Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00872 ATGGATTTTATTGCATATTCGTCTCGATTTTCCTCCTCCTCCTCTTTTTCGTTCGCTAATGTCGTCGAGAGGGTCAAGGAAATCTGCTGCCACGCGGTTACTGCAATTATTGGGAATATTCTCTCGGCGATCTTCACGTTTTCCTTCGCGTTAGTGGGCACCTTGTTAGGAGCCATGACTGGGGCATTGATTGGGCAAGAGACAGAGAGTGGATTTGTGAGAGGCGCTGCCGTCGGGGCTATTTCAGGGGCTGTTTTCTCCATCGAAGTCTTTGAATCGTCTCTTATTCTTTGGCAGTCTGATGAATCTGGCATAGTCTGCCTTCTCTACCTGATTGATGTCATTTCAAGCCTCCTAAGCGGGAGACTTGTCCGAGAGCGAATTGGACCGGCCATATTTAGTGCAGTTCAAAGCCAGATGGGCGTAGCAGAGATGAGCTTCGAAGACTTGCCTAACATCTTTGACACTAGCAGCGCCAAAGGGCTGCCTGGAGACTCCGTTGAGAAGATCCCGAAGATCACAATTTCGATGAACAATGACTTGGACGCCTCTGGCGAGAAAGCTTCTTGTTCGGTCTGCCTTCAGGACTTCCAACTGGGAGAGACAGTCAGAAGTTTACCTCACTGCCATCACATGTTTCACTTACCTTGCATAGATAAATGGCTTCTCAAACATGGTTCTTGCCCTTTGTGCAGAAGGGATTTATGA 708 48.16 MDFIAYSSRFSSSSSFSFANVVERVKEICCHAVTAIIGNILSAIFTFSFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSIEVFESSLILWQSDESGIVCLLYLIDVISSLLSGRLVRERIGPAIFSAVQSQMGVAEMSFEDLPNIFDTSSAKGLPGDSVEKIPKITISMNNDLDASGEKASCSVCLQDFQLGETVRSLPHCHHMFHLPCIDKWLLKHGSCPLCRRDL 235
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 9690159 9691518 + BLOR13784 Blo04g00872 59900
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00872 235 SMART ring_2 190 231 IPR001841 -
Blo04g00872 235 CDD RING-H2_PA-TM-RING 190 232 - -
Blo04g00872 235 PANTHER RING/U-BOX SUPERFAMILY PROTEIN-RELATED 8 235 - -
Blo04g00872 235 SUPERFAMILY RING/U-box 189 235 - -
Blo04g00872 235 Pfam YMGG-like Gly-zipper 48 85 IPR027367 -
Blo04g00872 235 ProSiteProfiles Zinc finger RING-type profile. 190 232 IPR001841 -
Blo04g00872 235 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 8 235 IPR044523 -
Blo04g00872 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 235 IPR013083 -
Blo04g00872 235 Pfam Ring finger domain 189 232 IPR001841 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00872 Blo-Chr4:9690159 Blo05g00700 Blo-Chr5:23832693 1.13E-124 dispersed
Blo15g00321 Blo-Chr15:3721678 Blo04g00872 Blo-Chr4:9690159 5.49E-22 dispersed
Blo04g00872 Blo-Chr4:9690159 Blo03g01452 Blo-Chr3:41149327 1.70E-22 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00872 - - csv:101220376 399.823