Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00894 ATGCGGGCCCTTTGTGACTCCTGCGAAACTGCACCAGCAATTGTGTTTTGCGCCGCCGACGAAGCTGCCCTTTGCGGCACCTGTGACGAGAAGAATGAAAGATATCCAATTCATATGATGAATATCTATGCAACTACATTATCTGTGGTTGAACTCCATTTCTGTAAATCAAGATTGCAAAAATTTAAACATATTGTTTTGGTCCATTTGTGTAATAAGCTTGCTAAGCGACATATAAGGGTAGGACTAGCGAATCCAAGTGATGTTCCTCATTGTGATATATGCGAAAATTCACCCGCATTCTTCTACTGCGAGGTAGATGGCAGTTCCCTTTGTTTGCAGTGCGATACACTTGTTCACGTCGGGGGTAAAAGAACTCATAAAAGATACCTTCTGCTAAGGCAGAGAGTCGAGTTTCCGGGCGACAAACTTGGTGTTCTTGATGATCCAGCTCCACCAACCACCGATGGTGCTGAGACGAGACGATTACTAAATCAACCACAGAAAGTTACTGAGGGAGAGAGGCGGCCAAGTGATTCCCAATTGTCTGATCCGTATGATGTTGATGATGGGCTTGTTGAGACGGATACTGCAATGATTGATCTGAACATGAAGCCTCATCGGAATCCTGGACAAGCTTCAAATGATCAGGTGCGAGGGGATTTTGAGAAATGGAAATCGCGGGCAGATTGA 693 44.88 MRALCDSCETAPAIVFCAADEAALCGTCDEKNERYPIHMMNIYATTLSVVELHFCKSRLQKFKHIVLVHLCNKLAKRHIRVGLANPSDVPHCDICENSPAFFYCEVDGSSLCLQCDTLVHVGGKRTHKRYLLLRQRVEFPGDKLGVLDDPAPPTTDGAETRRLLNQPQKVTEGERRPSDSQLSDPYDVDDGLVETDTAMIDLNMKPHRNPGQASNDQVRGDFEKWKSRAD 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10317171 10318333 + BLOR13806 Blo04g00894 59922

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00894 230 MobiDBLite consensus disorder prediction 203 230 - -
Blo04g00894 230 CDD Bbox1_BBX-like 92 132 - -
Blo04g00894 230 CDD Bbox1_BBX-like 4 83 - -
Blo04g00894 230 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 219 - -
Blo04g00894 230 MobiDBLite consensus disorder prediction 168 183 - -
Blo04g00894 230 SMART bboxneu5 87 132 IPR000315 GO:0008270
Blo04g00894 230 SMART bboxneu5 1 52 IPR000315 GO:0008270
Blo04g00894 230 ProSiteProfiles Zinc finger B-box type profile. 87 132 IPR000315 GO:0008270
Blo04g00894 230 MobiDBLite consensus disorder prediction 143 190 - -
Blo04g00894 230 Pfam B-box zinc finger 89 128 IPR000315 GO:0008270
Blo04g00894 230 ProSiteProfiles Zinc finger B-box type profile. 1 33 IPR000315 GO:0008270
Blo04g00894 230 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 219 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00894 - - - tcc:18610806 248.054
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00894 Blo06g00321 CCT
Blo04g00894 Blo06g00321 ECH
Blo04g00894 Blo16g00074 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00894 Blo-Chr4:10317171 Blo06g00321 Blo-Chr6:18407264 7.47E-77 dispersed
Blo01g01583 Blo-Chr1:55642228 Blo04g00894 Blo-Chr4:10317171 8.33E-12 wgd
Blo16g00074 Blo-Chr16:2107024 Blo04g00894 Blo-Chr4:10317171 1.14E-95 wgd
Blo18g00789 Blo-Chr18:22814417 Blo04g00894 Blo-Chr4:10317171 7.60E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1083 Blo04g00894 Blo16g00074 . Bda10g00172 . Bpe13g00423 . Bma15g00960 Cmo04g00794 . Cma03g00703 Cma07g00442 Car03g00645 Car07g00389 . Cpe19g00845 Cpe10g00649 Bhi03g00888 . . . . . . Cla01g01962 Cam01g2052 Cec04g1710 Cco04g1775 Clacu01g2073 Cmu01g1950 Cre04g1625 . . Cone6ag1668 Cone9ag1590 Lsi01g00620 . . Cme08g00909 . Blo06g00321 Bda11g01843 . . . . Bma06g00103 . Cmo03g00728 Cmo07g00440 . . . . . . . . . . . . . . . . . . . . . Csa06g03304 Chy02g00591 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo16g00936 . 175 518 C2C2-CO-like Transcription Factor Family AT5G57660 53.1 6.2e-65 245.0
Blo04g00532 . 1 191 C2C2-CO-like Transcription Factor Family AT1G75540 56.5 3.5e-54 209.1
Blo07g00980 . 1 295 C2C2-CO-like Transcription Factor Family AT1G78600 51.2 3.3e-73 272.3
Blo06g00321 CCT,ECH 1 177 C2C2-CO-like Transcription Factor Family AT2G21320 62.1 2.2e-52 202.2
Blo16g00074 BCT,CCT,ECH 1 181 C2C2-CO-like Transcription Factor Family AT2G21320 56.4 1.2e-50 196.4
Blo06g00321 CCT,ECH 1 176 C2C2-CO-like Transcription Factor Family AT4G38960 62.1 1.3e-53 206.5
Blo16g00074 BCT,CCT,ECH 1 179 C2C2-CO-like Transcription Factor Family AT4G38960 58.1 8.2e-53 203.8
Blo04g00894 BCT,CCT,ECH 1 143 C2C2-CO-like Transcription Factor Family AT4G38960 60.1 9.1e-44 173.7
Blo04g00532 . 1 184 C2C2-CO-like Transcription Factor Family AT4G39070 55.4 3.4e-54 208.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004570 3 1 3 2 1 1 2 1 1 0 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 0 1 2 2 2 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12315 PF00643 zf-B_box 2.00E-07 No_clan Blo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00894 Blo_Chr04 FPKM 21.820492 21.536673 11.852425 13.81276 21.335655 17.351797 22.863176 10.134087 8.648341 8.849199