Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00860 ATGGAATTGGTCGAGAGTCAAATCCTAACATTGATTCTTCTATTACTCGACATGGGGGATCACAGAGGAAGAACAGCTCAAGAAGGTCGACCTACATACCAAAGGATGGCGCAGAACAGAGGGAAAGAGACTGATGAAGATTCTAGGAAGGTGTTCCAGGAGGCTAATCTACCCATGCTTGTTCAAGAACTTCAAGAGAAGCTGGTTAAGAGCACGGTTGAGTGCATGATTTGTTATGAATTGGCACGGAGATCAGCACCGATATGGTCTTGTTCCAGCTGTTATTCCATTTTTCATTTAAATTGTATCAGGAAATGGGCCCAGGCTCCCACATCCGTTGATTTGTTAGCAGAAAAAAATCAAGGTTTTAATTGGCGGTGTCCTGGGTGCCAATCTGTGCAACTAACATTGTCAAGGGAGATACAATACGTTTGCTTCTGTGGAAAGAGGCCGGACCCTCCTTCTGATTTGTATTTGACGCCACATTCATGTGGTGAACACTGTGGCAAAACACTTGAGAGGGAGATTACTGGTGCTAAAGGAAGTAAGGAGGATCTCTGCCCTCATATTTGTGTATTGCAGTGCCACCCTGGTCCATGCCCTCCTTGTAAGGCATTTGCCCCGCCTCGATTGTGCCCTTGTGGGAAAAAAACAATTACAACACGATGCTCAGAAAGGAAGTCTGATCTTACTTGTGGTCAACGCTGTAATAAACTTCTCAACTGCTTTCGTCATCGGTGTGAAAAAATATGCCATACAGGTCCTTGTGATTTTTGTCAACTTTTGGTCAATGCCTCTTGTTTCTGCAAGAAAAAGATGGAGGTTGTTCTTTGTGGAGATATGGCTGTCAAAGGTGAAGTGAATGCAACTGATGGTGTATTTTCATGTGATTCTACATGTGGAAGGATAATAAGTTGTGGTAATCATTTATGTGGTGCAATTTGTCATCCTGGTTCCTGCACGGACTGTGACTTTATGCCTGAAAAAATCAAGACATGTCGTTGTGGAAAAACAAGCTTGCAGGAGGAGCGGACAAGTTGTTTGGATCCAATTCCGACGTGTTCAGAACTCTGTGGAAAGTTACTACCTTGTGGATTACATCACTGTAAAGAGTTGTGCCATAGAGGAGACTGTTCACCCTGTTTGGTCCAAGTTTTGCAAAAATGTCGGTGTGGATTAACCTCTCGATCAGTGGAGTGCTACAAAACAGGAATTGCAACTGAGATATTAATTTGTGATAGAACTTGTGGGCAGAAGAAGAATTGTGGAAGACATCGGTGTAGTGAGAGATGCTGTCCTTTATCGGATTCAGGTAATCTTCTTTCTGGGGAATGGGATCCACACTTGTGCTCAATGCCCTGTGGAAAGAAATTAAGGTGTGGGCAGCATTCTTATTTTTACAATTCTTGTGAATCATTGTGCCACAGTGGTCATTGCCCTCCACGTCTTGAAACAATTTTCAGTGATTTGACTTGTGCGTGCACGAGGACTGCTCTTCTTCCCCCCTTACCATGTGGTACACCTAGACCTTCATGTCAACTTCCATGTTCAGTTCCCCAGCCTTGTGGGCACTTGTCTTCACATAGGTGCCACTTTGGAGATTGTCCCCCTTGTGGTGTTCCTATAGCAAAGGAGTGCATTGGCAGACATGTTGTTCTAAGAAATATTCCTTGTGGTTCACGGGATATCAGATGTAACAAGCTCTGTGGGAAAACAAGAAAGTGTGGCATGCATGCTTGTGGCAGAACATGTCACTTGCCACCTTGTGACACATTATCTGGATCTGAATCCGAATCTGACTCAGGTCAGAAAGCTTCATGTGGGCAGACCTGTGGTGCTCCTAGGAAAGATTGCAGACACACTTGTTGTGCGCCTTGTCATCCTCATTCTCCATGCCCTGATACGAGATGTAATGTCTCTGTTACAATTACGTGTTCTTGTGACAGAATAACAGCAACTGTTCCTTGTGGTGTTGGGCGCAGCTGTATTGGTTTTAATTCTGACACAGTGGTTGAAGCTTCTATCATTCAGAAGTTGCCAGTTCCCCTTCGACCTGTCGAAGGAAATGGCAGACAGATCCCTTTGGGTCAAAGGAAGCTTATGTGTGATGATGAATGTGCTAAGTTAGAGCGGAAACGCGCACTTGCAGATGCTTTTGATATCACCACACCTAGTCTGGAATCACTTCATTTTGGCGAGGATTCTAATGTTTCTGAATTAGTTGCAGACTTGTTTAGGCGGGATGGAAAGTGGGTTTTGTCTATTGAGGATAGATGCAAATTTTTGGTCCTTGGAAAGCACAGAGGAACAATAATGGGCGTTCGGTCACATGTTTTCTGTCCAATGGCCAAGGACAAGAGGGATACAGTGCGGCTAATTGCTGGTAGATGGAAGCTAGCAGTTACTTCTGCTGGTTGGGAACCTAAGCGATTTGTTGCAGTACATGTTACAACTAAATCAAAAGCCCCTGCACGCGTGCTTGGTGCCAAGGGCTCTATCACCATAAATACCCCTCATCCTACAGCTTTTGATCCTTTCGTAGACATGGATCCTAGGCTACTTGTTTCTTTTCCAGATTTGCCAAGGGAAGCAGACATAAGTGCACTGGTGCTGAGGTTTGGAGGGGAGTGTGAACTGGCGTGGTTGAATGACAAGAATGCATTGGCTATATTTAATGATACTGCCAGAGCAGCTACTGCATTGAGAAGGGTGGATCATGGTACGGTTTATCATGGAGCTGCTGTACTTCAAACAGTGGGTGTGTCCGCAACAACTTCTGGTGCTAATGCTTGGGGAAAGGGTGGGAATCCATGGAAGACAGCTGTAGTTGAGAACTCTTGTTGGAAGGAATGCTCATGGTCTGGTGCGTCTGCGGATGTTAATGAAGCTGTGTGGAAGAAAGAAGAAGCTCCAAATTTCTGCGACTATGAATCGGTGGCTTGTCCTTGA 2949 44.83 MELVESQILTLILLLLDMGDHRGRTAQEGRPTYQRMAQNRGKETDEDSRKVFQEANLPMLVQELQEKLVKSTVECMICYELARRSAPIWSCSSCYSIFHLNCIRKWAQAPTSVDLLAEKNQGFNWRCPGCQSVQLTLSREIQYVCFCGKRPDPPSDLYLTPHSCGEHCGKTLEREITGAKGSKEDLCPHICVLQCHPGPCPPCKAFAPPRLCPCGKKTITTRCSERKSDLTCGQRCNKLLNCFRHRCEKICHTGPCDFCQLLVNASCFCKKKMEVVLCGDMAVKGEVNATDGVFSCDSTCGRIISCGNHLCGAICHPGSCTDCDFMPEKIKTCRCGKTSLQEERTSCLDPIPTCSELCGKLLPCGLHHCKELCHRGDCSPCLVQVLQKCRCGLTSRSVECYKTGIATEILICDRTCGQKKNCGRHRCSERCCPLSDSGNLLSGEWDPHLCSMPCGKKLRCGQHSYFYNSCESLCHSGHCPPRLETIFSDLTCACTRTALLPPLPCGTPRPSCQLPCSVPQPCGHLSSHRCHFGDCPPCGVPIAKECIGRHVVLRNIPCGSRDIRCNKLCGKTRKCGMHACGRTCHLPPCDTLSGSESESDSGQKASCGQTCGAPRKDCRHTCCAPCHPHSPCPDTRCNVSVTITCSCDRITATVPCGVGRSCIGFNSDTVVEASIIQKLPVPLRPVEGNGRQIPLGQRKLMCDDECAKLERKRALADAFDITTPSLESLHFGEDSNVSELVADLFRRDGKWVLSIEDRCKFLVLGKHRGTIMGVRSHVFCPMAKDKRDTVRLIAGRWKLAVTSAGWEPKRFVAVHVTTKSKAPARVLGAKGSITINTPHPTAFDPFVDMDPRLLVSFPDLPREADISALVLRFGGECELAWLNDKNALAIFNDTARAATALRRVDHGTVYHGAAVLQTVGVSATTSGANAWGKGGNPWKTAVVENSCWKECSWSGASADVNEAVWKKEEAPNFCDYESVACP 982
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9445101 9449828 - BLOR13772 Blo04g00860 59888

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00860 982 SUPERFAMILY RING/U-box 63 135 - -
Blo04g00860 982 CDD NF-X1-zinc-finger 354 402 - -
Blo04g00860 982 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 38 969 - -
Blo04g00860 982 SMART znfxneu3 242 261 IPR000967 GO:0005634|GO:0008270
Blo04g00860 982 SMART znfxneu3 460 494 IPR000967 GO:0005634|GO:0008270
Blo04g00860 982 SMART znfxneu3 364 383 IPR000967 GO:0005634|GO:0008270
Blo04g00860 982 SMART znfxneu3 522 540 IPR000967 GO:0005634|GO:0008270
Blo04g00860 982 SMART znfxneu3 575 609 IPR000967 GO:0005634|GO:0008270
Blo04g00860 982 SMART znfxneu3 306 325 IPR000967 GO:0005634|GO:0008270
Blo04g00860 982 SMART znfxneu3 618 639 IPR000967 GO:0005634|GO:0008270
Blo04g00860 982 SMART znfxneu3 187 205 IPR000967 GO:0005634|GO:0008270
Blo04g00860 982 CDD NF-X1-zinc-finger 296 339 - -
Blo04g00860 982 ProSitePatterns Zinc finger PHD-type signature. 75 130 IPR019786 -
Blo04g00860 982 CDD NF-X1-zinc-finger 232 280 - -
Blo04g00860 982 ProSiteProfiles Zinc finger PHD-type profile. 72 133 IPR019787 -
Blo04g00860 982 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 38 969 IPR034078 GO:0003700
Blo04g00860 982 CDD RING-CH-C4HC3_NFX1 74 131 - -
Blo04g00860 982 MobiDBLite consensus disorder prediction 25 47 - -
Blo04g00860 982 ProSiteProfiles Zinc finger RING-type profile. 75 131 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00860 K12236 NFX1; transcriptional repressor NF-X1 - zju:107419567 1535.01
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00153 Blo-Chr4:1251660 Blo04g00860 Blo-Chr4:9445101 3.63E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g162 Blo04g00860 . . . . . Bma06g00071 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00250 . . . . . . . . . Bma03g00927 . . . . . . . . . . Bhi08g01330 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011037 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12309 None None None None Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00860 Blo_Chr04 FPKM 1.134591 0.991704 0.594859 0.881715 0.34813 0.335799 0.230984 3.095327 3.07702 2.663687