Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00842 ATGACGGACGGACTTGTTCTTCGTGGTACAATGAGGGCTCACACCGATATGGTGACTGCAATTGCTACTCCGATTGACAACGTCGACATGATTGTTACCTCTTCCCGTGACAAATCGATCATCGTTTGGAATCTAACCAGGAGCGAGAAGACCTACGGTGTACCGCGCCGCCGTTTGACTGGACATTCTCATTTCGTTGAAGACGTCGTTCTCTCGTCCGACGGTCAATTTGCTCTCTCTGGCTCGTGGGACGGGGAGCTCCGCCTCTGGGACCTTGCTGCCGGTGTTTCTGCTCGGAGGTTCGTTGGACACACTAAAGACGTCCTCTCTGTTGCATTCTCTTATGACAACCGTCAGATCGTTTCGGCTTCTCGGGACCGTACGATCAAGCTGTGGAATACTTTGGGTGAATGCAAGTATACCATTCAGGAGGGAGATGCTCATTCGGATTGGGTCAGCTGTGTTAGATTTAGTCCTAATACCAACCAACCAACTATTGTTTCTGCCTCGTGGGATAAGACCGTTAAGGTCTGGAACTTGTCCAACTGCAAGTTGAGGAGCACTTTAGCTGGTCACGGTGGCTATGTGAACACAGTTGCTGTGTCGCCAGATGGGTCGCTGTGCGCAAGTGGAGGGAAGGACGGAGTGATTCTTCTGTGGGATTTAGCGGAGGGGAAAAGACTGTACTCGTTAGATGCGGGTTCTATTATTCATGCACTTTGTTTCAGTCCCAATAGATATTGGCTTTGCGCTGCAACTGAGAACAGCATAAAGATCTGGGATTTGGAAAGCAAGAGCATTGTCGAGGATTTGAAAGTTGATCTCAAGGCTGAAGCGGAGAAAACTGATGACACACATGCTGCGACTGCCAACAAGAGGAAGGTAGTGGGTATTGATGCTTATTCATGGCTTCACAAGGGAGCTTATTCATGTAGTATGGAGATTTGTCTTGATTCCGATAGTGATAGGAAATCACGCTACTTGGACTACTGTATGCATAGAATCGATCTTCTTCGCCATTACAAAATAGTTCCTGTTGTTGTATTTGATGGTGGGAATCTTCCTTGTAAGGCTTTGACTGAGCAAGAGAGACACAGGCATGTTTCTGTTGCTAGTAGAGAGTTAGCCATGGAGAAACTGAAAGAGGGAAATGTCAGTGCTGCAACTGAACTCTTTCAGCGAGCTGTAAGCATTACACCATCTATGGCACATAAACTCATTCAGCTCTTGAGAGCTCAAAACATTGAATTTGTGGTAGCTCCTTATGAGGCTGATGCACAGTTAGCGTATTTATCGAACCTTGAAGTAGAAAAAGGTGGAATTGCCGCTGTGATTACAGAGGATAGTGATCTGATTGCATATGGTTGCAAAGCTGTAGTGTTTAAGATGGACCGACATGGCAACGGCGAAGAGCTTTTGCTAGACAAAATTTTTGATTCTCCTACTTCCACCCCTTCCTTCCGAAATTTTGACATGGAGTTGTTTACAGGCATGTGTGTTTTAGCTGGCTGCGACTTTCTTCCGTCTGTTCCTGGAATTGGAATCGGAAAATCCTACGCATTGGTTTCGAAGTATCGGAATCTACCCCGTGTTCTATCAATTCTAAAGTTAGAGAAAAGAAATCAAATGCCAGAAGCTTACGCAAGGTCTTTCAAAGAAGCCATGGCTGTTTTTCGGCATGCTCAAATATATGATATTAACACGAAAAACCTTAGACATCTGACACCAGTTGCTCAATGCCTTGACGAGTTCCTCAATGGAGAGCTCGATTTCTTGGGACCAGAAATCCCTGCTTCAATAGCTTGTTCAGTTGCCGAAGGCAAAGTAGACCCTGTAACCTTGGAAGCCTTTAATCCTTCCCCAAGTTCCGGATGTTATTCAGACGACTCCAAAACCAAATGTATGGTTAGATTTCTCAGATCCGAGGCTTCCGCTGTGCCTGAACAAGAGAGCTGCTTTGCAGTCGTTCCGGCCCCTAAAGTCGTACAAAGACGTAAGCTAAGAAAGCGGAAACCAACTTCGAAGGTTAAGTATTTAAACGAAGCCTCAGCACTCGAGAAGTTGATTGCTCCAACCGAGATCGATGGTACAGTAAGAAATGGAAAGGTCAATGAGATTTTGTCATTACAGATTCCTGACAACAACCCATTCAAGAGAAAGTCAGGCAGTGAAATCCTCGTGGATTGTGTGGAGAGTGCCTCCGAAGAAAAATCGGTGGCGGATGAAGTTGAATATATGGATGTTCCATTTTCCGGGAAAAGAAAATGCGAGAAAGTTGACTCAGATGAGACCGAGTCAGGAGTGACGCAGGCAGAAGATGGAACGAGATTGGAATCGCAGGAGAGCGTAACTTCTGATATGGGTAAAATCACAGGGGGGAGGAAGAGGGAGAATACGAAGAAACAGAAGACAATTAGTTGCGAGGGTTTAGAGACTAAACGAGGTACCATCTTCAACTTTTTCTCCAGAGTGTAG 2475 45.66 MTDGLVLRGTMRAHTDMVTAIATPIDNVDMIVTSSRDKSIIVWNLTRSEKTYGVPRRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSARRFVGHTKDVLSVAFSYDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHSDWVSCVRFSPNTNQPTIVSASWDKTVKVWNLSNCKLRSTLAGHGGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGSIIHALCFSPNRYWLCAATENSIKIWDLESKSIVEDLKVDLKAEAEKTDDTHAATANKRKVVGIDAYSWLHKGAYSCSMEICLDSDSDRKSRYLDYCMHRIDLLRHYKIVPVVVFDGGNLPCKALTEQERHRHVSVASRELAMEKLKEGNVSAATELFQRAVSITPSMAHKLIQLLRAQNIEFVVAPYEADAQLAYLSNLEVEKGGIAAVITEDSDLIAYGCKAVVFKMDRHGNGEELLLDKIFDSPTSTPSFRNFDMELFTGMCVLAGCDFLPSVPGIGIGKSYALVSKYRNLPRVLSILKLEKRNQMPEAYARSFKEAMAVFRHAQIYDINTKNLRHLTPVAQCLDEFLNGELDFLGPEIPASIACSVAEGKVDPVTLEAFNPSPSSGCYSDDSKTKCMVRFLRSEASAVPEQESCFAVVPAPKVVQRRKLRKRKPTSKVKYLNEASALEKLIAPTEIDGTVRNGKVNEILSLQIPDNNPFKRKSGSEILVDCVESASEEKSVADEVEYMDVPFSGKRKCEKVDSDETESGVTQAEDGTRLESQESVTSDMGKITGGRKRENTKKQKTISCEGLETKRGTIFNFFSRV 824
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9171425 9180301 + BLOR13754 Blo04g00842 59870

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00842 824 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 189 226 - -
Blo04g00842 824 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 59 92 - -
Blo04g00842 824 PANTHER RECEPTOR FOR ACTIVATED PROTEIN KINASE C RACK1 1 308 IPR045223 GO:0015935|GO:0043022
Blo04g00842 824 PRINTS G protein beta WD-40 repeat signature 208 222 IPR020472 -
Blo04g00842 824 PRINTS G protein beta WD-40 repeat signature 120 134 IPR020472 -
Blo04g00842 824 PRINTS G protein beta WD-40 repeat signature 166 180 IPR020472 -
Blo04g00842 824 ProSitePatterns Trp-Asp (WD) repeats signature. 78 92 IPR019775 -
Blo04g00842 824 Pfam XPG I-region 414 505 IPR006086 GO:0004518
Blo04g00842 824 ProSitePatterns XPG protein signature 2. 414 428 IPR019974 GO:0016788
Blo04g00842 824 SMART xpgineu 411 487 IPR006086 GO:0004518
Blo04g00842 824 ProSitePatterns Trp-Asp (WD) repeats signature. 166 180 IPR019775 -
Blo04g00842 824 ProSitePatterns Trp-Asp (WD) repeats signature. 31 45 IPR019775 -
Blo04g00842 824 MobiDBLite consensus disorder prediction 756 803 - -
Blo04g00842 824 ProSitePatterns Trp-Asp (WD) repeats signature. 208 222 IPR019775 -
Blo04g00842 824 Gene3D - 272 481 - -
Blo04g00842 824 ProSiteProfiles TPR repeat profile. 369 402 IPR019734 GO:0005515
Blo04g00842 824 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 11 45 - -
Blo04g00842 824 Gene3D - 8 143 IPR015943 GO:0005515
Blo04g00842 824 SUPERFAMILY WD40 repeat-like 7 276 IPR036322 GO:0005515
Blo04g00842 824 CDD H3TH_FEN1-like 493 565 - -
Blo04g00842 824 Gene3D - 488 561 - -
Blo04g00842 824 Gene3D - 144 271 IPR015943 GO:0005515
Blo04g00842 824 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 101 133 - -
Blo04g00842 824 ProSiteProfiles Trp-Asp (WD) repeats profile. 101 133 IPR001680 GO:0005515
Blo04g00842 824 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 490 618 IPR036279 -
Blo04g00842 824 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 410 427 IPR006084 -
Blo04g00842 824 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 495 510 IPR006084 -
Blo04g00842 824 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 293 307 IPR006084 -
Blo04g00842 824 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 345 364 IPR006084 -
Blo04g00842 824 Pfam XPG N-terminal domain 292 366 IPR006085 GO:0004518
Blo04g00842 824 MobiDBLite consensus disorder prediction 768 787 - -
Blo04g00842 824 SMART xpgn3 257 371 IPR006085 GO:0004518
Blo04g00842 824 CDD PIN_EXO1 292 479 IPR044752 GO:0046872
Blo04g00842 824 ProSiteProfiles Trp-Asp (WD) repeats profile. 145 188 IPR001680 GO:0005515
Blo04g00842 824 ProSiteProfiles Trp-Asp (WD) repeats profile. 11 53 IPR001680 GO:0005515
Blo04g00842 824 SMART HhH_4 492 525 IPR008918 GO:0003677|GO:0003824
Blo04g00842 824 PANTHER BNAA06G12310D PROTEIN 1 308 - -
Blo04g00842 824 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 145 182 - -
Blo04g00842 824 SMART WD40_4 182 221 IPR001680 GO:0005515
Blo04g00842 824 SMART WD40_4 4 44 IPR001680 GO:0005515
Blo04g00842 824 SMART WD40_4 52 91 IPR001680 GO:0005515
Blo04g00842 824 SMART WD40_4 94 133 IPR001680 GO:0005515
Blo04g00842 824 SMART WD40_4 224 261 IPR001680 GO:0005515
Blo04g00842 824 SMART WD40_4 135 179 IPR001680 GO:0005515
Blo04g00842 824 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 100 IPR001680 GO:0005515
Blo04g00842 824 SUPERFAMILY PIN domain-like 291 505 IPR029060 -
Blo04g00842 824 CDD WD40 7 272 - -
Blo04g00842 824 Pfam WD domain, G-beta repeat 186 221 IPR001680 GO:0005515
Blo04g00842 824 Pfam WD domain, G-beta repeat 99 133 IPR001680 GO:0005515
Blo04g00842 824 Pfam WD domain, G-beta repeat 144 179 IPR001680 GO:0005515
Blo04g00842 824 Pfam WD domain, G-beta repeat 235 261 IPR001680 GO:0005515
Blo04g00842 824 Pfam WD domain, G-beta repeat 55 91 IPR001680 GO:0005515
Blo04g00842 824 ProSiteProfiles Trp-Asp (WD) repeats profile. 189 230 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00842 K10746 EXO1; exonuclease 1 [EC:3.1.-.-] K14753 qsu:112037099 628.246
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00842 Blo13g00177 CCT
Blo04g00842 Blo16g00123 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00842 Blo-Chr4:9171425 Blo06g00440 Blo-Chr6:25140231 7.76E-11 dispersed
Blo01g00921 Blo-Chr1:20744905 Blo04g00842 Blo-Chr4:9171425 1.13E-17 transposed
Blo01g01526 Blo-Chr1:54838315 Blo04g00842 Blo-Chr4:9171425 1.19E-14 transposed
Blo10g00205 Blo-Chr10:2600532 Blo04g00842 Blo-Chr4:9171425 8.49E-15 transposed
Blo11g00257 Blo-Chr11:2063182 Blo04g00842 Blo-Chr4:9171425 2.94E-73 transposed
Blo18g00682 Blo-Chr18:13862075 Blo04g00842 Blo-Chr4:9171425 1.65E-13 transposed
Blo16g00123 Blo-Chr16:2789563 Blo04g00842 Blo-Chr4:9171425 6.67E-12 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g236 Blo04g00842 Blo16g00123 . Bda15g00506 Bpe12g00703 Bpe13g00370 Bma06g00058 . . . Cma10g00321 Cma11g00302 Car10g00301 Car11g00276 Sed08g2632 . Cpe04g01381 Bhi02g00121 Tan09g1843 Cmetu09g0775 . Hepe09g0374 . . Cla06g01433 Cam06g1587 Cec06g1647 Cco06g1639 Clacu06g1548 Cmu06g1503 Cre06g2312 Cone2ag0750 . . . . . . . Blo13g00177 . . . . Bpe15g00520 Bma03g00908 Bma08g00007 . Cmo10g00344 Cmo11g00305 . . . . . . . . . . . . . . . . . . . . Lsi06g01300 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011036 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00842 Blo_Chr04 FPKM 5.852355 7.17769 8.553227 9.866317 6.93553 6.826585 7.046897 10.961972 10.321962 10.869261