Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00866 ATGTCATCAGAGGGAGGTGGTATTGATGCACCTCCCGAAGGGAAAATGGAAAACACTTCGAAAACTGGCTCGTACCATGAAAATAATGGAAAGATGGCCACGGACAATGAGTTAACTGATGGAAATCAATGTCCTGATGACCATGATCAGCTTGTACAAATAATTTTTGACTTAAGATCGCAGAATGAATTCTTGAAATCTCAGCTAGAAAGTGTACAAAAGTTGCCGAAACAAGGTGTTGCAAGTGAACATGAAGGTGAGGTATCTGCTGTTGTGAAATCACTGCACGAAAAAGTGGAATCCTTGCACAAAGAAATTATTGAAGAAAAACAAACTCGAGGTGCAGCCGAGGAAGCCTTAAAACATCTTCAAATGGCACACTCAGAAGCGGATGCAAGAGCGCTAGAGCTTTCTATAAAGCTTGCAGAAGCTAAACAGAAACTGGACCAAGAAATAAAAGAACGTGAAGAAAAATACTCAGAACTTGATTCAAAATTTAGCAGGCTTCACAAGCGTGCAAAACAGAGGATTCAAGATATTCAGAAGGAAAAAGATGACCTTGAGGTTCGGTTTCGAGAGGTTAGTGAAACATCAGAGCGTGCAGTATCCCAGCAGGCTACATTGCAACAAGAGCTAGAGCGAACCCGGCAGCAGGCTAATGATGCATTGAAAGCAATTGATGCAGAGAGACAACAATTACGAAGTGCCAATAACAAGCTCCGAGACAATATAGAGGAACTGCGAAATTCATTGCAACCTAAAGAAAATGCTCTTGAGAGGATGCAGCAGTCGCTTTTGGAGAAGGACCAGATGCTGGAAGATTTGCAAAATTCCCTTCAAGCAGCGGAGGAAAGAAGGCAAGCTTCATTGGCTGAACTCTCAGCTAAACATCAGAAGAGTTTGGAAAATTTGGAAGCTCAACTTGCTGATGCTTTATCTGACAGGAGTAAAGCTGGTGAAATTATTTCTGGACTCCAGGCATTAATTGCAGAGAAAGAAACAAAGATTGCAGAGATGGATGCAGCTTCAACTGGGGAGGCAGCCCGACTTAGAGCCGCAGTGGAAACTGTTAAGGGGGAGGCTGCGCTCCTGAGACATGAACACGAGAAGGAAAAAGAGAGCCTGGAGGCTTCCTTGCAGGGAATCAAAATGAAGTTGGAAATTGCTGAGAGTAACTACATACGTGCTGAAATTGAAGCAGCTAAGACAAGAAGTCAGCTGGAATCAGAAATTTCTGCCCAAAACAGGATCCTCAGTGCCAAAGATGCTGAACTCTCGGTGTTCAAAGAGGAGGTAAAATGCCTCGAAAAAGAATTTTCATCATACAAGGTTCGTGCTCATGCACTTCTGCAGAAGAAGGAGGCAGAGCTAGCTGCAGCTGTTGACTCTGAGCAAATTAAAATGCTTGAGGAAACATTAGAGGAGGCTGAAAAGGAATTATCGTTGGCATTGGCAGAGAAGGATCAGGTCCTATTAGATCTTAAGAATGCATTAGCAAATCACAATAAAGAACTAACAGACAGAGATTCAATTCTTAATGATGCCAAAAATAAAATCAAAATCTTAGAATCAAATCTACATTCTGCCAATGCTCGTCTTCAGTCAGAAAAAGAAGTTTGGGAAGTGAACCTTCAAAATGTGGAAGAAACATGGCGGATTAGATATGATACTCTAAAAGCTCAAAAGGAAGCATCAACTGGGCAAGACTGTCAAAAAGAATTGGAGGAGCTTAAACAACGATACTTGAGGATGAAGGAAGAGCATCATTCATTCCGTGATCTCGCGGATAGAATGATTGAGGAAAAGGATAGAGAAATCGCCAAACTTTTAGAAGATAATGAGAATCTTCATCAATCTCTGGAACCACGACTTGTGGATCAAAGTAGTAAGAATGCAGCTCTGCAAAAGCAGGATGTATCAAATTTTAGCACCTCTGCAGCTGAACAGCAAATTCTGATTTTAGCGAGGCAACAAGCTCAGAGAGAAGAAGAACTAGCTCAGTCACAGCGGCACATTTTAGCTCTTCAAGAAGAAATTGAGGAGCTTGAACGTGAGAATCGTCTTCATAGTCAACAGCAAGCCATGTTGAAGGAAGAGTTTCGTAACATGGAAAGAATGCAGAAGAGGGAAGGGGTGGACATGACATATCTTAAGAATGTTGTCTTGAAACTTCTTCAAACAGGCGAGGTGGAAGCTCTACTACCTGTGGTTGGGATGCTCCTTCAATTTAGTCCTGAAGAGATACAAAAGTGTCAACAAGCCTTTCGTGCCGCAACTGATGTTCCACCTAGCCCCTCAGGCGATTCTGCGGGACCTACTCGATCCCTTTTCTCAAGATTCTCATTTGCATGA 2352 42.35 MSSEGGGIDAPPEGKMENTSKTGSYHENNGKMATDNELTDGNQCPDDHDQLVQIIFDLRSQNEFLKSQLESVQKLPKQGVASEHEGEVSAVVKSLHEKVESLHKEIIEEKQTRGAAEEALKHLQMAHSEADARALELSIKLAEAKQKLDQEIKEREEKYSELDSKFSRLHKRAKQRIQDIQKEKDDLEVRFREVSETSERAVSQQATLQQELERTRQQANDALKAIDAERQQLRSANNKLRDNIEELRNSLQPKENALERMQQSLLEKDQMLEDLQNSLQAAEERRQASLAELSAKHQKSLENLEAQLADALSDRSKAGEIISGLQALIAEKETKIAEMDAASTGEAARLRAAVETVKGEAALLRHEHEKEKESLEASLQGIKMKLEIAESNYIRAEIEAAKTRSQLESEISAQNRILSAKDAELSVFKEEVKCLEKEFSSYKVRAHALLQKKEAELAAAVDSEQIKMLEETLEEAEKELSLALAEKDQVLLDLKNALANHNKELTDRDSILNDAKNKIKILESNLHSANARLQSEKEVWEVNLQNVEETWRIRYDTLKAQKEASTGQDCQKELEELKQRYLRMKEEHHSFRDLADRMIEEKDREIAKLLEDNENLHQSLEPRLVDQSSKNAALQKQDVSNFSTSAAEQQILILARQQAQREEELAQSQRHILALQEEIEELERENRLHSQQQAMLKEEFRNMERMQKREGVDMTYLKNVVLKLLQTGEVEALLPVVGMLLQFSPEEIQKCQQAFRAATDVPPSPSGDSAGPTRSLFSRFSFA 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9527249 9538590 - BLOR13778 Blo04g00866 59894

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00866 783 ProSiteProfiles GRIP domain profile. 707 754 IPR000237 -
Blo04g00866 783 Coils Coil 294 321 - -
Blo04g00866 783 MobiDBLite consensus disorder prediction 1 47 - -
Blo04g00866 783 Coils Coil 459 504 - -
Blo04g00866 783 Coils Coil 365 406 - -
Blo04g00866 783 Coils Coil 92 112 - -
Blo04g00866 783 PANTHER CROSSOVER SUPPRESSOR ON 3 OF GOWEN 57 753 - -
Blo04g00866 783 Coils Coil 418 438 - -
Blo04g00866 783 Coils Coil 658 699 - -
Blo04g00866 783 SMART 1grip 710 754 IPR000237 -
Blo04g00866 783 Pfam GRIP domain 711 750 IPR000237 -
Blo04g00866 783 Coils Coil 560 619 - -
Blo04g00866 783 MobiDBLite consensus disorder prediction 17 40 - -
Blo04g00866 783 Gene3D - 146 312 - -
Blo04g00866 783 Coils Coil 125 165 - -
Blo04g00866 783 Coils Coil 170 292 - -
Blo04g00866 783 PANTHER SYNAPTONEMAL COMPLEX PROTEIN-RELATED 57 753 - -
Blo04g00866 783 Coils Coil 512 550 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00866 - - - csv:101223202 1010.36
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1180 Blo04g00866 . . . Bpe15g00495 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0888 Cone12ag0858 . . . . . . . . . . . . . . . . . Cma16g01265 . . . . . . . . . . . . . . . . . . . Lsi07g01066 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007597 1 2 1 0 1 1 3 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00866 Blo_Chr04 FPKM 33.413406 33.042732 72.104294 74.893776 46.212147 46.025742 53.977085 45.157169 44.190407 61.529694