Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00900 ATGCACTCGTCAGCCTTCGGGCTAGCCATGGGTCCAACGCAGGGCTCAATCGTCGTCTCCGGAGAGTCGTCGTCCAGATCGGCGATGATGGTTATAAGTTCGGGAAGCGGAGGAGGAATGAGTTGCCAAGATTGTGGAAATCAAGCGAAGAAAGACTGCGTTTACATGAGGTGTAGAAGTTGCTGCAAGAGCCGAGGGTTTGAGTGCTCCACTCATATTAAAAGCACATGGGTTTCTGCTGCTAAGCGACGAGAACGACTCAGTAACTTGGAAAATCAGAAGAAGCAATTTCATCTTCTTCACCAAGAGATTCCGAAAAGGCAGAGAGAGAATCTGTGTTCTTCTTCACTTGTCTGCACCCCAATTGCGTCAGGGTTTGAAGACGGAATTTTTCCACCCGAAGTAAGTTCTCCAGCTGTTTTCCGTTGCGTTAGAGTGACCCCGTTTGATGAGACAGACGACCATTATGCGTATCAGACGGCTGTAAATATCGGAGGCCATGTGTTCAAGGGAATTCTCTACGATCAAGGCCGTGAACCAAACTACGCCACAGGCGAAAGCTCCTCCGTGGGCGGCAGCTGTGGAACCCAATCACTTGATCTGATAGCCACTGGAACAACTGCAGTTGGGGACAGCGCAGTAGCAATAGCGTCTTCGCCTGCAGCTCCATTAATTGCTCCTTTATATCCAGCTCCTCTTAACAGCTTCATCGCTGGTACGCAATTTTTCCTCCCGCCAAGACCTTAA 747 49.67 MHSSAFGLAMGPTQGSIVVSGESSSRSAMMVISSGSGGGMSCQDCGNQAKKDCVYMRCRSCCKSRGFECSTHIKSTWVSAAKRRERLSNLENQKKQFHLLHQEIPKRQRENLCSSSLVCTPIASGFEDGIFPPEVSSPAVFRCVRVTPFDETDDHYAYQTAVNIGGHVFKGILYDQGREPNYATGESSSVGGSCGTQSLDLIATGTTAVGDSAVAIASSPAAPLIAPLYPAPLNSFIAGTQFFLPPRP 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10559249 10560395 + BLOR13812 Blo04g00900 59928

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00900 248 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 41 83 IPR006510 -
Blo04g00900 248 Pfam Domain of unknown function (DUF702) 39 179 - -
Blo04g00900 248 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 131 177 IPR006511 -
Blo04g00900 248 PANTHER PROTEIN SHORT INTERNODES 8 244 - -
Blo04g00900 248 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 8 244 IPR007818 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00900 - - - jre:108992063 269.626
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00900 Blo06g00331 CCT
Blo04g00900 Blo05g00815 CCT
Blo04g00900 Blo06g00331 ECH
Blo04g00900 Blo05g00815 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00900 Blo-Chr4:10559249 Blo06g00331 Blo-Chr6:19623522 2.44E-80 dispersed
Blo01g01581 Blo-Chr1:55617084 Blo04g00900 Blo-Chr4:10559249 2.31E-73 wgd
Blo18g00791 Blo-Chr18:22983635 Blo04g00900 Blo-Chr4:10559249 6.97E-70 wgd
Blo04g00900 Blo-Chr4:10559249 Blo05g00815 Blo-Chr5:29760986 6.63E-72 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1063 Blo04g00900 . . Bda10g00166 . . Bma09g00096 Bma15g00973 . Cmo16g00699 Cma03g00708 Cma07g00452 Car03g00648 Car07g00399 Sed14g1169 Cpe19g00837 . Bhi03g00899 Tan03g2042 Cmetu04g2849 . Hepe04g1564 . . Cla01g01952 Cam01g2041 Cec04g1699 Cco04g1764 Clacu01g2063 Cmu01g1940 Cre04g1614 Cone8ag0832 Cone12ag0735 Cone6ag1659 Cone9ag1584 Lsi01g00631 . Chy07g01266 Cme08g00899 Blo05g00815 Blo06g00331 . . Bpe10g00138 Bpe06g00032 Bma03g00977 . . Cmo03g00734 Cmo07g00450 Cma16g00640 . . . . Cpe14g00546 . . . . . . . Cla07g00839 Cam07g0908 Cec07g0963 Cco07g0951 Clacu07g0884 Cmu07g0883 Cre07g1245 Lsi07g00230 Csa06g03294 Chy02g00602 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001605 2 3 3 3 2 2 4 2 2 2 2 2 4 2 2 3 2 2 4 2 2 2 2 2 2 2 2 3 2 2 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12318 PF05142 DUF702 5.90E-60 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00900 Blo_Chr04 FPKM 9.39366 11.031226 4.125854 4.333513 13.412896 12.589972 14.026943 3.191516 2.761735 3.472684