIETVNRERKYHQKNAASELNALSTQWMQLCYKNIDIQGACAEIDNHILAFKKEAAEREKSSSNITISLVHLRRQSFLAFCFCVKLSRTAAEPFFLLAGPNVIESEEHIFRMAKHIKAIASKVRLPLVFKSSFDKANRTSSKSFRGPGIIEGLKILEKVKIAYDIPIVTDVHETVQCESVGKVADIIQIPAFLCRQTDLLIAAAKTGKIINIKKGQFCAPSVMTNSAEKIRLAGNPNVMVCERGNMFGYNDLIVDPRNFEWMRAANCPVVADITHSLQQPAGKKLIHFLFSRAPATFQSLMNNIFRPYLRKFVLVFFDDILIYSKDISAHCDHLEIVFELLWQHSLFLDGGGVASGGLRELIPCIARTAVTVGVDGIFMEVHDDPLNAPVDGPTQWPLRHLEELLEELVAIARVSKGKQQFNIDLTPFRD 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9121131 9136679 - BLOR13752 Blo04g00840 59868

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00840 605 SUPERFAMILY Aldolase 524 592 - -
Blo04g00840 605 Coils Coil 163 190 - -
Blo04g00840 605 Pfam DAHP synthetase I family 267 459 IPR006218 GO:0009058
Blo04g00840 605 SUPERFAMILY Aldolase 266 458 - -
Blo04g00840 605 TIGRFAM KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 268 458 IPR006269 GO:0005737|GO:0008676
Blo04g00840 605 Hamap 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 263 593 IPR006269 GO:0005737|GO:0008676
Blo04g00840 605 SUPERFAMILY DNA/RNA polymerases 465 523 IPR043502 -
Blo04g00840 605 Pfam Breast carcinoma amplified sequence 2 (BCAS2) 26 232 IPR008409 GO:0006397
Blo04g00840 605 PANTHER PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE 518 599 IPR006269 GO:0005737|GO:0008676
Blo04g00840 605 PANTHER PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE 263 475 IPR006269 GO:0005737|GO:0008676
Blo04g00840 605 Gene3D Aldolase class I 257 462 IPR013785 -
Blo04g00840 605 Gene3D Aldolase class I 500 599 IPR013785 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00840 K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] K12861 csv:101218284 375.941
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00840 Blo-Chr4:9121131 Blo06g01059 Blo-Chr6:33962532 4.06E-06 dispersed
Blo16g00125 Blo-Chr16:2807003 Blo04g00840 Blo-Chr4:9121131 1.61E-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g245 Blo04g00840 . . . . . . . Cmo13g01037 Cmo18g00046 . . . . . Cpe20g00141 . . . . . . . . . . . . . . . Cone2ag0749 . . . Lsi02g00220 Csa01g00702 Chy12g01410 Cme12g01844 . . . . . Bpe15g00522 Bma03g00906 . Sed01g1756 . . Cma13g01001 . Car13g00835 . Cpe09g01123 . Bhi08g01275 Tan05g2212 Cmetu12g2133 Lac10g0275 Hepe07g2366 . . Cla04g01061 Cam04g1104 Cec01g1618 Cco01g1665 Clacu04g1128 Cmu04g1112 Cre01g1414 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005783 5 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00840 Blo_Chr04 FPKM 18.525595 17.985109 23.308714 21.399158 6.546062 7.873388 6.69049 22.555269 21.488626 22.234436