Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00912 ATGACAAAATCGTTATTAAGTTATGTGGAATTGAAGAAACAAGCAATGAAAGACATGGAAGCCGATTCCGACATAGAAACAGGCCAACTCAATCCTGCCGCTGAACATTATCTCTCCAAGTTCTTTGAAGAAGCGGGCCAAGTCAAAACTGAAATGGAAGAGATCACCAATCTCTTGATCGAACTTCAAACACTCAATGAGGAGGCGAAGTCCATTTTCAGCGCCAAGATTCTTGGTGGGCTAAGAGATCGAATGGATTCAAACATGGTTTCAATCCTTCGCAAAGCAAAGAGGGTGAAGTCTAGGCTGGAAGCGCTCGATCGATCCAACGTAAAAAATGGAAGAAATTCAGAAGCCTTTAAAGAAAGCAGTCATGTTGACAGAATCAGGATTTCTGTCACTAACGGTTTAAGAGTCAAGCTGAGAGAATTGATGAATGATTTTCAGTTCTTGAGAGAGAAAATTCTACGCGATCATAAGGAAGATCTAAGGAGGACGTACTACACTGCAACAGGCGAGCAACTGAGTGAGGAAGTGATTGAGAAAATAGTCATGGGGGGCGAGAGAATTGACTTATTTCAGGGTAATAAAGCCAAACACCAGGCTGTTTTAGAGGTTCAGAGGAGCTTGAATAAGCTTCATCAGGTTTTTCTCGACATGGCTATGCTTGTTGAGACGCAGGAAGAAAAAATGAATGACATTGAGGAGAATGTAGCCAATGCAAGTTGCTCCATCAATGGCGGAACTAACAGTCTCTACTATGCCAATCAGACTAAGAAAAACAAGAAATGGGCGTATTGGGTCGCAGCTGTTGTACTGATCATAGTGCTGGTTTGCTTCATTGCTACACTAGTTTCTTGA 861 42.04 MTKSLLSYVELKKQAMKDMEADSDIETGQLNPAAEHYLSKFFEEAGQVKTEMEEITNLLIELQTLNEEAKSIFSAKILGGLRDRMDSNMVSILRKAKRVKSRLEALDRSNVKNGRNSEAFKESSHVDRIRISVTNGLRVKLRELMNDFQFLREKILRDHKEDLRRTYYTATGEQLSEEVIEKIVMGGERIDLFQGNKAKHQAVLEVQRSLNKLHQVFLDMAMLVETQEEKMNDIEENVANASCSINGGTNSLYYANQTKKNKKWAYWVAAVVLIIVLVCFIATLVS 286
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 10701857 10702717 + BLOR13824 Blo04g00912 59940
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00912 286 CDD SynN 38 190 IPR006011 GO:0016020
Blo04g00912 286 PANTHER SYNTAXIN-112 7 282 - -
Blo04g00912 286 PANTHER SYNTAXIN 7 282 IPR045242 -
Blo04g00912 286 Pfam Syntaxin 40 227 IPR006011 GO:0016020
Blo04g00912 286 Gene3D - 34 163 - -
Blo04g00912 286 CDD SNARE_syntaxin1-like 197 252 - -
Blo04g00912 286 Gene3D - 190 286 - -
Blo04g00912 286 SUPERFAMILY t-snare proteins 36 248 IPR010989 GO:0016020|GO:0016192
Blo04g00912 286 Coils Coil 224 244 - -
Blo04g00912 286 SMART SynN_4 33 160 IPR006011 GO:0016020
Blo04g00912 286 SMART tSNARE_6 188 255 IPR000727 -
Blo04g00912 286 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 193 255 IPR000727 -
Blo04g00912 286 Coils Coil 48 72 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Blo04g00912 Blo16g00051 BCT
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00912 Blo-Chr4:10701857 Blo08g00183 Blo-Chr8:2085505 3.16E-51 dispersed
Blo01g00722 Blo-Chr1:9192879 Blo04g00912 Blo-Chr4:10701857 1.12E-116 transposed
Blo15g00703 Blo-Chr15:22339372 Blo04g00912 Blo-Chr4:10701857 4.69E-113 transposed
Blo16g00051 Blo-Chr16:1903083 Blo04g00912 Blo-Chr4:10701857 5.74E-132 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00912 K08486 - jre:108997509 369.392