Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00878 ATGGCTGAAAACTTGGGCGAGAGTCGTCTTGAAAATTTTGAATGCTCCTCCACTCCAAGCAATCCAATGGGTACTTCTTCAAGGAGGGTGTTTGACAGAATAGCATGTATGGCCAGTACTTTGAGGAGGAGCAGATCTGCTCGAGGAATAAGACTTTTTCATAGAGATGTTGAGCAGCAAGAGCTACAGCAAGCAGACACTCGTTGCCTCTCATCCTGCTACAGTGTCTTTGTAGCTCGCCTTGCCATAATGGTCATGTTGGCAATTTTAATTGGACTTTTAACAATATTGACGTGGCATTTTACGAAGATCTACACAGCTGAGTCCCTGGACAGCTTAGCATATGGTCTGCGACATGAGCTTCTACAACGTCCAATTCTAAAAATGTCAAGCATCTTTAACTCCACTTCCGAAATAACAACTGCCCAGGTTAAGCTCTCGGAGTATGTCGTAAGAAAGTACAATAAGCCTGCAACTCAAGCACAAGAAGTTGAGTTGTATGCATCAATGAAGGATGTAACTTGGGCTCTATTTGCAAGTGAAAAAGCTCTGGACGCCATCACTATCAACTACAGGAACGGCTTTGTACAGGCATTTCATAGAGATCATAGTAGCAATAACACATTCTATATTTACTCTGATCTCACCAACTATTCTATCAGTTCTCCTGAGTCTTATAACCTCAATAGACTGCCATCAGATCAAGGCTGGTCTGACCATCCAATTCACGGCAACCTTTCTGCGATTTGGTATCGTGAACCACTCGATCCTGTCAGTGGTGTAAAGATTGGAAAATCAAGGCCAATCCCTCCTGAGGATTTGATTAATATTGCTGGAATTTCGCAAGTGCCATATGGTGTGGCCTCGTGGGATGTGACTGTCAGCAAGTATATGGACTCTCCATTACTTTCTGCTGCATTGCCCGTCTCGGACCCTTCAAATGAAAGTATTATTGCTGTTGTGGGTGTCACCACTGCACTTTCTAGCGTAGGCCAGCTGATGAAAGAGCTTGTTGAATTTCATAGTGGGCATATTTATCTGACCTCTCAAGAGGGTTACTTGCTAGCTACTTCCACCAATGCTCCGCTTTTGACACAAACTATCAAGGGTCCAAAGCTTACGATGGCTGTAGATTCCGAGGATGACTCGATACGATTAGGCGCTGAGTGGCTGCAGAAAACTTACGGCAACAAGTTTCCTCCTAATCATGAGGTTCATGCGGAGAATGTCAAGCTTGGTCGCCAGCGATATTACATCGACTCATTTTTCCTCAATTTAAAGAGACTTCCTATTGTTGGGGTTGTCATCATTCCAAGAAAATACATAATGGGGAAGGTGGATGAGAGAGCTTTCAAAACACTGGTTATCCTAATATCTGCATCATTATGTATCTTAGTCATTGGATGTGTCTGCATTTTCATTTTGACTAACGGAGTATCGAAGGAAATGAAACTAAGAGCAGAATTGATAAGCCACCTGGATGCAAGAAGAAGGGCTGAGGCATCTAACAACTACAAAAGCCAATTTCTAGCAAACATGAGTCATGAGTTACGGACACCGATGGCTGCAGTGATTGGACTGTTGGACATTCTTATGTGTGATGATTGCATAACAAATGAGCAGTATGCTACAGTTTCCCAGATTCGGAAATGCTCAACAGCTCTACTCCGGCTACTGAACAACATATTGGACTTGAGCAAGGTTGAATCTGGAAAATTAGTGCTGGAAGAAGCTGAGTTTGACCTGGGACGGGAACTTGAAGGTCTTGTCGATATGTTTTCAGTGCAATGCATTAATCACAACGTGGAGACTGTGTTAGATCTTTCTGATGATATGCCGAGATTAGTTCGGGGAGACTCTGGTAGAGTTGTTCAAATATTTACAAATTTGATCAGCAATTCTATCAAGTTTACGGCATCTGGTCACATTATTCTTCGGGGGTGGTGTGAGAGCTCAAGTTCTTTAAATGATGCTGGGAAGTTTTCTCTCGATCAGAAGAGATCTCGCAAATGGGATTCTGTCTTTGAAAGCTTCGAGCAAGCTGACCCCTCAACGACCCGAACGCATGGAGGCACGGGACTCGGACTATGCATTGTACGAACTTTGGTGAAGAAGATGGGGGGAGAAATCAAGGTTGTGAAGAAGGATGGTCAAGGAACATTAATGCAATTCTACTTGGTGCTAAGCACACCAAGGGATGCCTTGGAGCAACGCTGTCAAATAGATTTTTCAGGGCATAATATGGTGTTATTGCTTGCCTTACGAGGGAGCATGAGTAGATTGATCATGTCTGAGTGGCTTCCTAAAATCGGAGTGCGAACTGTTCAAGCGTCCGAGTGGAACGATTTGACAGTGATTCTTCAAGAACTAATCCGAGGGAGAAATCATGGATCTCTGACTGGATCTTTCAGAACTGAATCATTCGATATACAAGACGTGAGAGGTCACATCTTCATCACTTTTGTCGATATTTGGCTGCTTGACTTGAGCACGGACATATGGAAGGAGCAACTTAATTTCCTCGATAAATACTCGGGAAAGACTAAGTTTGCGTGGATGTTAAATCACGATACCTCCAATGCCGTAAAGATGGAGCTTCGGAGGAAAGGGCACTTGTTAATGATCAACAAACCTTTGTACAAGGCAAAAATGATTCAGATTCTGGAAGCTGTGATGAAGGCAAAGAATGATGAACACCCAAAAAGAAGTTTGAATTCTCAATCTTTATCGAAGGAAGGCGACTTCTATGAATGCCTCGAAATCGATTCCACCCATTTTGATAGCTGTAGCTCGGATGATTCTGATATAGCCAAATCAGGTAATTCAAACTCTGAATGTTCATTTCAAGTTGGAGAAAAACAGAGAGATGGTATTACAAAGCCATGCAGGTCAACTTACCAGAAAGGCAACAGGTTTCTAGTAGAACCAACTAGTGTGTATTCAAAGCAAAGTACGCCCATTTCATCAGCAAATTCTGAATGTCAAGAACAGAATTTGGGGAAAGAAGAGGGCGAATCGAATTCTAGATGTGAGCACCGTCAAAAATCTCTCGAAGGAGTACGAATTCTCCTTGCAGAAGATACACCAGTTCTCCAAAGAGTGACAACTAAAATGCTCGAAAAAATGGGAGCTGAAGTTGTTGCGGTGGGAGATGGAGTGCAGGCGGTAGACGCTATATCATCGATGCTAGAAGTCGAAGAAAACAGCAGGGAATCTAAGACCAAAGTCGGGGACACCACCCCATATGACTTGATCTTAATGGACTGTCAAATGCCGAAGATGGATGGATACGAAGCGACGAGAGCAATCAGGAAATCAGAAGCCGGAAGCAGGTTTCACATTCCGATCGTCGCTTTGACGGCTCATGCCATGTCGTCGGACGAAGCAAAATGCTTGGAAGTAGGGATGGATGCTTATTTGACAAAGCCAATTAACTATAATTTGATGGTCTCCACCATTCTTTCTCTCACTAAAAGAATACCTTCACTTCCCTCCGCCCAAGGATGA 3507 43.28 MAENLGESRLENFECSSTPSNPMGTSSRRVFDRIACMASTLRRSRSARGIRLFHRDVEQQELQQADTRCLSSCYSVFVARLAIMVMLAILIGLLTILTWHFTKIYTAESLDSLAYGLRHELLQRPILKMSSIFNSTSEITTAQVKLSEYVVRKYNKPATQAQEVELYASMKDVTWALFASEKALDAITINYRNGFVQAFHRDHSSNNTFYIYSDLTNYSISSPESYNLNRLPSDQGWSDHPIHGNLSAIWYREPLDPVSGVKIGKSRPIPPEDLINIAGISQVPYGVASWDVTVSKYMDSPLLSAALPVSDPSNESIIAVVGVTTALSSVGQLMKELVEFHSGHIYLTSQEGYLLATSTNAPLLTQTIKGPKLTMAVDSEDDSIRLGAEWLQKTYGNKFPPNHEVHAENVKLGRQRYYIDSFFLNLKRLPIVGVVIIPRKYIMGKVDERAFKTLVILISASLCILVIGCVCIFILTNGVSKEMKLRAELISHLDARRRAEASNNYKSQFLANMSHELRTPMAAVIGLLDILMCDDCITNEQYATVSQIRKCSTALLRLLNNILDLSKVESGKLVLEEAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPRLVRGDSGRVVQIFTNLISNSIKFTASGHIILRGWCESSSSLNDAGKFSLDQKRSRKWDSVFESFEQADPSTTRTHGGTGLGLCIVRTLVKKMGGEIKVVKKDGQGTLMQFYLVLSTPRDALEQRCQIDFSGHNMVLLLALRGSMSRLIMSEWLPKIGVRTVQASEWNDLTVILQELIRGRNHGSLTGSFRTESFDIQDVRGHIFITFVDIWLLDLSTDIWKEQLNFLDKYSGKTKFAWMLNHDTSNAVKMELRRKGHLLMINKPLYKAKMIQILEAVMKAKNDEHPKRSLNSQSLSKEGDFYECLEIDSTHFDSCSSDDSDIAKSGNSNSECSFQVGEKQRDGITKPCRSTYQKGNRFLVEPTSVYSKQSTPISSANSECQEQNLGKEEGESNSRCEHRQKSLEGVRILLAEDTPVLQRVTTKMLEKMGAEVVAVGDGVQAVDAISSMLEVEENSRESKTKVGDTTPYDLILMDCQMPKMDGYEATRAIRKSEAGSRFHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPINYNLMVSTILSLTKRIPSLPSAQG 1168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9852386 9857526 - BLOR13790 Blo04g00878 59906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00878 1168 PANTHER TWO-COMPONENT HISTIDINE KINASE 23 667 - -
Blo04g00878 1168 PANTHER TWO-COMPONENT HISTIDINE KINASE 669 1158 - -
Blo04g00878 1168 SMART REC_2 1020 1153 IPR001789 GO:0000160
Blo04g00878 1168 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 560 726 IPR036890 -
Blo04g00878 1168 Pfam Response regulator receiver domain 1022 1152 IPR001789 GO:0000160
Blo04g00878 1168 Gene3D - 999 1158 - -
Blo04g00878 1168 SMART HKATPase_4 618 730 IPR003594 -
Blo04g00878 1168 CDD HisKA 506 567 IPR003661 GO:0000155|GO:0007165
Blo04g00878 1168 MobiDBLite consensus disorder prediction 984 1010 - -
Blo04g00878 1168 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 493 572 IPR036097 GO:0000155|GO:0007165
Blo04g00878 1168 MobiDBLite consensus disorder prediction 10 24 - -
Blo04g00878 1168 CDD REC_hyHK_CKI1_RcsC-like 1022 1153 - -
Blo04g00878 1168 PANTHER OSMOSENSOR HISTIDINE KINASE 23 667 - -
Blo04g00878 1168 PANTHER OSMOSENSOR HISTIDINE KINASE 669 1158 - -
Blo04g00878 1168 SMART HisKA_10 505 571 IPR003661 GO:0000155|GO:0007165
Blo04g00878 1168 Pfam His Kinase A (phospho-acceptor) domain 506 571 IPR003661 GO:0000155|GO:0007165
Blo04g00878 1168 Gene3D - 573 732 IPR036890 -
Blo04g00878 1168 SUPERFAMILY CheY-like 1018 1161 IPR011006 -
Blo04g00878 1168 PRINTS Bacterial sensor protein C-terminal signature 673 683 IPR004358 GO:0016310|GO:0016772
Blo04g00878 1168 PRINTS Bacterial sensor protein C-terminal signature 714 727 IPR004358 GO:0016310|GO:0016772
Blo04g00878 1168 PRINTS Bacterial sensor protein C-terminal signature 690 708 IPR004358 GO:0016310|GO:0016772
Blo04g00878 1168 ProSiteProfiles Histidine kinase domain profile. 512 730 IPR005467 -
Blo04g00878 1168 ProSiteProfiles Response regulatory domain profile. 1021 1157 IPR001789 GO:0000160
Blo04g00878 1168 MobiDBLite consensus disorder prediction 1 24 - -
Blo04g00878 1168 Gene3D - 493 572 - -
Blo04g00878 1168 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 618 729 IPR003594 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo04g00878 Blo16g00087 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00878 Blo-Chr4:9852386 Blo05g00256 Blo-Chr5:2842719 4.43E-57 dispersed
Blo11g00531 Blo-Chr11:4911356 Blo04g00878 Blo-Chr4:9852386 1.68E-24 transposed
Blo16g00087 Blo-Chr16:2245073 Blo04g00878 Blo-Chr4:9852386 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12311 PF00072 Response_reg 5.40E-22 CL0304 Blo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00878 - - cmo:103490686 1660.58