Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00859 ATGGCTAGCGTCTCCTGCTCTCGTGCTTTCAAGGAGGAGACATGGAAAGACACTCTCCTTTTGTCATTTCAATGCCTGGGTGTAATTTTTGGTCAGCTAAGCACTGCTCCACTCTACTTGTTTGCAAGTATTGATCCAGAAAATATCAGTTCGGAAGATGAAGTTTATGAACATTTCTCCCTTATTTTCTGGACCTTGACCCTCATTTGTCTGCTCAAATATGCTCTTATTGTCCTCAATGCTGATAATGATGGAGAAGGTGGTATTTTTGCTCTCTATTCATTGTTGTGCCGCCATGCCAAAGTTGGTTTGCTTCCAAGCAAAAGGAGTGAAAGCGAGGTGATGAGTTATAGTTCAGAAACTGCTCCTAAGTTGAAGGTTGCATCAAGGACGATAAGAGCCATTGAAAATCACAGATGTTTTCACCATATAATGCTCGTCTTTGCTCTTCTTGGTTGCTGCATGACAATAAGTGAAGGAGTGCTTACTCCTGCCATTTCTGGTTTGTCACGTTCATCAAATTTTCAGCTAAATATAAGTACATGCTCTGCAATTTTTTGTTTGGATGTAGGGGTTCCTACTGCCTGCGTTATACTGGTCTGCCTTTTCATGTTGCAACATTTTGGAACTCATAAGATCGGGATTATTTTTGCGCCAGTTATTGCTGTTTGGCTGCTTCTTATCAGTGGACTTGGCATTTATAATATTTCCCTCTACAACCCAGACATAATTTATGCTGTCTTCCCCAAATACTTGTATAGATTTTTGAGAAAAGCCAACATTCATCAATGGAGATCCTTGGGCAGTGTCATCCTGTGCTCTGCAGGAGCGGAGGCAATGTTCTCAAATCTAGGCCATTTCTCGAAGAAATCCATTAAGCTGACCTTTATCTGCTTGGTTTATCCTCTTCTTATTCTGTGCTACGCTGGTCAATCTGCATTCATTTCAAAAAACTGCAATCTCAATGACTTCAATCATCTCCTCCAATCAGTGCCCAAGGGGGCTGCGCACCACATGTTTGTAGTGTTTGCCCTGTTTGCTTCAGTCATTGGAAGCCAAGCTACAATAACAGCCAGCTTTTCCATCATCAACCAGTGCTTTGCTCTTGGGTGTTTCCCTAGAGTGAAAGTTATTCATACATCGGATAAGATTCATGGGCAGATTTACATTCCTGATGTCAACTGGTTCTTGATGCTTTTCAGCCTCGCCGTCACCATTAGTTTCCGTAACATAGTGAAACTTGGCAGTGCCACTGGATTGGCTATAATTTCAGGCATGGTTGTAACAACGTGTTTGGCAACAGTTGTTATAGCTACGTACTGGGAGAAAAACTTATCACAAGCAGCATGCTTTCTGATATTCTTTGGATTCCTAGAAACGATTTATTTGACGGGCTCTCTTCTCAATTTCCATAGAGGAGGTTGGTTTTTGTTTGTTCTTTTAGCACTGTCTTTCACAGTAATGATTGCATGGCATTACGGGACGAAAAAGAAGTACGAGTATGATCAAGAAAACAAGGTCTCCACAGAATGGCTGATTGATCTTAGCCCCGGCCTCGGAGTTGCAAGAGTAGCTGGAATTGGCTTCATTCATTCCGATGTAGTCAGCGGAATTCCGGCTTTTTTCTCTCAGTTCATCACCAATTGTCCTGCTTTTCATCAAGTTTTGATCCTAGTGTCTTTCAAGCCTTTGCCAGTACCTTATCTCCCTACGAGTCAGCGGTATCTTATCGGCAGAATCGGGCCAAAAGATTACAAGATTTATCGCTGCATTGTTCGATATGGATATCGCGATCATGTCTGCACGAATGATTTTGAGGAACAAATCATTAGCTCGATTGTAGAATTCATTTCAGTGGAAGAAAATGAATCCGAACCAGAGACATCAACCGAAGCCAGAAGAATGGTTGCTATAGGGATGCCGCCTCGAGAAGGAAGTGCTCAAGTTTCTTCAAATAACTATGCAAACACAGTCGATGAAGTTGTGAGCTTCTCAGACAATGAACGCTCGATGGAGGATGGTGCTCTTACTCTGGCAAGGAGGAAGAAGGCAGTCCGGTTTGTGTTGCCACTGGAGGGCCGGACATTGGCGGTGCATGTGAGGGAAGAACTGGAGGGATTAGCGGAGGCGATGGAGAGTGGGACAGCATATTTTCTGGGGAAGACTCGTTTCAAGGCACGTGGGGATAACTCTAACATAATGAAGAGGTTGCTTATAATGGCGTATGTTTTCTTGGAAACAAATTGCAGAGAGACTTCTGTAGCTTTAAACATTCCTCGCGCTGCTGTCTTGGAGGTGGGGATGGTGTATCCAATCTAA 2319 43.12 MASVSCSRAFKEETWKDTLLLSFQCLGVIFGQLSTAPLYLFASIDPENISSEDEVYEHFSLIFWTLTLICLLKYALIVLNADNDGEGGIFALYSLLCRHAKVGLLPSKRSESEVMSYSSETAPKLKVASRTIRAIENHRCFHHIMLVFALLGCCMTISEGVLTPAISGLSRSSNFQLNISTCSAIFCLDVGVPTACVILVCLFMLQHFGTHKIGIIFAPVIAVWLLLISGLGIYNISLYNPDIIYAVFPKYLYRFLRKANIHQWRSLGSVILCSAGAEAMFSNLGHFSKKSIKLTFICLVYPLLILCYAGQSAFISKNCNLNDFNHLLQSVPKGAAHHMFVVFALFASVIGSQATITASFSIINQCFALGCFPRVKVIHTSDKIHGQIYIPDVNWFLMLFSLAVTISFRNIVKLGSATGLAIISGMVVTTCLATVVIATYWEKNLSQAACFLIFFGFLETIYLTGSLLNFHRGGWFLFVLLALSFTVMIAWHYGTKKKYEYDQENKVSTEWLIDLSPGLGVARVAGIGFIHSDVVSGIPAFFSQFITNCPAFHQVLILVSFKPLPVPYLPTSQRYLIGRIGPKDYKIYRCIVRYGYRDHVCTNDFEEQIISSIVEFISVEENESEPETSTEARRMVAIGMPPREGSAQVSSNNYANTVDEVVSFSDNERSMEDGALTLARRKKAVRFVLPLEGRTLAVHVREELEGLAEAMESGTAYFLGKTRFKARGDNSNIMKRLLIMAYVFLETNCRETSVALNIPRAAVLEVGMVYPI 772
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9439956 9444280 - BLOR13771 Blo04g00859 59887

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00859 772 Pfam K+ potassium transporter 23 598 IPR003855 GO:0015079|GO:0016020|GO:0071805
Blo04g00859 772 PANTHER POTASSIUM TRANSPORTER 10 770 - -
Blo04g00859 772 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 10 770 IPR003855 GO:0015079|GO:0016020|GO:0071805
Blo04g00859 772 TIGRFAM kup: potassium uptake protein 21 772 IPR003855 GO:0015079|GO:0016020|GO:0071805
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00859 K03549 kup; KUP system potassium uptake protein K12236 zju:107419568 926.391
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00859 Blo-Chr4:9439956 Blo13g00835 Blo-Chr13:31028278 0 dispersed
Blo04g00859 Blo-Chr4:9439956 Blo16g01154 Blo-Chr16:40057157 6.70E-159 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g164 Blo04g00859 . Bda06g00868 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda14g01150 Bpe07g01089 Bpe15g00501 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0021446 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 3
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00859 Blo_Chr04 FPKM 36.257942 37.075813 26.163265 25.503994 35.705742 36.851681 35.879894 11.937747 13.18982 13.518629