Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00921 ATGAAGTGCCCCCACTGCTCGGCGGCTCAGGGACGGTGTGTCACCTCCAGCTCCGGCAGGTCCATTACTGAGTGCGCTTCTTGCGGCCGCGTGGTAGAAGAGCGACAATTCCAACCGCATCACCTCTTCCACCTCCGAGCTCAAGACAACCCTCTCTGTTTGGTCACTTCCGACCTTCCTACTCCTCCATCGCATCTCCAATTGGACAACGAGGAAGATCCTTTTGACCCGACTGGTTTCATTACCGCCTTTTCCACCTGGTCTCTCGAGCACAACCCCCTTTTCCTTCGCTCCTCCCTCTCCTTCTCCGGTCACCTTGCAGAGCTCGAGCGCGTCCTCGAATCTACTACCGCTACTTCTACTTCTACGGTTGTTGTCGATAATCTGCGGGCGTATATGCAAATCATTGATGTGGCTTCGATCTTGGGTTTGGATTATGATATTTCGGACCACGCTTTTCAGTTGTTTAGGGACTGTAGCTCGGCTACTTGCTTGAGGAATCGTAGCGTTGAGGCGCTTGCCACTGCTGCGCTTGTACAGGCCATTAGGGAGGCACAGGAGCCAAGGACCCTCCAGGAAATTTCAATTGCAGCCAATGTACCCCAGAAGGAGATTGGGAAGTACATCAAGATACTTGGAGAAGCTCTACAACTAAGTCAGCCCATTAACAGCAATTCCATATCGGTTCATATGCCAAGATTTTGCACGCTGCTTCAACTTAATAAATCTGCTCAGGAACTTGCAACTCACATTGGGGAGGTTGTCATCAACAAATGCTTCTGCACTCGTAGAAACCCAATTAGTATCTCTGCGGCTGCAATATATTTAGCCTGTCAACTGGAAGACAAACGAAAGACTCAGGCAGAGATTTGCAAGGTTACTGGCCTCACTGAAGTCACACTACGCAAAGTCTACAAGGAGCTGTTGGAAAATTGGGATGACTTAATTCCATCTAATTACACTCCAGCTGTTCCTCCCGAAAGAGCATTTCCCACTACTGTAATTGCATCTGGTCGATCTTCGGCTTCTAAAATCGATTTGGTTGATGCAGTAATTTCGGAGCGAGACAAACAAGCAGAGGTCAAACCCAACAAACAAAGTGAACTCTGTGATCCGAGTAATCTAGCCGGAGGTAGATATGAAAGTGAAAGTAAAGTTAATTCTCAATTGCTACATACAATTTCTTTGACGAATAGGCCACAGACTTTTTGGCAAACCCATTTTCCTCCTTCGACTTCTGGCATTGGAAGGACTGTGTGGGGGAAAAATCAGAGTAGTATTCAGGGAATGGAAATTGATGATGTCCATTGTGTTAAGAATTCTCTGAAGCCACTAGAATTGGCCAGTCAGAGCTCAGCAAACAGGCCTTCCCTGCCACCGCATCAATCAGAGCCTTCTTCAAACTTCAGAATTGAGGTTCCACAGAAAGTAGTGCAAGAATGTGCAGAATATAGAAGACCTGAGAGCCAGAATGGAAGCTGA 1482 47.44 MKCPHCSAAQGRCVTSSSGRSITECASCGRVVEERQFQPHHLFHLRAQDNPLCLVTSDLPTPPSHLQLDNEEDPFDPTGFITAFSTWSLEHNPLFLRSSLSFSGHLAELERVLESTTATSTSTVVVDNLRAYMQIIDVASILGLDYDISDHAFQLFRDCSSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLIPSNYTPAVPPERAFPTTVIASGRSSASKIDLVDAVISERDKQAEVKPNKQSELCDPSNLAGGRYESESKVNSQLLHTISLTNRPQTFWQTHFPPSTSGIGRTVWGKNQSSIQGMEIDDVHCVKNSLKPLELASQSSANRPSLPPHQSEPSSNFRIEVPQKVVQECAEYRRPESQNGS 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10914660 10916979 - BLOR13833 Blo04g00921 59949

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00921 493 SUPERFAMILY Cyclin-like 227 325 IPR036915 -
Blo04g00921 493 Gene3D - 129 220 - -
Blo04g00921 493 SMART cyclin_7 229 310 IPR013763 -
Blo04g00921 493 SMART cyclin_7 133 214 IPR013763 -
Blo04g00921 493 CDD CYCLIN 231 309 IPR013763 -
Blo04g00921 493 Gene3D - 229 325 - -
Blo04g00921 493 CDD CYCLIN 131 212 IPR013763 -
Blo04g00921 493 PRINTS Transcription initiation factor IIB signature 175 194 IPR000812 GO:0006352|GO:0070897
Blo04g00921 493 PRINTS Transcription initiation factor IIB signature 230 248 IPR000812 GO:0006352|GO:0070897
Blo04g00921 493 PRINTS Transcription initiation factor IIB signature 201 216 IPR000812 GO:0006352|GO:0070897
Blo04g00921 493 PRINTS Transcription initiation factor IIB signature 264 280 IPR000812 GO:0006352|GO:0070897
Blo04g00921 493 PRINTS Transcription initiation factor IIB signature 18 38 IPR000812 GO:0006352|GO:0070897
Blo04g00921 493 PRINTS Transcription initiation factor IIB signature 296 310 IPR000812 GO:0006352|GO:0070897
Blo04g00921 493 PANTHER PLANT-SPECIFIC TFIIB-RELATED PROTEIN 1 1 429 - -
Blo04g00921 493 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 1 429 IPR000812 GO:0006352|GO:0070897
Blo04g00921 493 MobiDBLite consensus disorder prediction 449 471 - -
Blo04g00921 493 Pfam Transcription factor TFIIB repeat 131 212 IPR013150 GO:0017025
Blo04g00921 493 Pfam Transcription factor TFIIB repeat 229 310 IPR013150 GO:0017025
Blo04g00921 493 SUPERFAMILY Cyclin-like 130 220 IPR036915 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00921 K03124 TFIIB, GTF2B, SUA7, tfb; transcription initiation factor TFIIB - zju:107424838 687.952
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00921 Blo-Chr4:10914660 Blo11g00156 Blo-Chr11:1230778 4.53E-20 dispersed
Blo04g00921 Blo-Chr4:10914660 Blo01g00966 Blo-Chr1:25532831 7.33E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g949 Blo04g00921 . . . Bpe15g00434 . . . . . Cma03g00760 . Car03g00694 . Sed14g1109 . Cpe10g00603 Bhi03g01283 Tan03g1969 Cmetu08g1776 . Hepe04g1500 . . Cla01g01897 Cam01g1987 Cec04g1638 Cco04g1704 Clacu01g2006 Cmu01g1877 Cre04g1558 . . . . Lsi01g00685 . . Cme08g00838 . . . . . . . . . Cmo03g00787 . . . . . . . . . . . . . . . . . . . . . . Csa06g03230 Chy02g00658 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012274 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29