Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00876 ATGGCTTCCTCAGCGCATCCCTTCTCTCTTTCTCTTTCTTCCAAGCCCAGCTCCAAATCCTGTCTCACTAAACCCTCCTCTGCTAATTGTTTTTTAAGTGGTTCGAGCCGTAGCTTGGTCTATCTTCCTTCTTTGCGTTCTTCGCGATGCTCTATTGACTTGAATTCGAATGGATGTTCGGGATTGAACGTTAGGCCAAGTAGTCTTACGGTTCGCGCTAATTCCGCTCAGGTTATGGACCAGTCGCCGATTAAAACTGGTTCTCAGGCACCGACGATTGTGGAAGTGGATTTAGGTGACCGTAGCTATCCGATTTATATAGGATCTGGTCTTCTTGATCAACCTCACCTTCTCCAGAGACATGTCCACGGCAAGAGAGTTCTCGTGGTTACTAACAACACGGTTGGACCATTGTACCTGGATAAAGTTGTCGATGCTTTGACTAGAGGAAACCCAAATATATCAGTTGACTGTGTGATTTTACCAGATGGTGAGAAACACAAGGATATGGACACTCTTATGAAAGTCTTTGACAAAGCCATTGAGTCACGTCTAGACCGGAGATGTACTTTCGTTGCACTTGGAGGTGGTGTTATCGGTGACATGTGTGGGTTTGCTGCTGCTTCATTCCTCAGGGGTGTCAATTTCATTCAGATTCCTACAACTGTTATGGCGCAGGTGGACTCTTCTGTTGGGGGCAAAACAGGGATAAATCACAGTCTTGGGAAGAACTTAATTGGTGCATTCTACCAACCTCAGTGTGTACTTGTAGATACAGATACTTTAAATACCTTGCCTGATAGAGAACTAGCCTCGGGGTTTGCAGAGGTTATTAAGTATGGGCTTATAAGAGATGCAAAATTTTTTGAGTGGCAAGAGGAGAACATGCCAGCTTTAATAGCTAGGGATCCAAGTGCACTGGAATATGCAATAAAACGCTCATGTGAGAACAAAGCTGAGGTTGTGGCATTGGATGAGAAGGAAAGCGGGGTGAGGGCAACACTGAACTTGGGCCACACATTCGGCCATGGAATAGAAACTGGGATTGGCTATGGTCAGTGGCTTCATGGTGAAGCCGTTGCAGCTGGCATGGTGATGGCAGTCGACATGTCGTACCGTCTTGGATGGATAGATGATTCACTAGTGAAACGAGTGCACAAGATACTAAAACAGGCTAGGCTGCCCACTAGCCCTCCAGAAACCATGACCGTTGAGATGTTCAAATCAATTATGGCAGTTGATAAAAAGGTAGCCGATGGACTACTTAGGCTTATCCTTCTGAAAGGACCTTTAGGTAATTGCGTGTTCACCAGTGACTACGATAGAACGGATTACGTTCCAACTGTTTTTGACAACTTTAGTGCAAATGTGGTTGTCAATGGAAGTACTGTCAACTTGGGGTTGTGGGATACTGCTGGACAGGAAGATTATAATAGGTTAAGGCCGCTGAGTTATCGCGGGGCAGATGTTTTCATTTTGGCGTTTTCTCTTATTAGCAAGGCCAGCTACGAAAATGTTTCCAAGAAGTGGATTCCAGAGTTGAAACACTATGCCCCCGGTGTACCTATAGTTCTTGTTGGAACAAAACTTGATCTACGTGATGATAAGCAGTTCTTCGTAGACCATCCTGGTGCTGTTCCAATCTCTACAGCTCAGGGCGAGGAGCTAAGGAAGCTGATTGGCGCACCAGCTTACATAGAGTGCAGTTCAAAAACGCAGCAGAATGTGAAAGGAGTTTTTGACGCTGCAATTAGGGTTGTACTTCAACCACCAAAGCAGAAGAAAAAGAAGAGCAAAGCTCAGAAAGCCTGCTCCATATTGTGA 1824 45.29 MASSAHPFSLSLSSKPSSKSCLTKPSSANCFLSGSSRSLVYLPSLRSSRCSIDLNSNGCSGLNVRPSSLTVRANSAQVMDQSPIKTGSQAPTIVEVDLGDRSYPIYIGSGLLDQPHLLQRHVHGKRVLVVTNNTVGPLYLDKVVDALTRGNPNISVDCVILPDGEKHKDMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGFAAASFLRGVNFIQIPTTVMAQVDSSVGGKTGINHSLGKNLIGAFYQPQCVLVDTDTLNTLPDRELASGFAEVIKYGLIRDAKFFEWQEENMPALIARDPSALEYAIKRSCENKAEVVALDEKESGVRATLNLGHTFGHGIETGIGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSLVKRVHKILKQARLPTSPPETMTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTSDYDRTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFVDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKGVFDAAIRVVLQPPKQKKKKSKAQKACSIL 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9826122 9832112 + BLOR13788 Blo04g00876 59904

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00876 607 CDD Rop_like 436 588 - -
Blo04g00876 607 ProSiteProfiles small GTPase Ras family profile. 400 607 IPR001806 GO:0003924|GO:0005525
Blo04g00876 607 PANTHER 3-DEHYDROQUINATE SYNTHASE, CHLOROPLASTIC 90 451 - -
Blo04g00876 607 TIGRFAM small_GTP: small GTP-binding protein domain 442 581 IPR005225 GO:0005525
Blo04g00876 607 Hamap 3-dehydroquinate synthase [aroB]. 91 450 IPR016037 GO:0003856|GO:0005737|GO:0009073
Blo04g00876 607 MobiDBLite consensus disorder prediction 1 20 - -
Blo04g00876 607 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 436 588 IPR027417 -
Blo04g00876 607 CDD DHQS 102 444 - -
Blo04g00876 607 Gene3D - 78 264 - -
Blo04g00876 607 SUPERFAMILY Dehydroquinate synthase-like 95 443 - -
Blo04g00876 607 PANTHER 3-DEHYDROQUINATE SYNTHASE 90 451 - -
Blo04g00876 607 SMART rab_sub_5 422 590 - -
Blo04g00876 607 Gene3D - 265 451 - -
Blo04g00876 607 SMART rho_sub_3 434 590 IPR001806 GO:0003924|GO:0005525
Blo04g00876 607 ProSiteProfiles small GTPase Rab1 family profile. 401 607 - -
Blo04g00876 607 Pfam Ras family 435 588 IPR001806 GO:0003924|GO:0005525
Blo04g00876 607 SMART ras_sub_4 436 590 - -
Blo04g00876 607 Gene3D - 481 586 IPR027417 -
Blo04g00876 607 PRINTS Transforming protein P21 ras signature 519 532 - -
Blo04g00876 607 PRINTS Transforming protein P21 ras signature 440 456 - -
Blo04g00876 607 PRINTS Transforming protein P21 ras signature 565 587 - -
Blo04g00876 607 PRINTS Transforming protein P21 ras signature 457 479 - -
Blo04g00876 607 Pfam 3-dehydroquinate synthase 159 417 IPR030960 -
Blo04g00876 607 TIGRFAM aroB: 3-dehydroquinate synthase 103 440 IPR016037 GO:0003856|GO:0005737|GO:0009073
Blo04g00876 607 ProSiteProfiles small GTPase Rho family profile. 395 587 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00876 K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] - csv:101218240 682.559
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00876 Blo13g00048 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00876 Blo-Chr4:9826122 Blo15g00474 Blo-Chr15:7686524 2.14E-87 dispersed
Blo02g00242 Blo-Chr2:2318912 Blo04g00876 Blo-Chr4:9826122 9.65E-78 transposed
Blo13g00048 Blo-Chr13:702650 Blo04g00876 Blo-Chr4:9826122 2.33E-10 transposed
Blo01g01606 Blo-Chr1:55941341 Blo04g00876 Blo-Chr4:9826122 5.77E-83 wgd
Blo16g00089 Blo-Chr16:2258854 Blo04g00876 Blo-Chr4:9826122 6.85E-102 wgd
Blo18g00771 Blo-Chr18:21755109 Blo04g00876 Blo-Chr4:9826122 3.96E-91 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g705 Blo04g00876 . . . . . . . . . Cma10g00140 Cma11g00107 Car10g00131 Car11g00106 Sed08g0145 . Cpe04g01544 Bhi02g00417 Tan09g2221 Cmetu02g0238 . Hepe09g0185 . . Cla06g01646 Cam06g1831 Cec06g1880 Cco06g1886 Clacu06g1790 Cmu06g1732 Cre06g2550 Cone2ag0888 Cone16ag0122 Cone13ag0128 Cone19ag0132 . . . . Blo13g00048 . . . . Bpe15g00483 . Bma08g00175 . Cmo10g00146 Cmo11g00109 . . . . . Cpe18g00834 . . . . . . . . . . . . . . Lsi06g01534 Csa01g00169 Chy02g02562 Cme02g01951
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009618 1 0 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00876 Blo_Chr04 FPKM 0.287726 0.498576 2.420945 2.043811 12.225376 10.152002 10.062555 0.0 0.0 0.0