Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00917 ATGGTGAACTTAGTGGAAGCTCAGAAGCCATTGCTACATTGGCTAATGAAGATGGCCGGGGTGAGACCTTACTCTGTCGAGATTCAATCAGGGACGACGATGAACTTCTGGGTTCCCTCTGAGACGTTGAAGAAGGCGAGGAAAAACGAAAACGTCGATACCCTGATAAGGCCAAGCAAACCCGTCGTCGTCCTCATCCATGGCTTCGCAGGCGAAGGCATTGTGACGTGGCAGTTTCAGGTAGGCTCTTTAACCAAGAAGTACTGCGTCATCGTCCCAGACCTGCTCTTTTTCGGCGGCTCGACAACGGACAAGCCGGACAGGTCGCCGGCGTTTCAGGCGGTGTGTTTGGCGGTGGGGTTGAAGAAGCTCGGGGTGGAAAAGTGTACGCTAGTGGGGTTCAGCTACGGGGGAATGGTGGCGTTCAAAATGGCGGAGCTTTACCCAGAGCTGATTGAAGGCATGGTTATTTCTGGGTCGATCCTAGCAATGACGGACTCGATAAGCAAGGAGACGATGGAGCGAATCGGGTTTAGTTCTTCGTCGGAGCTGCTGCTGCCGACGTCGGTGAAGGGGCTCAAAGCGTTGCTCTCCATAGCTGCACATAAAAAGTTATGGTTTCCCGATCGTCTTCATAAAGATTTTCTCGAGGTCATGTTCAGTAACAGAAAGGAGAGAGGTGAGCTTCTTGATGGCTTGATCATCAGTAACAAGGACTCCACTATACCCAAGGTTCATCTGCTGTGGGGTGAGGAAGATCAGATTTTCCAGGTGGAGCTAGCCAAGAAAATGAAAGAGGAGCTTGGGAGTAAAGCAACATTCCAAGGCATAAAAAAGGGGGGCCATTTAGTTCACCTGGAGCGGCCCTGCGTCTACAACAGGTGCCTCAAGCGATTCCTCCAGCAAAACGGTGTTGTATCAAACTAA 927 51.13 MVNLVEAQKPLLHWLMKMAGVRPYSVEIQSGTTMNFWVPSETLKKARKNENVDTLIRPSKPVVVLIHGFAGEGIVTWQFQVGSLTKKYCVIVPDLLFFGGSTTDKPDRSPAFQAVCLAVGLKKLGVEKCTLVGFSYGGMVAFKMAELYPELIEGMVISGSILAMTDSISKETMERIGFSSSSELLLPTSVKGLKALLSIAAHKKLWFPDRLHKDFLEVMFSNRKERGELLDGLIISNKDSTIPKVHLLWGEEDQIFQVELAKKMKEELGSKATFQGIKKGGHLVHLERPCVYNRCLKRFLQQNGVVSN 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10752374 10753557 - BLOR13829 Blo04g00917 59945

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00917 308 Pfam alpha/beta hydrolase fold 61 169 IPR000073 -
Blo04g00917 308 PRINTS Alpha/beta hydrolase fold signature 245 259 IPR000073 -
Blo04g00917 308 PRINTS Alpha/beta hydrolase fold signature 87 102 IPR000073 -
Blo04g00917 308 PRINTS Alpha/beta hydrolase fold signature 131 144 IPR000073 -
Blo04g00917 308 PRINTS Alpha/beta hydrolase fold signature 145 158 IPR000073 -
Blo04g00917 308 Gene3D alpha/beta hydrolase 51 303 IPR029058 -
Blo04g00917 308 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 2 303 - -
Blo04g00917 308 SUPERFAMILY alpha/beta-Hydrolases 55 300 IPR029058 -
Blo04g00917 308 PANTHER SI:DKEY-122A22.2 2 303 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00917 - - - tcc:18610921 476.863
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00917 Blo-Chr4:10752374 Blo18g00258 Blo-Chr18:2737077 2.40E-48 dispersed
Blo04g00917 Blo-Chr4:10752374 Blo18g00257 Blo-Chr18:2732489 4.19E-48 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g977 Blo04g00917 . . . Bpe15g00428 . . . Cmo04g00877 Cmo16g00763 . . . . . . . . . . . . . . . . . . . . . Cone8ag0812 . . . . . Chy07g01245 . . . . . . . Bma03g00989 . Sed05g3619 . . Cma16g00706 . . . . Cpe14g00603 Bhi10g02010 Tan05g1308 Cmetu07g0234 . Hepe08g1015 . . . . . . . . . Lsi07g00150 Csa04g00453 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002258 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 1 2 2 3 2 2 2 5 2 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00917 Blo_Chr04 FPKM 17.986162 0.0 0.0 11.610632 19.758928 13.535323 18.922207 20.496235 24.105581 24.111368