Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Blo04g00872 | ATGGATTTTATTGCATATTCGTCTCGATTTTCCTCCTCCTCCTCTTTTTCGTTCGCTAATGTCGTCGAGAGGGTCAAGGAAATCTGCTGCCACGCGGTTACTGCAATTATTGGGAATATTCTCTCGGCGATCTTCACGTTTTCCTTCGCGTTAGTGGGCACCTTGTTAGGAGCCATGACTGGGGCATTGATTGGGCAAGAGACAGAGAGTGGATTTGTGAGAGGCGCTGCCGTCGGGGCTATTTCAGGGGCTGTTTTCTCCATCGAAGTCTTTGAATCGTCTCTTATTCTTTGGCAGTCTGATGAATCTGGCATAGTCTGCCTTCTCTACCTGATTGATGTCATTTCAAGCCTCCTAAGCGGGAGACTTGTCCGAGAGCGAATTGGACCGGCCATATTTAGTGCAGTTCAAAGCCAGATGGGCGTAGCAGAGATGAGCTTCGAAGACTTGCCTAACATCTTTGACACTAGCAGCGCCAAAGGGCTGCCTGGAGACTCCGTTGAGAAGATCCCGAAGATCACAATTTCGATGAACAATGACTTGGACGCCTCTGGCGAGAAAGCTTCTTGTTCGGTCTGCCTTCAGGACTTCCAACTGGGAGAGACAGTCAGAAGTTTACCTCACTGCCATCACATGTTTCACTTACCTTGCATAGATAAATGGCTTCTCAAACATGGTTCTTGCCCTTTGTGCAGAAGGGATTTATGA | 708 | 48.16 | MDFIAYSSRFSSSSSFSFANVVERVKEICCHAVTAIIGNILSAIFTFSFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSIEVFESSLILWQSDESGIVCLLYLIDVISSLLSGRLVRERIGPAIFSAVQSQMGVAEMSFEDLPNIFDTSSAKGLPGDSVEKIPKITISMNNDLDASGEKASCSVCLQDFQLGETVRSLPHCHHMFHLPCIDKWLLKHGSCPLCRRDL | 235 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 9690159 | 9691518 | + | BLOR13784 | Blo04g00872 | 59900 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Blo04g00872 | 235 | SMART | ring_2 | 190 | 231 | IPR001841 | - | |
| Blo04g00872 | 235 | CDD | RING-H2_PA-TM-RING | 190 | 232 | - | - | |
| Blo04g00872 | 235 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN-RELATED | 8 | 235 | - | - | |
| Blo04g00872 | 235 | SUPERFAMILY | RING/U-box | 189 | 235 | - | - | |
| Blo04g00872 | 235 | Pfam | YMGG-like Gly-zipper | 48 | 85 | IPR027367 | - | |
| Blo04g00872 | 235 | ProSiteProfiles | Zinc finger RING-type profile. | 190 | 232 | IPR001841 | - | |
| Blo04g00872 | 235 | PANTHER | NEP1-INTERACTING PROTEIN-LIKE 2 | 8 | 235 | IPR044523 | - | |
| Blo04g00872 | 235 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 152 | 235 | IPR013083 | - | |
| Blo04g00872 | 235 | Pfam | Ring finger domain | 189 | 232 | IPR001841 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Blo04g00872 | Blo-Chr4:9690159 | Blo05g00700 | Blo-Chr5:23832693 | 1.13E-124 | dispersed | |
| Blo15g00321 | Blo-Chr15:3721678 | Blo04g00872 | Blo-Chr4:9690159 | 5.49E-22 | dispersed | |
| Blo04g00872 | Blo-Chr4:9690159 | Blo03g01452 | Blo-Chr3:41149327 | 1.70E-22 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Blo04g00872 | - | - | csv:101220376 | 399.823 |