Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00896 ATGGCCCAAGTAGAGGTGGCTAATAGGCAGGCTGGCGAGCCGAGCCCAAAAACTGGGGCTCACGAGCCCGCCGAGCCCGTGCTCGCGAGCTTGGCCCGTGGGCTGGCTCGAGAGCCTGGTTGGCTGGCCCGACGAGCCCGCCCGCCACTCGCCAGCCACCCCTGTAGCACAGCTTCGCAGTCGTTGTTGCAGGTTCGCAGTGCTCGTCGTAGCTTCGCAGTGCTTGTCGAAGCTTTGCGGTGCTCGTCGCAGCTTCGTGGTGTTCGTCCCACTTTCACAGACATTGTCGCAGCTTCGACTCGCCGGTTGTATTTTCCAGGTGAAGAACAAGCTTCGATATTGTATAAACCTCGTCTTGAAGATGAAGGGCAGCTGCAGCTGGGAGGCCATGGGATTGACAATTCGGCGCCAAGCTTGGACCTTATGGATGTTGATCAGTGCCAATCTGTTGGAGATATGGACGATTCGCAACTCCTCGGAGCTTCGGACTCTGTGCCTGCTGAAGGCGGGGATGGTCGGGCAGCTGGGGCGGATGGTCCTTCTCCTGAGATTGACTTGAAGGTTGACGTAGAGGCGAAGACGAGGGCGGAGGAGCTTACTTTGGTTAAGCGAAGACGAGGTCGGCCTCCTAGGGGTCAACCAAAAGCGACGCCTCTACCGAGTAAGAGCGTTACCAAGGATGAAGAGGATGTCTGTTTTATTTGCTTTGATGGTGGGAGCCTTGTTCTCTGCGATCGCCGGGGCTGCCCCAAGGCCTATCACCCTGCTTGCATCAAGAGGGATGATGCATTCTTTCAATCAAAAGCTAAATGGAATTGTGGATGGCATATATGCAGCAGTTGTCGGAAGGCATCGCACTATATGTGTTATACATGTACCTTTTCTTTGTGCAAAGGGTGCATTAAAGATGCTGATTATCAATGTGTAAGGGGAAGCAAAGGGTTGTGTGGAACATGTATGAGAACTATAATGCTATTGGAGAAAAGCTTGCTAGGAAATAGTGAAGTAGCTCAAGTTGATTTTGATGACAAAAGTAGTTGGGAATATCTTTTCAAAATATATTGGGTATACTTAAAACAAAAGCTCTCTTTAACTCTTGATGAACTCACTCGCGCTAAAAATCCGTGGAAAGGAGGTGGGACCATGGATCAAAATGGAGGGTTTCTTGGCAACTGTTGTGATGCTAATGATAGCAAGAGTGGTGGTTCAGATAGTGCCAGTAGAGGCATGGAGGCTGCCAATTCTAAGAGGAAGGCATTTAAGAGGCAACAGAATTTTTCCTGCAAGGTAGAATTTTTAATTGAAAACTCAATTGATGATAAGATGATGACATCAACTGAAGGAAAGGTTTGGGCTTCGAAGGAGCTTCTGGAGTTTGTTGCACACTTGAGAAATGGTGATATGTCTGTGCTTTCGCAGTCTGATGTAGAGTCTTTAGTGCTAGAATATATTAAGGAAAACAATCTTCGTGATCCTCAACAGAGAAGTCAAATTATTTGTGATCGTATGCTGATGAATCTGTTTGGAAAACAGCGAGTTGGTCATGTTGAAATGATCAAGCTTCTTGAATATCATTTGCTCTCTAAAGAAAATTCTTCATCTGCTGACAGAAATAGTAAAGTTCTTGACATCCCAGTTAGCCAGGCGGAAGTGAAGGGAAATTTTAGTTACCAATCAATAACTGATAGTGATAGGAAGCATAGAAAGCGGAAAAAGGAAGACGATAGGAAGCAACGAAAAAATCCTGATGAATATGCAGCTATTAATGTTCACAACATTAACCTGATTTACTTACCACGAAATTTAATAGAGACCATTAGGGGTGATACTGAAAATTTTCATGACAAAGTTGTGGGTTCAATAGTGCGAATACAAATTTCAAGGTGTGATCAAAAGCCTGACGTGTATAGGCTTGTCCAAGTTGTAGGCACGAGCAAGAGTTCTGAACCATATGCGATTGGTGAGAAAAAAACTGATGTAATGCTTGATATATTAAATTTAGACAAGAAAGAGGCAATATCGCTTGAAGGGATTTCAAATCAACAATTTTCTGAGGATGAATGCAGGCGTCTACAAGGGAGTGTAAAATGTGGGCTTCTGAAGAGATTTACTGTGGGAGAGATTCAGAAGAAAGCAATGACACTTCAAGCACTGAAGGTTAATGATCTGCTGGAATCAGAGATGTTGCGGCTTAACCATCTTCATGACAGAGCTAGTGAAAAGGGAGACGGAAAGGAATATCCTTTTGGGATATACAATTTAGTTTGGGTTCATCATAAGGAGAAAAAGGTAATATATTTTGTGCTAAAAATGAATTCCTTGACTATTTTCCATACGTGTAAAGAGTTAGTGGAGAAATTACAGCTTCTTAGATCCCCCGAAGAACGACAGCGTCGACTTGCTGAAATTCCTGAAATACATGCTGATCCAACTATGGATCCAAGTTATGAATCTGATGATCATACACAAGAATTAAAAAAGGCCAAACAAGGTGGCTTTAAGAAAACACGTAAAACTGGTTCTGGTGGGAGGGGGGATGACCTAATATATCATTGCGGAGGACATGATATATCATTTGATTCTAGAAGCAGAAAACAAAATCATTCGGCTAATACTTCAGAACAAAACACGAACATATGTAAAGCAGAACAAAACACGAACATATATACAGCAGATCATGTTGACAAAGAAGGTGCTTCCTGGCCTATAGACACAATGCTTGAATCATCATGGTTGGGAAGCAAGTCACCTAGTGTACCAAAGAACCATGGAATTCCTACTAGTTTAATGATAAATAATGGGAGTAATCAAGCTGTTGTTTCAGAGGTGTTGCTGCCTCCTCTTTCTAATAGGATAGAACACTTTATGAATGATACTGATATGGAAAAGATGTGGCACTACCATGACCCCGCTGGAAATGTTCAGGGTCCTTTTTCAATGGTGCAGCTGCAAAAATGGAGTTCAAGTGGACACTTTCCCCATCATTTAAGAATTTGGAAGATAAGAGAAATGCCCAGTGATTCTATACTTTTAACTGATGCGTTGATGGCTCAAGACAGTAAGAAGTCCCTCCTGCGCTATAAGAACCAGGTACTGTCTGCAATTGGGCTATGTTCTGATGATGGTGAAGAACAGTCCAATGATGAGTGGAGTCGAAATCTACATACTAATGAATCAGGTTCTCCTCCAGATTGGAATCGAACAGCAGATGTAGTCAACTCCAGTGAGTGCCAGCCAAAAAGTTTTGAGCAAAGAACTGCAAATGAAGATAGCACAGGTACTCACCAGTCCCAAGTGCATGAACTCAGTATATCACCAACATTATCTGCTCAGCCACTTCAATTCTCAAATCAAATAGGGGAAGTTTATGGGGGTGAGAAAAGCACTAGTCCAACTCTTGGGAACCAGAGTTCACTTAAAACCATTGAGGTTGAAGCTAACAGTGGACAGAGCTGTGAGAAACGTTCTGACAGCGAGTGCTGTTCTGGGCAATCTTCTGGTCAAAATTGGAGACCTCAACCTGGGAATGCTACCCAGGATTCTCCAAACGGTGTCATTTCTTCTGCCAAGTCAACTGAACAACAAAATTGCAACCTTGATTTCCCTGATCTTCCCTGCCCTACACCAAAGGCAGATGTAGGCATTACAGGTCAAGCTACTGAAATCAAGCAATCTGCTTCGTCAGGTGTTCTTATTCAAGATTCAGTCCCTAGCTGGAGTACTGGTTCAAGTTTAGTGGGTGGGAGGAGACAGCTTCCTGATGTTGCTGGTGGTTGGGGTGTTTATTCTGCTGCACCAACCAAAGCTTCTACTGAGGAACGGGACTCCAGTCTTATTACTGCATCTTCTCTGAAACCAGCTGAATTTATCAGTGATTGTGCTGCTACGCCTGCTTCAGTAAATGATCAATTCACACACCCTTCACCCTCTCATCCTGCATCAAATGTATCTGATTGGCCAGAAATTATTGAGCCTAATGAATTCAACTCCTTGGGAGACGAATCACTCTCAGATTTGCTTGCAGAAGTTGAAGCTATGGAATCTTTACACGAATTGGCTTCGTCAACATCAATTATGAACTGCCGTGATGATTTGACACATGGTTGTAAAATTGATTGTTTCAGCCCTATAGGGCGCTTGAGTCCTAATCCAGAGATGGGAAAAGGCGATGCTTTGAGTTCCACCGGTGATGGACATGTCCAATCGCAATCAACAATTACAGACGAACCACTTCTGAGATTGCACGTGTTTGATATTGATCCCCAAATGAAATTGGCCGGCCGTTCGTCAATGAGTGCTGATGTGGACATAAAAAAGAAATACAATGATGTTTCAACCAATCAATGGAAAGGTGGTACAGTTCTCCAAAACTTGACGCACTTCTCGGCAGCTTTAAACATGGACACTGCAGAAAACACATGGAGAATAGGATCAGAAGCTACTTGGGGAAGTGCAGATATTGGGTGGGGAGGGCTAAACAAAGGAAATCCAAGCGGCGGCTGGGAAATTCGACCAGATTCAATTCAAGAAATGGGAAGCATGAATTCATGCACATCAGCTGGAAACAACACAACCAATTGGCATGGCCAACCAAAATGCAGTCTTGACAGGCTACTGAGCCCGAGAGATCGAAGTAATCAGGGAAGGGACTTAGATAACGGTAGAGGTAGGTCTTTCTGGAATAAGCAACCTGGATTTGGAGGTGGCAATAGAAGTGGAACATCCCGTCCTTCTCCGAGAGGGCAAGGCCAACGACGAATTGAAGCAATGGGCAGGCAAATTGAAGAGCTCACTGCCCTTCAACAAATGCTTGTGGATGAACTAAGGAGGCGTGTGAATCCTTTAACAGGCCCTCCATCTCACGACGGATGCCTATCTCTTACCATCAGACAATCATCCTCTCCTTATACTCTTGCTAAAATTCAGAAGATATTGGCAACGAGTCCTCCATCGAATAAAGCAGTTCCAGGACCTACTTCATATCAAAATTTGCACATGCGTGACACATTGAACGAGGGAAAAATAGTTGATGCCCAAGTGAAGAACTCACTTATGACTCTTGGATGGATTAATTGGGATACCTTGCGACAACAGATGTCGATACTGCCTCGTTTAGAAGCAATGTTACTGAAGATGGAGGAAGCTTTCCATTTAATTCCGGAGTTAAGGGTGGACCTTACTCAGTTTCGAGCAGAGTTCCGACGACGTCCAGAAATTCCACCTAATGTTAGTCCGACAATCAACAAAAGAAAAGGGGTACTGGGTATTGATGATTTTGACTCTCGTAATCTGATCCAGTGCCAAACTACAACGATCATGGGTGTCCGCCGGTTGTGGGTAGACGCAAGGAGCAGAGGAACCGTGGTTACCTGCGATCTGATTTGTATCAAAATGAGGATGCTTGGGACAAAGCTGATTTTCATCACAGTGGAGAGAGAAATTCTTATTTTTTAA 5454 43.95 MAQVEVANRQAGEPSPKTGAHEPAEPVLASLARGLAREPGWLARRARPPLASHPCSTASQSLLQVRSARRSFAVLVEALRCSSQLRGVRPTFTDIVAASTRRLYFPGEEQASILYKPRLEDEGQLQLGGHGIDNSAPSLDLMDVDQCQSVGDMDDSQLLGASDSVPAEGGDGRAAGADGPSPEIDLKVDVEAKTRAEELTLVKRRRGRPPRGQPKATPLPSKSVTKDEEDVCFICFDGGSLVLCDRRGCPKAYHPACIKRDDAFFQSKAKWNCGWHICSSCRKASHYMCYTCTFSLCKGCIKDADYQCVRGSKGLCGTCMRTIMLLEKSLLGNSEVAQVDFDDKSSWEYLFKIYWVYLKQKLSLTLDELTRAKNPWKGGGTMDQNGGFLGNCCDANDSKSGGSDSASRGMEAANSKRKAFKRQQNFSCKVEFLIENSIDDKMMTSTEGKVWASKELLEFVAHLRNGDMSVLSQSDVESLVLEYIKENNLRDPQQRSQIICDRMLMNLFGKQRVGHVEMIKLLEYHLLSKENSSSADRNSKVLDIPVSQAEVKGNFSYQSITDSDRKHRKRKKEDDRKQRKNPDEYAAINVHNINLIYLPRNLIETIRGDTENFHDKVVGSIVRIQISRCDQKPDVYRLVQVVGTSKSSEPYAIGEKKTDVMLDILNLDKKEAISLEGISNQQFSEDECRRLQGSVKCGLLKRFTVGEIQKKAMTLQALKVNDLLESEMLRLNHLHDRASEKGDGKEYPFGIYNLVWVHHKEKKVIYFVLKMNSLTIFHTCKELVEKLQLLRSPEERQRRLAEIPEIHADPTMDPSYESDDHTQELKKAKQGGFKKTRKTGSGGRGDDLIYHCGGHDISFDSRSRKQNHSANTSEQNTNICKAEQNTNIYTADHVDKEGASWPIDTMLESSWLGSKSPSVPKNHGIPTSLMINNGSNQAVVSEVLLPPLSNRIEHFMNDTDMEKMWHYHDPAGNVQGPFSMVQLQKWSSSGHFPHHLRIWKIREMPSDSILLTDALMAQDSKKSLLRYKNQVLSAIGLCSDDGEEQSNDEWSRNLHTNESGSPPDWNRTADVVNSSECQPKSFEQRTANEDSTGTHQSQVHELSISPTLSAQPLQFSNQIGEVYGGEKSTSPTLGNQSSLKTIEVEANSGQSCEKRSDSECCSGQSSGQNWRPQPGNATQDSPNGVISSAKSTEQQNCNLDFPDLPCPTPKADVGITGQATEIKQSASSGVLIQDSVPSWSTGSSLVGGRRQLPDVAGGWGVYSAAPTKASTEERDSSLITASSLKPAEFISDCAATPASVNDQFTHPSPSHPASNVSDWPEIIEPNEFNSLGDESLSDLLAEVEAMESLHELASSTSIMNCRDDLTHGCKIDCFSPIGRLSPNPEMGKGDALSSTGDGHVQSQSTITDEPLLRLHVFDIDPQMKLAGRSSMSADVDIKKKYNDVSTNQWKGGTVLQNLTHFSAALNMDTAENTWRIGSEATWGSADIGWGGLNKGNPSGGWEIRPDSIQEMGSMNSCTSAGNNTTNWHGQPKCSLDRLLSPRDRSNQGRDLDNGRGRSFWNKQPGFGGGNRSGTSRPSPRGQGQRRIEAMGRQIEELTALQQMLVDELRRRVNPLTGPPSHDGCLSLTIRQSSSPYTLAKIQKILATSPPSNKAVPGPTSYQNLHMRDTLNEGKIVDAQVKNSLMTLGWINWDTLRQQMSILPRLEAMLLKMEEAFHLIPELRVDLTQFRAEFRRRPEIPPNVSPTINKRKGVLGIDDFDSRNLIQCQTTTIMGVRRLWVDARSRGTVVTCDLICIKMRMLGTKLIFITVEREILIF 1817
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10335718 10359394 + BLOR13808 Blo04g00896 59924

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00896 1817 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 136 1583 - -
Blo04g00896 1817 Pfam Plus-3 domain 592 695 IPR004343 GO:0003677
Blo04g00896 1817 SMART rtf1 587 697 IPR004343 GO:0003677
Blo04g00896 1817 MobiDBLite consensus disorder prediction 1511 1531 - -
Blo04g00896 1817 ProSiteProfiles SWIB/MDM2 domain profile. 445 528 IPR003121 -
Blo04g00896 1817 MobiDBLite consensus disorder prediction 860 879 - -
Blo04g00896 1817 CDD GYF 962 1015 IPR003169 GO:0005515
Blo04g00896 1817 SMART gyf_5 963 1018 IPR003169 GO:0005515
Blo04g00896 1817 MobiDBLite consensus disorder prediction 1511 1586 - -
Blo04g00896 1817 SMART PHD_3 231 277 IPR001965 -
Blo04g00896 1817 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 224 319 IPR013083 -
Blo04g00896 1817 MobiDBLite consensus disorder prediction 864 879 - -
Blo04g00896 1817 MobiDBLite consensus disorder prediction 152 184 - -
Blo04g00896 1817 MobiDBLite consensus disorder prediction 1 26 - -
Blo04g00896 1817 ProSitePatterns Zinc finger PHD-type signature. 232 292 IPR019786 -
Blo04g00896 1817 CDD PHD5_NSD 231 276 - -
Blo04g00896 1817 Pfam GYF domain 965 1002 IPR003169 GO:0005515
Blo04g00896 1817 SMART swib_2 446 531 IPR019835 -
Blo04g00896 1817 MobiDBLite consensus disorder prediction 1039 1098 - -
Blo04g00896 1817 Gene3D - 588 717 IPR036128 GO:0003677
Blo04g00896 1817 SUPERFAMILY Plus3-like 588 717 IPR036128 GO:0003677
Blo04g00896 1817 MobiDBLite consensus disorder prediction 1537 1551 - -
Blo04g00896 1817 Pfam SWIB/MDM2 domain 453 526 IPR003121 -
Blo04g00896 1817 SUPERFAMILY SWIB/MDM2 domain 447 530 IPR036885 -
Blo04g00896 1817 MobiDBLite consensus disorder prediction 808 847 - -
Blo04g00896 1817 MobiDBLite consensus disorder prediction 1148 1198 - -
Blo04g00896 1817 ProSiteProfiles GYF domain profile. 962 1016 IPR003169 GO:0005515
Blo04g00896 1817 MobiDBLite consensus disorder prediction 560 583 - -
Blo04g00896 1817 MobiDBLite consensus disorder prediction 1052 1098 - -
Blo04g00896 1817 Gene3D SWIB/MDM2 domain 439 536 IPR036885 -
Blo04g00896 1817 CDD SWIB-MDM2_like 450 526 - -
Blo04g00896 1817 Gene3D - 963 1019 IPR035445 -
Blo04g00896 1817 MobiDBLite consensus disorder prediction 808 830 - -
Blo04g00896 1817 MobiDBLite consensus disorder prediction 198 223 - -
Blo04g00896 1817 SUPERFAMILY GYF domain 959 1015 IPR035445 -
Blo04g00896 1817 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 136 1583 - -
Blo04g00896 1817 ProSiteProfiles Plus3 domain profile. 587 720 IPR004343 GO:0003677
Blo04g00896 1817 SUPERFAMILY FYVE/PHD zinc finger 220 276 IPR011011 -
Blo04g00896 1817 MobiDBLite consensus disorder prediction 1565 1581 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00896 - - - qsu:112033591 1255.74
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00896 Blo16g00072 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00896 Blo-Chr4:10335718 Blo05g00448 Blo-Chr5:6223853 2.22E-23 dispersed
Blo04g00446 Blo-Chr4:3685023 Blo04g00896 Blo-Chr4:10335718 9.74E-48 transposed
Blo04g00538 Blo-Chr4:4629142 Blo04g00896 Blo-Chr4:10335718 0 transposed
Blo12g00374 Blo-Chr12:20122809 Blo04g00896 Blo-Chr4:10335718 5.50E-08 transposed
Blo16g00072 Blo-Chr16:2065051 Blo04g00896 Blo-Chr4:10335718 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1077 Blo04g00896 Blo16g00072 . . Bpe15g00463 Bpe13g00425 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1664 . . . Chy07g01268 . . . Bda11g01845 . . . Bma03g00971 Bma06g00105 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00533 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005786 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12316 PF03126 Plus-3 2.50E-20 No_clan Blo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00896 Blo_Chr04 FPKM 0.545833 0.785258 1.326675 1.897813 1.349659 2.7624 1.479662 0.937579 0.812164 0.827878