Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00899 ATGGAATGCGTAGAGTTGGCTTTGAAATCTAGTTTTAGAAAGAAGATGTTCATGAATTTGAGCCCTCAACTACGTTTTAATGAATCAGGGTCGTTAAGTGCTGAAAATGTCGATTCATGTGATGACTTTTCTGTAGACGAACTCCTTAATTTCTCTTACGAAGATGAATATGAAGAGCCAGAGGATGGAGAAGAAGAAAAACGAGAAGAAAACGAACACGACAAGGGCTTTGCCTCTGTCTCTGTTTTGTCTCAAGAACTGCTGGAAAACTGCGAAAACCCGAATGAAAGCTCGAGTTTGTGTGTTGAAGACGGATTCGTCTCTTTACCCACGAGCGAACTCAGTGTTCCGGCCGATGATTTGGCGGACCTTGAATGGTTGTCCCATTTCGTCGAGGATTCTTTCTCCGCCTACTCTGCGCCATTTCCGGCAGGAATTTGGGCCGGTAAGTCGAATCAGAGAGAAACAATAAAGGAACCCGAGGCTTTTATTTCCCCGAAACTCGAAACTCAGTTTCCGGCGAAGGCGAGAAGCAAGCGGGCAAGAGCCGGAGGTAGGTTTTGGGTTCTAGGATCCCCTACGTTAACGGAATCTTCGTCAAGCTCAACTACGTCTTCGTCGTCGACTTCATCACCGTCAAGCCCCTTGCTTTTATACAACACCGCGGTTCCTCTCCTCGACAAGACAGTTTTCCCGTTCGAAAAGCCACTTGCGAAGAAACCGAAGAACAGACCCCCAGTCAACGGAAATGGCGGAAGTGGGACCCAGACAAGTCGCAGGTGCAGCCATTGCGGCGTTCAGAAAACGCCACAGTGGAGGGCCGGCCCTCTCGGGGCGAAGACACTCTGCAACGCGTGTGGTGTTCGATACAAGTCGGGTCGACTCCTACCCGAATACAGACCTGCTTGTAGCCCCACTTTCTCCAGCGAATTGCACTCAAACCATCACCGGAAAGTGCTGGAAATGCGCCGAAATAAGGATACTCCGTCACAACTGGAGAGGGAAACAGAAAACTGA 1017 49.26 MECVELALKSSFRKKMFMNLSPQLRFNESGSLSAENVDSCDDFSVDELLNFSYEDEYEEPEDGEEEKREENEHDKGFASVSVLSQELLENCENPNESSSLCVEDGFVSLPTSELSVPADDLADLEWLSHFVEDSFSAYSAPFPAGIWAGKSNQRETIKEPEAFISPKLETQFPAKARSKRARAGGRFWVLGSPTLTESSSSSTTSSSSTSSPSSPLLLYNTAVPLLDKTVFPFEKPLAKKPKNRPPVNGNGGSGTQTSRRCSHCGVQKTPQWRAGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRNKDTPSQLERETEN 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10469409 10470515 - BLOR13811 Blo04g00899 59927

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00899 338 MobiDBLite consensus disorder prediction 311 338 - -
Blo04g00899 338 MobiDBLite consensus disorder prediction 236 261 - -
Blo04g00899 338 Pfam GATA zinc finger 261 295 IPR000679 GO:0006355|GO:0043565
Blo04g00899 338 PANTHER GATA TRANSCRIPTION FACTOR 1 328 - -
Blo04g00899 338 MobiDBLite consensus disorder prediction 54 76 - -
Blo04g00899 338 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 256 317 - -
Blo04g00899 338 SMART GATA_3 255 309 IPR000679 GO:0006355|GO:0043565
Blo04g00899 338 MobiDBLite consensus disorder prediction 310 338 - -
Blo04g00899 338 ProSiteProfiles GATA-type zinc finger domain profile. 255 291 IPR000679 GO:0006355|GO:0043565
Blo04g00899 338 MobiDBLite consensus disorder prediction 195 214 - -
Blo04g00899 338 PANTHER GATA TRANSCRIPTION FACTOR 1 328 - -
Blo04g00899 338 Gene3D - 253 335 IPR013088 GO:0006355|GO:0008270
Blo04g00899 338 PIRSF Txn_fac_GATA_plant 1 338 IPR016679 GO:0003677|GO:0005634|GO:0045893
Blo04g00899 338 ProSitePatterns GATA-type zinc finger domain. 261 286 IPR000679 GO:0006355|GO:0043565
Blo04g00899 338 CDD ZnF_GATA 260 308 IPR000679 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00899 - - - zju:107410110 333.569
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00899 Blo16g00063 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00646 Blo-Chr2:15245325 Blo04g00899 Blo-Chr4:10469409 1.61E-61 dispersed
Blo04g00899 Blo-Chr4:10469409 Blo06g00706 Blo-Chr6:30149587 8.18E-47 dispersed
Blo16g00063 Blo-Chr16:1975158 Blo04g00899 Blo-Chr4:10469409 1.46E-140 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1071 Blo04g00899 Blo16g00063 Bda04g00030 . . Bpe13g00427 . . . . Cma03g00704 . Car03g00646 . Sed07g1682 . Cpe10g00648 Bhi03g00894 Tan03g2048 Cmetu04g1399 . Hepe04g1570 . . Cla01g01957 Cam01g2046 Cec04g1704 Cco04g1769 Clacu01g2068 Cmu01g1945 Cre04g1619 . . . . Lsi01g00626 . Chy07g01272 Cme08g00904 . . Bda11g01846 . . Bpe06g00027 Bma03g00976 . . Cmo03g00730 . . Cma20g00811 . . . . Bhi10g01940 Tan05g1237 . . Hepe08g0974 . . . . . . . . . . Csa06g03299 Chy02g00597 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008902 3 0 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 2 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12317 PF00320 GATA 2.00E-16 CL0167 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00899 Blo_Chr04 FPKM 1.466667 2.086267 1.772474 3.219097 2.138351 3.338265 3.125047 1.575778 1.618464 1.795795