Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00878 ATGGCTGAAAACTTGGGCGAGAGTCGTCTTGAAAATTTTGAATGCTCCTCCACTCCAAGCAATCCAATGGGTACTTCTTCAAGGAGGGTGTTTGACAGAATAGCATGTATGGCCAGTACTTTGAGGAGGAGCAGATCTGCTCGAGGAATAAGACTTTTTCATAGAGATGTTGAGCAGCAAGAGCTACAGCAAGCAGACACTCGTTGCCTCTCATCCTGCTACAGTGTCTTTGTAGCTCGCCTTGCCATAATGGTCATGTTGGCAATTTTAATTGGACTTTTAACAATATTGACGTGGCATTTTACGAAGATCTACACAGCTGAGTCCCTGGACAGCTTAGCATATGGTCTGCGACATGAGCTTCTACAACGTCCAATTCTAAAAATGTCAAGCATCTTTAACTCCACTTCCGAAATAACAACTGCCCAGGTTAAGCTCTCGGAGTATGTCGTAAGAAAGTACAATAAGCCTGCAACTCAAGCACAAGAAGTTGAGTTGTATGCATCAATGAAGGATGTAACTTGGGCTCTATTTGCAAGTGAAAAAGCTCTGGACGCCATCACTATCAACTACAGGAACGGCTTTGTACAGGCATTTCATAGAGATCATAGTAGCAATAACACATTCTATATTTACTCTGATCTCACCAACTATTCTATCAGTTCTCCTGAGTCTTATAACCTCAATAGACTGCCATCAGATCAAGGCTGGTCTGACCATCCAATTCACGGCAACCTTTCTGCGATTTGGTATCGTGAACCACTCGATCCTGTCAGTGGTGTAAAGATTGGAAAATCAAGGCCAATCCCTCCTGAGGATTTGATTAATATTGCTGGAATTTCGCAAGTGCCATATGGTGTGGCCTCGTGGGATGTGACTGTCAGCAAGTATATGGACTCTCCATTACTTTCTGCTGCATTGCCCGTCTCGGACCCTTCAAATGAAAGTATTATTGCTGTTGTGGGTGTCACCACTGCACTTTCTAGCGTAGGCCAGCTGATGAAAGAGCTTGTTGAATTTCATAGTGGGCATATTTATCTGACCTCTCAAGAGGGTTACTTGCTAGCTACTTCCACCAATGCTCCGCTTTTGACACAAACTATCAAGGGTCCAAAGCTTACGATGGCTGTAGATTCCGAGGATGACTCGATACGATTAGGCGCTGAGTGGCTGCAGAAAACTTACGGCAACAAGTTTCCTCCTAATCATGAGGTTCATGCGGAGAATGTCAAGCTTGGTCGCCAGCGATATTACATCGACTCATTTTTCCTCAATTTAAAGAGACTTCCTATTGTTGGGGTTGTCATCATTCCAAGAAAATACATAATGGGGAAGGTGGATGAGAGAGCTTTCAAAACACTGGTTATCCTAATATCTGCATCATTATGTATCTTAGTCATTGGATGTGTCTGCATTTTCATTTTGACTAACGGAGTATCGAAGGAAATGAAACTAAGAGCAGAATTGATAAGCCACCTGGATGCAAGAAGAAGGGCTGAGGCATCTAACAACTACAAAAGCCAATTTCTAGCAAACATGAGTCATGAGTTACGGACACCGATGGCTGCAGTGATTGGACTGTTGGACATTCTTATGTGTGATGATTGCATAACAAATGAGCAGTATGCTACAGTTTCCCAGATTCGGAAATGCTCAACAGCTCTACTCCGGCTACTGAACAACATATTGGACTTGAGCAAGGTTGAATCTGGAAAATTAGTGCTGGAAGAAGCTGAGTTTGACCTGGGACGGGAACTTGAAGGTCTTGTCGATATGTTTTCAGTGCAATGCATTAATCACAACGTGGAGACTGTGTTAGATCTTTCTGATGATATGCCGAGATTAGTTCGGGGAGACTCTGGTAGAGTTGTTCAAATATTTACAAATTTGATCAGCAATTCTATCAAGTTTACGGCATCTGGTCACATTATTCTTCGGGGGTGGTGTGAGAGCTCAAGTTCTTTAAATGATGCTGGGAAGTTTTCTCTCGATCAGAAGAGATCTCGCAAATGGGATTCTGTCTTTGAAAGCTTCGAGCAAGCTGACCCCTCAACGACCCGAACGCATGGAGGCACGGGACTCGGACTATGCATTGTACGAACTTTGGTGAAGAAGATGGGGGGAGAAATCAAGGTTGTGAAGAAGGATGGTCAAGGAACATTAATGCAATTCTACTTGGTGCTAAGCACACCAAGGGATGCCTTGGAGCAACGCTGTCAAATAGATTTTTCAGGGCATAATATGGTGTTATTGCTTGCCTTACGAGGGAGCATGAGTAGATTGATCATGTCTGAGTGGCTTCCTAAAATCGGAGTGCGAACTGTTCAAGCGTCCGAGTGGAACGATTTGACAGTGATTCTTCAAGAACTAATCCGAGGGAGAAATCATGGATCTCTGACTGGATCTTTCAGAACTGAATCATTCGATATACAAGACGTGAGAGGTCACATCTTCATCACTTTTGTCGATATTTGGCTGCTTGACTTGAGCACGGACATATGGAAGGAGCAACTTAATTTCCTCGATAAATACTCGGGAAAGACTAAGTTTGCGTGGATGTTAAATCACGATACCTCCAATGCCGTAAAGATGGAGCTTCGGAGGAAAGGGCACTTGTTAATGATCAACAAACCTTTGTACAAGGCAAAAATGATTCAGATTCTGGAAGCTGTGATGAAGGCAAAGAATGATGAACACCCAAAAAGAAGTTTGAATTCTCAATCTTTATCGAAGGAAGGCGACTTCTATGAATGCCTCGAAATCGATTCCACCCATTTTGATAGCTGTAGCTCGGATGATTCTGATATAGCCAAATCAGGTAATTCAAACTCTGAATGTTCATTTCAAGTTGGAGAAAAACAGAGAGATGGTATTACAAAGCCATGCAGGTCAACTTACCAGAAAGGCAACAGGTTTCTAGTAGAACCAACTAGTGTGTATTCAAAGCAAAGTACGCCCATTTCATCAGCAAATTCTGAATGTCAAGAACAGAATTTGGGGAAAGAAGAGGGCGAATCGAATTCTAGATGTGAGCACCGTCAAAAATCTCTCGAAGGAGTACGAATTCTCCTTGCAGAAGATACACCAGTTCTCCAAAGAGTGACAACTAAAATGCTCGAAAAAATGGGAGCTGAAGTTGTTGCGGTGGGAGATGGAGTGCAGGCGGTAGACGCTATATCATCGATGCTAGAAGTCGAAGAAAACAGCAGGGAATCTAAGACCAAAGTCGGGGACACCACCCCATATGACTTGATCTTAATGGACTGTCAAATGCCGAAGATGGATGGATACGAAGCGACGAGAGCAATCAGGAAATCAGAAGCCGGAAGCAGGTTTCACATTCCGATCGTCGCTTTGACGGCTCATGCCATGTCGTCGGACGAAGCAAAATGCTTGGAAGTAGGGATGGATGCTTATTTGACAAAGCCAATTAACTATAATTTGATGGTCTCCACCATTCTTTCTCTCACTAAAAGAATACCTTCACTTCCCTCCGCCCAAGGATGA 3507 43.28 MAENLGESRLENFECSSTPSNPMGTSSRRVFDRIACMASTLRRSRSARGIRLFHRDVEQQELQQADTRCLSSCYSVFVARLAIMVMLAILIGLLTILTWHFTKIYTAESLDSLAYGLRHELLQRPILKMSSIFNSTSEITTAQVKLSEYVVRKYNKPATQAQEVELYASMKDVTWALFASEKALDAITINYRNGFVQAFHRDHSSNNTFYIYSDLTNYSISSPESYNLNRLPSDQGWSDHPIHGNLSAIWYREPLDPVSGVKIGKSRPIPPEDLINIAGISQVPYGVASWDVTVSKYMDSPLLSAALPVSDPSNESIIAVVGVTTALSSVGQLMKELVEFHSGHIYLTSQEGYLLATSTNAPLLTQTIKGPKLTMAVDSEDDSIRLGAEWLQKTYGNKFPPNHEVHAENVKLGRQRYYIDSFFLNLKRLPIVGVVIIPRKYIMGKVDERAFKTLVILISASLCILVIGCVCIFILTNGVSKEMKLRAELISHLDARRRAEASNNYKSQFLANMSHELRTPMAAVIGLLDILMCDDCITNEQYATVSQIRKCSTALLRLLNNILDLSKVESGKLVLEEAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPRLVRGDSGRVVQIFTNLISNSIKFTASGHIILRGWCESSSSLNDAGKFSLDQKRSRKWDSVFESFEQADPSTTRTHGGTGLGLCIVRTLVKKMGGEIKVVKKDGQGTLMQFYLVLSTPRDALEQRCQIDFSGHNMVLLLALRGSMSRLIMSEWLPKIGVRTVQASEWNDLTVILQELIRGRNHGSLTGSFRTESFDIQDVRGHIFITFVDIWLLDLSTDIWKEQLNFLDKYSGKTKFAWMLNHDTSNAVKMELRRKGHLLMINKPLYKAKMIQILEAVMKAKNDEHPKRSLNSQSLSKEGDFYECLEIDSTHFDSCSSDDSDIAKSGNSNSECSFQVGEKQRDGITKPCRSTYQKGNRFLVEPTSVYSKQSTPISSANSECQEQNLGKEEGESNSRCEHRQKSLEGVRILLAEDTPVLQRVTTKMLEKMGAEVVAVGDGVQAVDAISSMLEVEENSRESKTKVGDTTPYDLILMDCQMPKMDGYEATRAIRKSEAGSRFHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPINYNLMVSTILSLTKRIPSLPSAQG 1168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9852386 9857526 - BLOR13790 Blo04g00878 59906

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00878 1168 PANTHER TWO-COMPONENT HISTIDINE KINASE 23 667 - -
Blo04g00878 1168 PANTHER TWO-COMPONENT HISTIDINE KINASE 669 1158 - -
Blo04g00878 1168 SMART REC_2 1020 1153 IPR001789 GO:0000160
Blo04g00878 1168 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 560 726 IPR036890 -
Blo04g00878 1168 Pfam Response regulator receiver domain 1022 1152 IPR001789 GO:0000160
Blo04g00878 1168 Gene3D - 999 1158 - -
Blo04g00878 1168 SMART HKATPase_4 618 730 IPR003594 -
Blo04g00878 1168 CDD HisKA 506 567 IPR003661 GO:0000155|GO:0007165
Blo04g00878 1168 MobiDBLite consensus disorder prediction 984 1010 - -
Blo04g00878 1168 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 493 572 IPR036097 GO:0000155|GO:0007165
Blo04g00878 1168 MobiDBLite consensus disorder prediction 10 24 - -
Blo04g00878 1168 CDD REC_hyHK_CKI1_RcsC-like 1022 1153 - -
Blo04g00878 1168 PANTHER OSMOSENSOR HISTIDINE KINASE 23 667 - -
Blo04g00878 1168 PANTHER OSMOSENSOR HISTIDINE KINASE 669 1158 - -
Blo04g00878 1168 SMART HisKA_10 505 571 IPR003661 GO:0000155|GO:0007165
Blo04g00878 1168 Pfam His Kinase A (phospho-acceptor) domain 506 571 IPR003661 GO:0000155|GO:0007165
Blo04g00878 1168 Gene3D - 573 732 IPR036890 -
Blo04g00878 1168 SUPERFAMILY CheY-like 1018 1161 IPR011006 -
Blo04g00878 1168 PRINTS Bacterial sensor protein C-terminal signature 673 683 IPR004358 GO:0016310|GO:0016772
Blo04g00878 1168 PRINTS Bacterial sensor protein C-terminal signature 714 727 IPR004358 GO:0016310|GO:0016772
Blo04g00878 1168 PRINTS Bacterial sensor protein C-terminal signature 690 708 IPR004358 GO:0016310|GO:0016772
Blo04g00878 1168 ProSiteProfiles Histidine kinase domain profile. 512 730 IPR005467 -
Blo04g00878 1168 ProSiteProfiles Response regulatory domain profile. 1021 1157 IPR001789 GO:0000160
Blo04g00878 1168 MobiDBLite consensus disorder prediction 1 24 - -
Blo04g00878 1168 Gene3D - 493 572 - -
Blo04g00878 1168 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 618 729 IPR003594 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00878 - - - cmo:103490686 1660.58
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00878 Blo16g00087 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00878 Blo-Chr4:9852386 Blo05g00256 Blo-Chr5:2842719 4.43E-57 dispersed
Blo11g00531 Blo-Chr11:4911356 Blo04g00878 Blo-Chr4:9852386 1.68E-24 transposed
Blo16g00087 Blo-Chr16:2245073 Blo04g00878 Blo-Chr4:9852386 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1138 Blo04g00878 Blo16g00087 . . Bpe15g00478 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0858 Cone12ag0821 . . . . . . . . . . . . Bma03g00954 . . . . Cma16g01243 . . . . . . . . . . . . . . . . . . . Lsi07g01094 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo04g00878 BCT 9 1158 Histidine Kinase Gene Family AT2G17820 63.3 0.0e+00 1365.5
Blo16g00087 BCT 35 1178 Histidine Kinase Gene Family AT2G17820 63.7 0.0e+00 1358.2
Blo11g00965 . 17 1036 Histidine Kinase Gene Family AT2G01830 69.6 0.0e+00 1333.2
Blo01g00163 . 159 1111 Histidine Kinase Gene Family AT2G01830 52.4 7.3e-271 930.6
Blo12g00277 . 8 927 Histidine Kinase Gene Family AT2G01830 53.8 3.7e-267 918.3
Blo02g00136 . 308 1182 Histidine Kinase Gene Family AT2G01830 50.4 1.5e-236 816.6
Blo01g01429 . 1 940 Histidine Kinase Gene Family AT5G10720 59.1 1.0e-292 1003.0
Blo18g00692 . 112 1231 Histidine Kinase Gene Family AT1G09570 75.9 0.0e+00 1735.7
Blo07g00144 CCT 699 1790 Histidine Kinase Gene Family AT1G09570 53.7 0.0e+00 1175.6
Blo01g00030 CCT 36 1148 Histidine Kinase Gene Family AT1G09570 52.6 0.0e+00 1164.8
Blo02g00140 BCT 494 1519 Histidine Kinase Gene Family AT1G09570 53.7 0.0e+00 1130.5
Blo01g00879 . 36 1109 Histidine Kinase Gene Family AT1G09570 50.3 2.9e-310 1061.6
Blo15g00443 . 12 682 Histidine Kinase Gene Family AT1G09570 61.9 3.7e-249 858.6
Blo01g00030 CCT 12 1084 Histidine Kinase Gene Family AT2G18790 75.4 0.0e+00 1607.0
Blo07g00144 CCT 700 1741 Histidine Kinase Gene Family AT2G18790 75.7 0.0e+00 1601.3
Blo01g00879 . 15 1047 Histidine Kinase Gene Family AT2G18790 62.1 0.0e+00 1286.6
Blo02g00140 BCT 494 1510 Histidine Kinase Gene Family AT2G18790 53.2 0.0e+00 1083.2
Blo18g00692 . 132 1166 Histidine Kinase Gene Family AT2G18790 50.8 9.7e-306 1046.6
Blo15g00443 . 23 683 Histidine Kinase Gene Family AT2G18790 61.5 6.9e-235 811.2
Blo02g00140 BCT 499 1520 Histidine Kinase Gene Family AT5G35840 62.6 0.0e+00 1308.1
Blo07g00144 CCT 691 1792 Histidine Kinase Gene Family AT5G35840 51.7 0.0e+00 1133.2
Blo18g00692 . 120 1226 Histidine Kinase Gene Family AT5G35840 50.2 0.0e+00 1105.5
Blo01g00030 CCT 39 1144 Histidine Kinase Gene Family AT5G35840 50.9 0.0e+00 1102.4
Blo15g00443 . 10 682 Histidine Kinase Gene Family AT5G35840 68.7 1.1e-274 943.3
Blo15g00444 BCT 1 367 Histidine Kinase Gene Family AT5G35840 52.7 3.2e-107 387.1
Blo07g00144 CCT 673 1792 Histidine Kinase Gene Family AT4G16250 72.9 0.0e+00 1638.2
Blo01g00030 CCT 8 1144 Histidine Kinase Gene Family AT4G16250 72.0 0.0e+00 1637.5
Blo01g00879 . 35 1109 Histidine Kinase Gene Family AT4G16250 60.1 0.0e+00 1307.7
Blo02g00140 BCT 482 1520 Histidine Kinase Gene Family AT4G16250 52.4 1.1e-312 1069.7
Blo15g00443 . 24 683 Histidine Kinase Gene Family AT4G16250 59.4 2.4e-227 786.2
Blo01g00879 . 14 1110 Histidine Kinase Gene Family AT4G18130 64.4 0.0e+00 1400.6
Blo07g00144 CCT 708 1786 Histidine Kinase Gene Family AT4G18130 58.5 0.0e+00 1249.2
Blo01g00030 CCT 39 1145 Histidine Kinase Gene Family AT4G18130 57.1 0.0e+00 1237.6
Blo15g00443 . 28 683 Histidine Kinase Gene Family AT4G18130 55.3 7.8e-207 718.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005785 2 0 2 1 2 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12311 PF00072 Response_reg 5.40E-22 CL0304 Blo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00878 Blo_Chr04 FPKM 42.372658 43.632725 48.914459 48.116333 52.477852 55.100018 55.802036 55.40213 59.166653 53.934856