Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00915 ATGGGAACTAATGGGATTGAAGCCCATGAACCGATGCCAAATCCTTACCCCTTCAAGGTTCATCATTTAATGTGCATTAAACTATTGGCATTGGTCGATAGAGTCTCAGCAGTTCTTCCAAAAATAGAAGAAGTGAGGCCTAAATGCCAAACAGGATTTCAGTCCCTCTGTTCATTGAATGGTGCAATGGAGAATGCAAAGATGCTACTTCAGTACTGTTGCGAGTCTAGTAAACTTTATTTGGCAGCAACAGGGGATGCAGTAGTCAGAAAATTTCGGAGATCAAGTGACTCTTTGGAGCAAAGTTTACGTGAACTTAAAGATATGTTACCTGTGTTGTTGGAATTAGAGGTCGCTCACATAGCAAATGATCTAAGGAATACAACATATATCCTGGACTCATCTGAAGAAGAAGCTGGGAAGGCTGTGAATCGGTTGCTTAGAAAAATTGATTCCACATCGGATTTTGAGGAGGAAGCTTTTCGAACTGCAGCTTTGAAGCTCAACATTACTTCACAAAGGGAAATCAATATTGAAAAGATGTCTATTGAGAAACAACATGGAAATATGGATGCCACTGATCGAAAGAGAAGAAATATATTGATGTGCCTTTATAATCTTCTGTTGAAATATGGAGACTTATTTGTTGGAGAGGATGCAGAGAGTGTCAGTGCAGTGATTGTTAACTCAGTTTCAGTTGAGAATGCTGCTCCTGAAGAATATAAATGCCCTCTATCGTTAAGAATAATGTACGATCCTGTAATTATTGCATCTGGACAGACATATGAGAGGTTTTGGATTCAGAAGTGGTTAAAAGAGGGTCATGATACATGCCCAAAAACTGGAATGAAGTTGTCCAGTCAATCAATGATCCAAAACGAGTCCTTGAAGGATTTAATATCAAAATGGTGCATTAAGAGTGAAGTTGCCATTTCAGATCCAAGAACACAACCAGAAACTCATTCGTGGGAATATTCATCAATCTCTAGCTTTGGAAGTTCAATGAATGGTTTTCATCTGCATATGAATTTTAGCGATACACCGCTCCAATCACTGGATGCAATTTATAATGCATATTCATTACCCACTAGGCCTGCAAGTGGACCAAGTCTGACGTCAATGCAGACTAAGGATGATTGTTCTACACCCGCATCTGATGGCAATCTACGTGAAAAGGATTTAGAGTTTCCAGATAACCTTAGTGAGCTTGAATGGGAGATGCAATGCAAGGCCATTAGTGATTTGAAGAATAACTTGAAGGAGAATGATAAAGTTTGTCCGAGGTTGTCAGAGACTGCCATTGAACATCTCGTAAGATTTTTGAGGGATGCGCATGATAAGCAGGACTCGAGAGCTGCGAAAGATGGAGCTGAGTTATTTCTGGCATTGTTGAGCAAAAGCAGACAAGGTGTATTGAAAATACGTGAAGAAACACTGAGTTTGTTTTCCAGTTTGCTCCATTCAGCAGCGACAAAAGAAGTTCTTTCTATTTTGGGAGTGCTGTCTCGCCAGCAACAGTATATTTCCAAGTTTGCTGCACCTGGAGTTCTTGCTTCTATTCTAGAACTCATTGACTCCCCGATCAGCGATTTGAAGAAAAAAGCTCTTGAAATTCTATCCAGTCTATCCTCAAGTTATGACATTTGCTCCCACATTGTTTCTACAGGTTGCGTACCAAAATTGGTTCATTTGTTCTATGATGATGATCTTTCAGGAAACTGTATTCTTCTAGTAGAAAATTTATGCAACATTGAGGAGGCTAGGATTTCTGTAGTCGAAACAGAAGGATGTCTTGCTTCTGTCTCTCAACTTCTCGAGTCTGGCAGTCGGGAGAAGCAAGAACATGCAGTTATGACCCTCCTTTCCTTATGTTCCCAAAGAGTTCAATACTGTGAATTGGTAATGGAAAATGGTATTATTCCTTCCCTTGTACACATATCCCTCAATGGGAGTAAGAAAGGCAGGTCGGGTGCTTTGGAGTTGCTTCGGCTTCTTAGAGATGTGTGTGATGATCAAGAATCTCAGAAGCCTCAATACGATGCCTCCACGTATTGCAGTAACCGCCATGTTGCAGATGAAAAAAAAGCGTCATCCAAGCCATTTGGATTCTTTGGAAGTAAAATAGCATTCTTCTCAAAAGATAGGTCTTGA 2151 40.21 MGTNGIEAHEPMPNPYPFKVHHLMCIKLLALVDRVSAVLPKIEEVRPKCQTGFQSLCSLNGAMENAKMLLQYCCESSKLYLAATGDAVVRKFRRSSDSLEQSLRELKDMLPVLLELEVAHIANDLRNTTYILDSSEEEAGKAVNRLLRKIDSTSDFEEEAFRTAALKLNITSQREINIEKMSIEKQHGNMDATDRKRRNILMCLYNLLLKYGDLFVGEDAESVSAVIVNSVSVENAAPEEYKCPLSLRIMYDPVIIASGQTYERFWIQKWLKEGHDTCPKTGMKLSSQSMIQNESLKDLISKWCIKSEVAISDPRTQPETHSWEYSSISSFGSSMNGFHLHMNFSDTPLQSLDAIYNAYSLPTRPASGPSLTSMQTKDDCSTPASDGNLREKDLEFPDNLSELEWEMQCKAISDLKNNLKENDKVCPRLSETAIEHLVRFLRDAHDKQDSRAAKDGAELFLALLSKSRQGVLKIREETLSLFSSLLHSAATKEVLSILGVLSRQQQYISKFAAPGVLASILELIDSPISDLKKKALEILSSLSSSYDICSHIVSTGCVPKLVHLFYDDDLSGNCILLVENLCNIEEARISVVETEGCLASVSQLLESGSREKQEHAVMTLLSLCSQRVQYCELVMENGIIPSLVHISLNGSKKGRSGALELLRLLRDVCDDQESQKPQYDASTYCSNRHVADEKKASSKPFGFFGSKIAFFSKDRS 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10711448 10715422 - BLOR13827 Blo04g00915 59943

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00915 716 Coils Coil 89 109 - -
Blo04g00915 716 CDD RING-Ubox_PUB 241 282 IPR045210 -
Blo04g00915 716 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 228 317 IPR013083 -
Blo04g00915 716 ProSiteProfiles U-box domain profile. 236 310 IPR003613 GO:0004842|GO:0016567
Blo04g00915 716 SMART Ubox_2 240 303 IPR003613 GO:0004842|GO:0016567
Blo04g00915 716 PANTHER U BOX DOMAIN-CONTAINING 25 679 - -
Blo04g00915 716 SMART arm_5 627 667 IPR000225 GO:0005515
Blo04g00915 716 SMART arm_5 443 487 IPR000225 GO:0005515
Blo04g00915 716 SMART arm_5 545 583 IPR000225 GO:0005515
Blo04g00915 716 SMART arm_5 504 544 IPR000225 GO:0005515
Blo04g00915 716 SMART arm_5 585 625 IPR000225 GO:0005515
Blo04g00915 716 Gene3D - 570 682 IPR011989 -
Blo04g00915 716 SUPERFAMILY ARM repeat 473 672 IPR016024 -
Blo04g00915 716 SUPERFAMILY RING/U-box 236 312 - -
Blo04g00915 716 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 5 25 679 - -
Blo04g00915 716 MobiDBLite consensus disorder prediction 366 383 - -
Blo04g00915 716 Gene3D - 398 569 IPR011989 -
Blo04g00915 716 Pfam U-box domain 237 305 IPR003613 GO:0004842|GO:0016567
Blo04g00915 716 MobiDBLite consensus disorder prediction 366 391 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00915 - - - qsu:111998800 628.246
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00915 Blo16g00047 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00915 Blo-Chr4:10711448 Blo06g00829 Blo-Chr6:31531339 1.17E-73 dispersed
Blo01g01566 Blo-Chr1:55421353 Blo04g00915 Blo-Chr4:10711448 4.14E-71 wgd
Blo16g00047 Blo-Chr16:1887921 Blo04g00915 Blo-Chr4:10711448 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g984 Blo04g00915 Blo16g00047 . . . Bpe13g00442 . . . Cmo16g00674 . . . . . . . . . . . . . . . . . . . . . Cone8ag0814 Cone12ag0712 Cone6ag1628 Cone9ag1553 . . Chy07g01240 . . . Bda11g01864 . . . . Bma06g00119 . . . Cma16g00618 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003260 2 8 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 0 1 1 1 1 1 5 2 1 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00915 Blo_Chr04 FPKM 39.456676 45.485142 10.726491 12.445842 13.537777 17.427336 12.194992 0.022292 0.014132 0.015485