Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00884 ATGAACCGCTGGAAAGCTGAGAATTTCTCGCAGTCTTTTGCAGCAGATGAGGTTTCCCCATCGACTCGTCTTCAGCCTCAGTCTCTTCCAATGTCCACCAATGGGTCTCACGCCTCTCTTTCAGAATTTAGGTCAGTTCAATTGATCTTCGATTCCCGTGCTTTGTATTTTCTTCCTATTGAATCATTACAAAGACCTGATGTGGAAAGAAAAGATCCAATCGTAACTGCAAGGAAGGTTCAGAAGGCAGATCGAGAAAAATTGCGAAGGGATCGATTGAACGAACTATTTCTCGAGTTGGAAAACAAACTAGATCCAGATAAGCCTAAGAATGATAAAGCAACCATTCTTACAGAAACAATCCAAATTCTGAACGATTTAACCGCCGAAGTAAACAGGCTGAAGGCTGAATTTGGTACTCTTTCTGAGGAATCGCAAGAGCTTACCCAAGAGAAGAGTGAACTCAAGGAAGAGAAGGCTTCCTTAAAATCTGACATAGAAAATTTAAATACTCAGTACCAACAAAGATTAACAGTTATGTTTCCATGGACTCATGTTGAATCGTATCCTTCTGTCGTGATGACCGGTCGGCCTTATTCATATACGGTTCCGGTGGCTGTCCCTCCTGGGTCGCTTCCCCTGCCGCCATTTCCGTTCTTCGGAAATCAGAATTCTGGTCCAGTGGCCAATCATGGTTCTGCATTTGTTCCATTTATTACTGCAACTACACATCCAAATGAACAGACTGTGGCCCCTTATGGGTCTCCGGCAATCGGATCTAGCAAGCAAGATACCGAAGTGGCGACTGAGCTTCAACTAAAGATGCCCGGTTCATCACCTTCGCAGCCGCTGCAGGTAAATTCGAGGATTACGAAGTCCGTGGAATTACAGAGAAAAGAACAAATTGCAGCAGACGGAAGTTCGTCGAGCGTATATTCATTGACCCAAGTTGAGGAGGATAGCTCGTGGAGCAGTGTGGGCAACGTTTTGAAGCCAAATGACGCAAAGTGA 1011 44.71 MNRWKAENFSQSFAADEVSPSTRLQPQSLPMSTNGSHASLSEFRSVQLIFDSRALYFLPIESLQRPDVERKDPIVTARKVQKADREKLRRDRLNELFLELENKLDPDKPKNDKATILTETIQILNDLTAEVNRLKAEFGTLSEESQELTQEKSELKEEKASLKSDIENLNTQYQQRLTVMFPWTHVESYPSVVMTGRPYSYTVPVAVPPGSLPLPPFPFFGNQNSGPVANHGSAFVPFITATTHPNEQTVAPYGSPAIGSSKQDTEVATELQLKMPGSSPSQPLQVNSRITKSVELQRKEQIAADGSSSSVYSLTQVEEDSSWSSVGNVLKPNDAK 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10141757 10143310 + BLOR13796 Blo04g00884 59912

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00884 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 148 IPR036638 GO:0046983
Blo04g00884 336 Gene3D - 126 174 - -
Blo04g00884 336 PANTHER TRANSCRIPTION FACTOR BHLH11 61 332 - -
Blo04g00884 336 MobiDBLite consensus disorder prediction 301 336 - -
Blo04g00884 336 Gene3D - 69 125 IPR036638 GO:0046983
Blo04g00884 336 SMART finulus 83 133 IPR011598 GO:0046983
Blo04g00884 336 Coils Coil 83 103 - -
Blo04g00884 336 PANTHER TRANSCRIPTION FACTOR BHLH121 61 332 IPR044579 GO:0003700|GO:0055072
Blo04g00884 336 Pfam Helix-loop-helix DNA-binding domain 78 127 IPR011598 GO:0046983
Blo04g00884 336 Coils Coil 117 172 - -
Blo04g00884 336 MobiDBLite consensus disorder prediction 302 329 - -
Blo04g00884 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 77 127 IPR011598 GO:0046983
Blo04g00884 336 MobiDBLite consensus disorder prediction 15 37 - -
Blo04g00884 336 CDD bHLH_AtILR3_like 82 156 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00884 - - - csv:101222613 278.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00884 Blo-Chr4:10141757 Blo15g00649 Blo-Chr15:18034416 6.42E-59 dispersed
Blo04g00884 Blo-Chr4:10141757 Blo03g01435 Blo-Chr3:40925272 5.31E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1114 Blo04g00884 . . . . . . . . . Cma03g00685 Cma07g00427 Car03g00631 Car07g00374 Sed14g1197 Cpe19g00860 Cpe10g00664 Bhi03g00866 Tan03g2084 Cmetu04g0958 . Hepe04g1592 . . Cla01g01980 Cam01g2074 Cec04g1733 Cco04g1798 Clacu01g2095 Cmu01g1971 Cre04g1646 Cone8ag0851 Cone12ag0715 . . Lsi01g00601 . . Cme08g00928 . . . . . . Bma03g00960 . Sed01g0221 Cmo03g00709 Cmo07g00424 . . . . . . Bhi10g01891 Tan05g1191 Cmetu11g1417 . Hepe08g0945 . . . . . . . . . . Csa06g03326 Chy02g00573 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001472 1 2 3 3 2 2 2 2 2 2 2 2 3 1 2 3 2 4 3 2 2 2 2 2 2 2 2 6 5 2 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12313 PF00010 HLH 3.30E-08 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00884 Blo_Chr04 FPKM 2.180202 0.0 2.088663 3.527758 2.495563 0.0 3.005162 2.916998 2.928268 3.258806