Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00916 ATGGAGATAGGTTATAATTTACAAAATAGGGAGTCTTCGTCCAAGCTGACTTCTACACCCTTCGCTCAAACAGTTGAAGAAAAAACAAGCGATGAAACAATTGAACATGGAGAAACAGCTTCCAATCCTCCTCAAACCCTAGACCAGAATTACCTCACTTATCATCTTCATCACCACCATCATTTTCCTCACAGTCCACAATTGAATCCTCCTCCAGAGATTTCCGGCAACTACAGCAGAGATCCACACCCCAACCGGCCAGATCTGGGGCCAGCTCCAACTACTCCACCGGCCGGAAGATTGAACTCGGGAACCCCATCGCAACCTGGAGCTTCGACTAGTGTAACTATTTCCTCTCCAGTTCGATATCGAGAATGTTTAAAGAACCATGCGGCGAGTATAGGCGGATACGTTCTCGATGGGTGTGGAGAATTCATGCCGAACGGAGAAAGTATAGAAGGTTTGAAATGTGCAGCCTGCGATTGCCATCGTAACTTTCACCGGAAAGAGACCGACGGCGAGCCTCCAGTTCCGTCTTCGGCGAACTGTTACTACCCCTACAGCTCGAACAACACCACCACACGAAGAAGCGATCTAAGAATGGTTCCTCCACCTTCCCATCTCCACCATCAGGGACCACTCTCTCTCGGGCCACCGGCGCCGATGATGATGGCCTTTGGAAGTTCCGGTGGAGCTGCACCGGAGTCTTCCAGCGAAGAACTATCTATACCACAATCATCAAAAAAGCGGTTTCGGACAAAATTTACAAATGAACAGAAAGATAAGATGATGGAGTTCGCTGAAAAACTGGGATGGAAGATTCAGAAGCATGATGACGAAGAGGTGGAGCAATTCTGTACTGAAGCGGGCGTAAAGAGGCAGGTTTTGAAGGTATGGATGCATAACAATAAGCCAGCCATAAAAAAACATCAAATGTAA 939 47.5 MEIGYNLQNRESSSKLTSTPFAQTVEEKTSDETIEHGETASNPPQTLDQNYLTYHLHHHHHFPHSPQLNPPPEISGNYSRDPHPNRPDLGPAPTTPPAGRLNSGTPSQPGASTSVTISSPVRYRECLKNHAASIGGYVLDGCGEFMPNGESIEGLKCAACDCHRNFHRKETDGEPPVPSSANCYYPYSSNNTTTRRSDLRMVPPPSHLHHQGPLSLGPPAPMMMAFGSSGGAAPESSSEELSIPQSSKKRFRTKFTNEQKDKMMEFAEKLGWKIQKHDDEEVEQFCTEAGVKRQVLKVWMHNNKPAIKKHQM 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10741087 10742025 - BLOR13828 Blo04g00916 59944

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00916 312 SUPERFAMILY Homeodomain-like 236 310 IPR009057 -
Blo04g00916 312 MobiDBLite consensus disorder prediction 36 52 - -
Blo04g00916 312 MobiDBLite consensus disorder prediction 1 116 - -
Blo04g00916 312 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 248 304 IPR006455 -
Blo04g00916 312 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 123 170 IPR006456 -
Blo04g00916 312 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 55 310 - -
Blo04g00916 312 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 55 310 - -
Blo04g00916 312 MobiDBLite consensus disorder prediction 98 116 - -
Blo04g00916 312 MobiDBLite consensus disorder prediction 194 249 - -
Blo04g00916 312 Pfam ZF-HD protein dimerisation region 121 171 IPR006456 -
Blo04g00916 312 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 122 170 IPR006456 -
Blo04g00916 312 MobiDBLite consensus disorder prediction 1 27 - -
Blo04g00916 312 Gene3D - 233 308 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00916 - - - qsu:111998832 283.108
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00916 Blo16g00046 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00916 Blo-Chr4:10741087 Blo17g00796 Blo-Chr17:25617141 1.11E-61 dispersed
Blo12g00721 Blo-Chr12:25540007 Blo04g00916 Blo-Chr4:10741087 4.61E-34 dispersed
Blo17g00244 Blo-Chr17:2439156 Blo04g00916 Blo-Chr4:10741087 1.18E-40 dispersed
Blo16g00046 Blo-Chr16:1874806 Blo04g00916 Blo-Chr4:10741087 2.34E-170 wgd
Blo18g00811 Blo-Chr18:23935729 Blo04g00916 Blo-Chr4:10741087 1.89E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g980 Blo04g00916 Blo16g00046 . . Bpe15g00427 Bpe13g00443 . . Cmo04g00894 . Cma03g00745 Cma07g00485 Car03g00680 Car07g00426 Sed14g1123 Cpe19g00812 Cpe10g00617 Bhi03g01303 Tan03g1984 Cmetu03g1675 . Hepe04g1519 . . Cla01g01913 Cam01g2000 Cec04g1655 Cco04g1718 Clacu01g2019 Cmu01g1894 Cre04g1570 . . Cone6ag1625 Cone9ag1550 Lsi01g00671 . Chy07g01244 Cme08g00852 . . Bda11g01865 . . . Bma03g00988 Bma06g00120 . Cmo03g00772 Cmo07g00483 . . . . . . . . . . . . . Cla07g00812 Cam07g0875 Cec07g0928 Cco07g0916 Clacu07g0850 Cmu07g0854 Cre07g1212 . Csa06g03243 Chy02g00645 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo05g00749 . 111 289 ZF-HD Transcription Factor Family AT5G65410 51.1 9.3e-40 161.0
Blo18g00811 BCT 92 285 ZF-HD Transcription Factor Family AT4G24660 50.5 4.3e-43 171.8
Blo17g00796 BCT 91 285 ZF-HD Transcription Factor Family AT4G24660 50.3 2.2e-42 169.5
Blo06g00064 . 40 216 ZF-HD Transcription Factor Family AT4G24660 50.8 2.9e-39 159.1
Blo03g00280 . 66 279 ZF-HD Transcription Factor Family AT2G02540 51.4 6.9e-52 201.4
Blo04g00916 BCT 121 309 ZF-HD Transcription Factor Family AT2G02540 50.2 4.8e-37 152.1
Blo04g00916 BCT 112 309 ZF-HD Transcription Factor Family AT1G75240 53.8 3.3e-38 156.0
Blo10g00133 BCT 12 252 ZF-HD Transcription Factor Family AT5G15210 58.8 7.1e-53 204.5
Blo17g00363 . 11 248 ZF-HD Transcription Factor Family AT5G15210 56.3 8.1e-49 191.0
Blo10g00133 BCT 1 261 ZF-HD Transcription Factor Family AT3G28920 57.3 9.9e-59 224.2
Blo17g00363 . 16 279 ZF-HD Transcription Factor Family AT3G28920 56.3 3.0e-55 212.6
Blo11g00585 BCT 9 247 ZF-HD Transcription Factor Family AT3G28920 52.8 5.8e-51 198.4
Blo10g00133 BCT 15 261 ZF-HD Transcription Factor Family AT5G39760 52.3 4.3e-52 202.2
Blo17g00363 . 24 271 ZF-HD Transcription Factor Family AT5G39760 54.6 2.2e-48 189.9
Blo11g00585 BCT 58 247 ZF-HD Transcription Factor Family AT1G69600 52.5 2.1e-48 189.5
Blo03g00280 . 66 279 ZF-HD Transcription Factor Family AT2G02540 51.4 6.9e-52 201.4
Blo04g00916 BCT 121 309 ZF-HD Transcription Factor Family AT2G02540 50.2 4.8e-37 152.1
Blo18g00811 BCT 92 285 ZF-HD Transcription Factor Family AT4G24660 50.5 4.3e-43 171.8
Blo17g00796 BCT 91 285 ZF-HD Transcription Factor Family AT4G24660 50.3 2.2e-42 169.5
Blo06g00064 . 40 216 ZF-HD Transcription Factor Family AT4G24660 50.8 2.9e-39 159.1
Blo10g00133 BCT 15 261 ZF-HD Transcription Factor Family AT5G39760 52.3 4.3e-52 202.2
Blo17g00363 . 24 271 ZF-HD Transcription Factor Family AT5G39760 54.6 2.2e-48 189.9
Blo05g00749 . 111 289 ZF-HD Transcription Factor Family AT5G65410 51.1 9.3e-40 161.0
Blo11g00585 BCT 58 247 ZF-HD Transcription Factor Family AT1G69600 52.5 2.1e-48 189.5
Blo10g00133 BCT 12 252 ZF-HD Transcription Factor Family AT5G15210 58.8 7.1e-53 204.5
Blo17g00363 . 11 248 ZF-HD Transcription Factor Family AT5G15210 56.3 8.1e-49 191.0
Blo04g00916 BCT 112 309 ZF-HD Transcription Factor Family AT1G75240 53.8 3.3e-38 156.0
Blo10g00133 BCT 1 261 ZF-HD Transcription Factor Family AT3G28920 57.3 9.9e-59 224.2
Blo17g00363 . 16 279 ZF-HD Transcription Factor Family AT3G28920 56.3 3.0e-55 212.6
Blo11g00585 BCT 9 247 ZF-HD Transcription Factor Family AT3G28920 52.8 5.8e-51 198.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005348 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12319 PF04770 ZF-HD_dimer 5.00E-28 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00916 Blo_Chr04 FPKM 3.525457 3.403469 0.88452 1.357417 7.285889 6.606336 7.460678 1.622717 1.564907 1.403885