Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00863 ATGGGAAATTGCTTCAGAAGCCCCGCTCGGGCTCCTGTTTCTAACCACACCGCGTCTTCTACTCCAGGATTTTCGAGTAATTTTAGCAAAAGTTTAGGAGTTTCGGGGACGAGCAGCAGCGCCGTAATAAGCCAATTTTCTGATGCAGCGAGCATAGATATGACAGACCCTACCTCGAATGGGCAAATCTTAGTCACTTCCAACTTGAAGGTCTTCACGCTTTCTGAGCTTAAAGCTGCGACTAAGGGCTTCAAACCTGATTCGTTTCTCGGCGAGGGAGGCTTTGGGAAAGTTTACAAGGGCTGGGTAGATGAAAAATCACTTGCTCCTTCAAAGTCAGCTACTGCGATGGTGGTTGCTATCAAGAAATTGAACTCAGAAAGCGTGCAAGGTTTTCAAGAGTGGCAGGCGGAAGTGAACTTTCTAGGAAGGCTTTCTCACCCAAACCTCGTAAAGTTATTGGGATACTGTAGGGAGGATGCAGAGCTTCTTCTTGTTTACGAGTTCATGCCAAAGGGTAGCTTGGAGAATCATCTCTTTAGAAGGAATCCTTCCATCGAACCTCTTTCATGGGAAAACCGGCTTAAGATCGCAAGAGGAGCAGCCAAGGGCTTGGCTTTTTTGCATACTTCAGAGAAACAAGTTATATACAGAGATTTTAAGGCTTCTAATATACTTCTCGACGTGAATTACGACGCAAAAATCTCAGATTTTGGGTTGGCCAAAGCAGGGCCTTCAGGGGACGAATCACACGTGACGACCCGAATAATGGGGACGCAAGGCTACACTGCTCCAGAATACGCCTCCACGGGGCATTTGTACGTGCAGAGCGACGTCTACGGATTTGGCGTCGTGTTGCTCGAATTGCTGACCGGATTACGAGCTATGGATTCGAGAAGGCCGAGCGACGAGCGTAATCTGGTAAATTGGCTTATGCCAGTGTTGATCAAAAGAAAGAAGATCAAAACCATTATGGATCAGAGGATAGAAGGTCAGTATTCCTCCAAGGCATCATTACAGGTTGCAGACCTTACTGTTAAATGCCTCCAATCCGATCACAAAAATCGCCCCTCCATGAAAGAAGTGGTTGAAGCTTTGGAACAGATCGAGATGAAAGAAAGACCGAAACCGAAGAAGGTGGCCAAACTCATCACTGCGGCAAATTCTAATGCTGTTAAACTATGA 1185 46.41 MGNCFRSPARAPVSNHTASSTPGFSSNFSKSLGVSGTSSSAVISQFSDAASIDMTDPTSNGQILVTSNLKVFTLSELKAATKGFKPDSFLGEGGFGKVYKGWVDEKSLAPSKSATAMVVAIKKLNSESVQGFQEWQAEVNFLGRLSHPNLVKLLGYCREDAELLLVYEFMPKGSLENHLFRRNPSIEPLSWENRLKIARGAAKGLAFLHTSEKQVIYRDFKASNILLDVNYDAKISDFGLAKAGPSGDESHVTTRIMGTQGYTAPEYASTGHLYVQSDVYGFGVVLLELLTGLRAMDSRRPSDERNLVNWLMPVLIKRKKIKTIMDQRIEGQYSSKASLQVADLTVKCLQSDHKNRPSMKEVVEALEQIEMKERPKPKKVAKLITAANSNAVKL 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9504801 9506635 + BLOR13775 Blo04g00863 59891

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00863 394 Pfam Protein tyrosine and serine/threonine kinase 88 366 IPR001245 GO:0004672|GO:0006468
Blo04g00863 394 SUPERFAMILY Protein kinase-like (PK-like) 62 369 IPR011009 -
Blo04g00863 394 Gene3D Phosphorylase Kinase; domain 1 68 169 - -
Blo04g00863 394 CDD STKc_IRAK 90 369 - -
Blo04g00863 394 Gene3D Transferase(Phosphotransferase) domain 1 170 391 - -
Blo04g00863 394 MobiDBLite consensus disorder prediction 1 23 - -
Blo04g00863 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Blo04g00863 394 PANTHER OS01G0588500 PROTEIN-RELATED 31 377 - -
Blo04g00863 394 ProSiteProfiles Protein kinase domain profile. 84 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo04g00863 394 ProSitePatterns Protein kinases ATP-binding region signature. 90 123 IPR017441 GO:0005524
Blo04g00863 394 PANTHER SERINE/THREONINE-PROTEIN KINASE PIX13-RELATED 31 377 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00863 - - - pvy:116127793 531.561
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00863 Blo-Chr4:9504801 Blo13g00474 Blo-Chr13:25624794 1.16E-150 dispersed
Blo17g00905 Blo-Chr17:29807608 Blo04g00863 Blo-Chr4:9504801 3.15E-141 transposed
Blo16g00105 Blo-Chr16:2457143 Blo04g00863 Blo-Chr4:9504801 4.43E-56 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1189 Blo04g00863 . . . Bpe15g00497 Bpe13g00391 . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0892 . Cone6ag1697 Cone9ag1621 . . . . . . . . . . Bma03g00931 Bma06g00077 . . . Cma16g01278 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003844 1 1 1 2 2 0 2 0 0 2 1 0 2 2 0 2 0 0 2 0 2 0 0 0 0 1 0 0 0 1 24
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84250 PF07714 PK_Tyr_Ser-Thr 3.00E-49 CL0016 Blo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00863 Blo_Chr04 FPKM 2.674559 2.111126 2.321815 2.059008 3.038663 3.731876 3.960727 4.797248 4.218592 4.497697