Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00873 ATGAACTTTTTGAGGGCCTGTTGGAGGCCATCCTCCTCCGACCCTTTTCTCCAAACTGGCTCAGATGCAACCGGCCGGCAAGATGGGTTACTTTGGTACAAGGACACTGGGCAGCACACCGGCGGTGAATTTTCAATGGCGGTGGTTCAGGCCAATAATTTGTTGGAGGATCAGAGCCAAATCGAGTCTGGCCCTTTGAGCTCACTCGACTCCGGCCCTTATGGCACCTTCGTTGGTGTCTACGATGGTCATGGAGGCCCCGAGACATCCCGTTTTGTTTGCGATCATTTATTCCACCATCTCAAAAGATTTGCATCAGAGCAACGGTCGATGTCAGTCGAGGTGATCAGGAAAGCATATCAAGCAACTGAGGAAGGGTTTTCATCAGTTGTTGCCAAACAATGGCCGATGAAGCCCCAAATAGCTGCAGTAGGATCTTGCTGCTTGGTTGGTGTGATTTGTGGAGGCACACTTTACATCGCCAACCTTGGAGATTCCCGGGCTGTTCTTGGGAGGCTTATGAGGTCTACAGGGGAGGTTCTTGCCATTCCCCTCTCTGCAGAACATAACGTCGGAATCGAATCCGTTAGGCAGGAGATGCACTCTTTGCACCCTGATGACTCCCATATTGTTGTTCTAAAGCACAATGTATGGCGAGTAAAGGGCTTGATACAGGTTCATACTCCATTGAAATTAGTGGGGAGCAATCTAGTTTCTGTTGGATTTCATGATTTTTGCTGCATAATCATTAGAGCTGTTGGTGCTGTGACACTTCAGAATGTTTTTCTTGGAATTGCTCGGAGGCTCGTGAAAACCGTATTGCAGGAAGCAGCGAAGAAAAGAGAGATGCGATATTCCGATCTCAAGAAAATCGACCGTGGTGTCCGCCGCCATTTTCATGACGATATTACAGTGATTGTCGTATTTCTTGACTCAAATCTTGTGAGCAGAGCCAGCTCGGTTAGAGGTCCCATCGTGTCGTTAAGAGGTGGAGGAATTAATGTGCCTGCAAAATCTCTTGCTCCTTGTGCCACTCCGAACCAGCTCAGATCAACTTGA 1059 48.35 MNFLRACWRPSSSDPFLQTGSDATGRQDGLLWYKDTGQHTGGEFSMAVVQANNLLEDQSQIESGPLSSLDSGPYGTFVGVYDGHGGPETSRFVCDHLFHHLKRFASEQRSMSVEVIRKAYQATEEGFSSVVAKQWPMKPQIAAVGSCCLVGVICGGTLYIANLGDSRAVLGRLMRSTGEVLAIPLSAEHNVGIESVRQEMHSLHPDDSHIVVLKHNVWRVKGLIQVHTPLKLVGSNLVSVGFHDFCCIIIRAVGAVTLQNVFLGIARRLVKTVLQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSNLVSRASSVRGPIVSLRGGGINVPAKSLAPCATPNQLRST 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9692817 9694666 - BLOR13785 Blo04g00873 59901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00873 352 Gene3D - 33 246 IPR036457 -
Blo04g00873 352 ProSiteProfiles PPM-type phosphatase domain profile. 43 310 IPR001932 -
Blo04g00873 352 Pfam Protein phosphatase 2C 73 190 IPR001932 -
Blo04g00873 352 ProSitePatterns PPM-type phosphatase domain signature. 77 85 IPR000222 GO:0043169
Blo04g00873 352 PANTHER PROTEIN PHOSPHATASE 2C 60-RELATED 2 227 - -
Blo04g00873 352 CDD PP2Cc 44 310 IPR001932 -
Blo04g00873 352 PANTHER ALPHABET, ISOFORM E-RELATED 260 340 - -
Blo04g00873 352 SMART PP2C_4 37 308 IPR001932 -
Blo04g00873 352 PANTHER ALPHABET, ISOFORM E-RELATED 2 227 - -
Blo04g00873 352 SUPERFAMILY PP2C-like 53 311 IPR036457 -
Blo04g00873 352 Gene3D - 251 312 IPR036457 -
Blo04g00873 352 PANTHER PROTEIN PHOSPHATASE 2C 60-RELATED 260 340 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00873 Blo-Chr4:9692817 Blo15g00384 Blo-Chr15:5408640 4.05E-147 dispersed
Blo04g00873 Blo-Chr4:9692817 Blo13g00497 Blo-Chr13:26208463 6.04E-150 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00873 K01102 - qsu:112022787 527.709