Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00925 ATGCTATCTAGCATCACGTCAAGGCTGAATTCTACTGTCTGTTCCAGTATTCAGAAATCAAGTCCACAGAATTTAACTAATTTGCTAGCTGGTCAGGGAAAGTCACTAACTCATAAACAACGGATTTCTTGCTATATACCATATTCGTTCATCCTGTTTACCAATACATATCCTTATCCTACACAATACCTGTTCAAGCAAAATTCAATGGCTACCGCTACTTCTAAAGCTGTCTTAGGTGATGTTCACGTTGATGACTTAATCACGGGGTGTGGAAATGCTGTTGATCTAGCAAAACCTTTCAGTGTTTTTTTTCATGATAGGAGTCAGAGTAGTTTCCATAAAGCAAGGGTGAGTTTGAAGTGGAAAACACTATCCAGGACCGGCCTAGCAAGTGGTATTTCATTTCTGGCTGCAACAAGGGGAAATCACAACTTGAACTTGCTTGGTGGAGTGAATAATGCTTCTTACGCATGCTATTCTACCGGGCCTGCTAGTGATGTTTCACTGGATGAAAATTCCGAAGAACAGCTTGCAAGTGCTACCATTTTGTCCAGCCAGGCTATTTTGGGTGAGAGAACCTTGAAGCTGCTCTCTGGATCATGCTACTTGCCACATCCAGACAAGGAAGCGACAGGGGGAGAGGATGCTCATTTTATTTGCACGGAGAAACAAGCAATCGGTGTAGCTGATGGAGTGGGCGGTTGGGCTGATGTTGGTGTCAATGCAGGGCTGTTTGCCCGTGAACTCATGTCTTTTTCCATTGGAGAAATCAAAAAGGAGTCCATGGGTTGCATTGACCCTGCCAAGGTCTTAGAAAAAGCTCATTCAAACACGAAAGCAAAAGGTTCTTCAACTGCGTGCATCATTGCCCTTTCAGAGAAGGGGCTACATGCTATCAATCTTGGGGACAGTGGATTCATAGTCATTAGAGATGGAAATACAATATTCAGATCTCCTGTTCAGCAACATGGGTTCAATTTTACATATCAGTTGGAAAGTGGTAATACTGGTGATCTACCCAGCTCTGGACAGGTTTTCATGATTCCTGTTATTCCGGGTGATGTAGTTATTGCCGGAACAGATGGGTTATTTGACAACCTGTATAACAAGGAAATCGCCCCAGTTGTAGCAGAGGCACTAAGCTCTGGTCTGGAACCCCAAGCGACGGCTCAGAAGATTGCAGCTTTGGCTCGCAAGAGTGCCATAGATCGAACCCGACAAACACCGTTTTCCACCGCTGCCCAAGAGGCTGGGTTCCGCTATATTGGTGGCAAGTTAGACGACATTACTGTCGTTGTCTCTTATGTCACTAGCTGGGACTGTTAG 1329 44.62 MLSSITSRLNSTVCSSIQKSSPQNLTNLLAGQGKSLTHKQRISCYIPYSFILFTNTYPYPTQYLFKQNSMATATSKAVLGDVHVDDLITGCGNAVDLAKPFSVFFHDRSQSSFHKARVSLKWKTLSRTGLASGISFLAATRGNHNLNLLGGVNNASYACYSTGPASDVSLDENSEEQLASATILSSQAILGERTLKLLSGSCYLPHPDKEATGGEDAHFICTEKQAIGVADGVGGWADVGVNAGLFARELMSFSIGEIKKESMGCIDPAKVLEKAHSNTKAKGSSTACIIALSEKGLHAINLGDSGFIVIRDGNTIFRSPVQQHGFNFTYQLESGNTGDLPSSGQVFMIPVIPGDVVIAGTDGLFDNLYNKEIAPVVAEALSSGLEPQATAQKIAALARKSAIDRTRQTPFSTAAQEAGFRYIGGKLDDITVVVSYVTSWDC 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10965694 10967480 + BLOR13837 Blo04g00925 59953

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00925 442 Pfam Stage II sporulation protein E (SpoIIE) 225 437 IPR001932 -
Blo04g00925 442 PANTHER PROTEIN PHOSPHATASE 50 439 - -
Blo04g00925 442 Gene3D - 209 327 IPR036457 -
Blo04g00925 442 SUPERFAMILY PP2C-like 202 434 IPR036457 -
Blo04g00925 442 SMART PP2C_SIG_2 197 437 IPR001932 -
Blo04g00925 442 SMART PP2C_4 192 435 IPR001932 -
Blo04g00925 442 PANTHER PROTEIN PHOSPHATASE 2C 50 439 IPR039123 -
Blo04g00925 442 Gene3D - 340 439 IPR036457 -
Blo04g00925 442 ProSiteProfiles PPM-type phosphatase domain profile. 198 437 IPR001932 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00925 K17508 PTC7, PPTC7; protein phosphatase PTC7 [EC:3.1.3.16] - zju:107424809 520.776
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00925 Blo-Chr4:10965694 Blo12g00911 Blo-Chr12:27295851 6.66E-122 dispersed
Blo03g01201 Blo-Chr3:38306008 Blo04g00925 Blo-Chr4:10965694 6.96E-41 transposed
Blo01g01554 Blo-Chr1:55297652 Blo04g00925 Blo-Chr4:10965694 5.90E-140 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g935 Blo04g00925 . . . Bpe15g00436 . . . Cmo04g00831 Cmo16g00707 . . . . . . . . . . . . . . . . . . . . . Cone8ag0798 Cone12ag0755 Cone6ag1609 Cone9ag1536 . . Chy07g01279 . . . . . . . . . . . . Cma16g00650 . . . . Cpe14g00554 . . . . . . . Cla07g00856 Cam07g0928 Cec07g0993 . Clacu07g0902 Cmu07g0902 Cre07g1270 Lsi07g00217 Csa04g00521 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001014 3 2 2 2 2 2 4 2 2 3 2 2 4 2 2 4 2 6 3 2 2 2 2 2 2 2 2 9 5 2 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00925 Blo_Chr04 FPKM 12.002408 14.126137 11.367332 11.164131 8.082592 7.926625 6.081036 111.286964 116.409248 113.050453