Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00920 ATGAATGCTCCTTTGGCCATTCCAATGTTTTCTTTCTTGGCTTCTGACTTTCATTTGGATTTATGCAAGCAAGAAAATGGGGTCCAAGAGGATGGTGAGACACTTCAGGATGCCAAAAAGGGGGACAGCATTCTTATATCAAGAGAAATGGAAGAGGAGGAAGAAAACTTGTTAAAAGCTCGAATAGAGGAAGAAGAGGTAGAGCTGGGAAAGAAGTATGTCACATCACCACATCTGAACGAACGTCAATTTACAAAACTGGATGAGCTCTTGACTCAAACACAGTTATATTCAGAGTTTCTGCTGGAGAAAATGGACGACATTGCATTTAATGGAGTGGAAAAGGAAAGCGAAACTGTTGAGAAGAAAAAGGGTCGTGGCTCTAAAAGAAAAGCCACTACAAACTACAATAATAGGAAAGCGAAGAGGGCAGTTGCAGCCATGCTCACTAAATCTCAAGAAGGTGAGAAGGATGAAGATATAAGTCTTAGTGTAGAAGAACGAGTTGAAAAGGAGAAAAGAGAGCTGGTCCCACTACTGACTGGTGGACACTTGAAGTCCTATCAACTCAAAGGCGTGAAATGGCTGATCTCATTATGGCAAAATGGATTGAAAGGGATTCTCGCTGATCAAATGGGACTGGGAAAGACAATTCAGACCATTGGTTTCCTTGCACATTTGAAAGGGAAAGGATTGGATGGACCCTACTTAGTGATTTCTCCTCTTTCTACCCTCTCAAATTGGGTTAATGAGATTTCTAGGTTTTCGCCTTCTATAAATGCTATTATCTATCATGGTAACAAGAAAGAAAGGGAGGAGATACAGAGAAAGTACATGCCAAGAACAATTGGCTCGAAATTCCCCATAGTAGTAACTTCTTATGAGGTTGCGCTGGGCGAGGCAAGAGGACATAGGCTAAAAAACTCAAAATGCATATTGTTGAAACAGTTGAAATACTTATCTGTTGAGAATAAGCTATTATTAACTGGGACACCACTGCAAAATAATCTGGCAGAGCTTTGGTCATTGTTGAACTTTATTTTGCCAGACGTTTTCTCATCCCACGAAGAATTTGAGTTTGATCTCTCTGGAAAGTGCAACGGTGAAGACAGAGAAGAGTTGGTAGAAAAGCAAAAGGGTCAGGTAGTCGTTGCAAAGTTACATTCAATATTGCGTCCATTTTTACTCCGAAGATTAAAATCTGATGTGGAGAACATGCTTCCTGGGAAAAAAGAGATCATAATTTACGCCAACTTAACAGAATATCAGAAGAATTTTCAAGATCATTTAATGAATGAGAGTTTGGAAGAATATCTCACTGAGAAGTCATTTTCTGGACATAGCGCGATAAAAAAGCTGAACAATTTAGTTATTCAGCTTCGGAAGAATTGCAACCATCCTGACCTTTTAGAATCTGCTTTTGACAATTCATACAGACATCCACCAGTAGAGCAGATAGTTGAACAATGTGGTAAATTTCACTTGCTGGACAGATTGTTGGCGCGTCTATTTGCTCGCAAGCATAAAGTCCTTATCTTCAGCCAATGGACTAAGATTTTGGACATCATGGATTACTATTTTAGTGAAAAAGGATTTGAAGTTTGTGGAATAGATGGCAATGTCAAGCTAGATGAAAGGAGGAGACAAATTCAGGAGTTCAATGATGTCAACAGCAATTATAGAAATTTTCTTCTAAGTACTCGAGCCGGGGGACTGGGTATTAATCTTACAGCTGCAGATATACTTGTATTCTTGCAGAATCCTCAAATGGATTTGCAGGCCATGGATAGGTGTCACAGGGTGGGTCAAACCAAGCCTGTTCATGTTTATAGGCTTGCAACTGCTCAATCAATAGAGGTTTCCATTCTATGCAGCCGCGTGCTAAAACGGGCGTTTAGTAAATTCAAGCTTGAGCACGTGGTAATCGGGAAAGGACAGTTTCATCAAGAACGAACCAAGGCCAGCTCATATGATGACACTGAGGGAGAAGGTCTGCTGGCGCTGCTCAAGGAGGAAGAAAATGATGAAGACAAGATGATACAGACAGATATCAGGGATGATGATTTGGAAAGAATTTTGGATCGGTCAGATCTGGTGGGTGCTTCGCCTGTGAGAATGATGTGGAAGCAAAGAGCAGTGCTTCTATACCTCTTAAAGCCTAAAGGGCCTGGTTGGGAAGCTGTGATACCGACGGCTACTGGTGGGGGAGTGCTGTCTACACTGAACAGCTGA 2232 41.17 MNAPLAIPMFSFLASDFHLDLCKQENGVQEDGETLQDAKKGDSILISREMEEEEENLLKARIEEEEVELGKKYVTSPHLNERQFTKLDELLTQTQLYSEFLLEKMDDIAFNGVEKESETVEKKKGRGSKRKATTNYNNRKAKRAVAAMLTKSQEGEKDEDISLSVEERVEKEKRELVPLLTGGHLKSYQLKGVKWLISLWQNGLKGILADQMGLGKTIQTIGFLAHLKGKGLDGPYLVISPLSTLSNWVNEISRFSPSINAIIYHGNKKEREEIQRKYMPRTIGSKFPIVVTSYEVALGEARGHRLKNSKCILLKQLKYLSVENKLLLTGTPLQNNLAELWSLLNFILPDVFSSHEEFEFDLSGKCNGEDREELVEKQKGQVVVAKLHSILRPFLLRRLKSDVENMLPGKKEIIIYANLTEYQKNFQDHLMNESLEEYLTEKSFSGHSAIKKLNNLVIQLRKNCNHPDLLESAFDNSYRHPPVEQIVEQCGKFHLLDRLLARLFARKHKVLIFSQWTKILDIMDYYFSEKGFEVCGIDGNVKLDERRRQIQEFNDVNSNYRNFLLSTRAGGLGINLTAADILVFLQNPQMDLQAMDRCHRVGQTKPVHVYRLATAQSIEVSILCSRVLKRAFSKFKLEHVVIGKGQFHQERTKASSYDDTEGEGLLALLKEEENDEDKMIQTDIRDDDLERILDRSDLVGASPVRMMWKQRAVLLYLLKPKGPGWEAVIPTATGGGVLSTLNS 743
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10886248 10890911 - BLOR13832 Blo04g00920 59948

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00920 743 Pfam SNF2-related domain 188 469 IPR000330 GO:0005524|GO:0140658
Blo04g00920 743 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 197 350 IPR014001 -
Blo04g00920 743 Coils Coil 48 70 - -
Blo04g00920 743 SMART ultradead3 181 361 IPR014001 -
Blo04g00920 743 Gene3D - 408 624 IPR027417 -
Blo04g00920 743 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 398 IPR027417 -
Blo04g00920 743 PANTHER SNF2/RAD54 HELICASE FAMILY 20 742 - -
Blo04g00920 743 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 400 697 IPR027417 -
Blo04g00920 743 SMART helicmild6 521 602 IPR001650 -
Blo04g00920 743 PANTHER ATP-DEPENDENT DNA HELICASE DDM1-LIKE ISOFORM X1 20 742 - -
Blo04g00920 743 Pfam Helicase conserved C-terminal domain 495 602 IPR001650 -
Blo04g00920 743 CDD SF2_C_SNF 481 612 - -
Blo04g00920 743 Gene3D - 180 407 IPR038718 -
Blo04g00920 743 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 495 643 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00920 K19001 HELLS, DDM1; ATP-dependent DNA helicase - qsu:111991807 1003.05
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00920 Blo05g00528 CCT
Blo04g00920 Blo16g00039 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00920 Blo-Chr4:10886248 Blo08g00123 Blo-Chr8:1294520 1.11E-96 dispersed
Blo16g00039 Blo-Chr16:1771705 Blo04g00920 Blo-Chr4:10886248 0 wgd
Blo04g00920 Blo-Chr4:10886248 Blo05g00528 Blo-Chr5:9820584 3.76E-38 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g955 Blo04g00920 Blo16g00039 . . Bpe15g00433 Bpe13g00452 . . Cmo04g00837 Cmo16g00712 . . . . . . . . . . . . . . . . . . . . . Cone8ag0805 . . . . . Chy07g01291 . . . Bda11g01874 . . . Bma03g00992 Bma06g00128 . . . Cma16g00655 . . . . Cpe14g00559 . . . . . . . Cla07g00866 Cam07g0939 Cec07g1004 Cco07g0982 Clacu07g0912 Cmu07g0912 Cre07g1283 . Csa04g00510 . .
Vvi4g1332 Blo04g00920 . . . . . Bma09g00432 . . . Cma03g01112 . Car03g01005 . . . Cpe10g00321 . . . . . . . Cla01g01488 Cam01g1555 Cec04g1201 Cco04g1269 Clacu01g1581 Cmu01g1470 Cre04g1151 . . . . Lsi01g01173 . . Cme08g01140 Blo05g00528 . . Bda14g01013 . . . . . Cmo03g01102 . . . . . . . . . . . . . . . . . . . . . . Csa06g02737 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009588 2 0 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 0 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12321 PF00176 SNF2_N 3.60E-48 CL0023 Blo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00920 Blo_Chr04 FPKM 9.216591 10.346897 4.783045 9.556754 0.423575 0.554005 0.335216 23.068214 23.523132 19.54562