Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00929 ATGAGTGCAACAGTCAATCTGACGAGCCCACCGTCTCCGGATAACATGTCCGATAGTGGTTCCAAAGAGCAGGACAAGTTTCTTCCCATTGCCAACGTTGGCCGTATCATGAAGAAATCTCTCCCCCCCAACGCTAAAATATCCAAGGAAGCCAAAGAAACCGTCCAGGAATGTGTTTCGGAGTTCATTAGCTTCATCACCGGAGAAGCTTCCGATAGGTGTCGTCGTGAGAAGAGGAAGACGATCAACGGAGATGATCTTTTGTGGGCCATGACCACCCTCGGTTTCGAAAATTACGTCGGACCCTTGAAAGTTTACCTCGGCAAGTTCAGAGAAACTGAAGAAGAAGAAGAAGACTCTCTCCCAAAGCCCTCCTCGGTCCCCACCCAACTCTCGTATCCTTCCGCTTTTACAGCGAACGCTGACCTTCAGAACTCTAATGGTAGAGTCATCAGCTATGGAGACAACCTCAACAATATAGCTTTCAAGGTCAATAATGGAGATGCGAATGGGAGTAGAGCCATGGCGACTCATCTACATCATGGATCAGACTGA 555 48.29 MSATVNLTSPPSPDNMSDSGSKEQDKFLPIANVGRIMKKSLPPNAKISKEAKETVQECVSEFISFITGEASDRCRREKRKTINGDDLLWAMTTLGFENYVGPLKVYLGKFRETEEEEEDSLPKPSSVPTQLSYPSAFTANADLQNSNGRVISYGDNLNNIAFKVNNGDANGSRAMATHLHHGSD 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10990813 10991367 - BLOR13841 Blo04g00929 59957

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00929 184 MobiDBLite consensus disorder prediction 1 25 - -
Blo04g00929 184 ProSitePatterns NF-YB/HAP3 subunit signature. 58 74 IPR003956 GO:0005634|GO:0006355|GO:0043565
Blo04g00929 184 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Blo04g00929 184 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Blo04g00929 184 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Blo04g00929 184 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 11 176 IPR027113 GO:0001228|GO:0006355|GO:0016602
Blo04g00929 184 Gene3D Histone, subunit A 14 131 IPR009072 GO:0046982
Blo04g00929 184 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-11 11 176 - -
Blo04g00929 184 MobiDBLite consensus disorder prediction 1 18 - -
Blo04g00929 184 SUPERFAMILY Histone-fold 24 130 IPR009072 GO:0046982
Blo04g00929 184 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 27 91 IPR003958 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00929 K08065 NFYB, HAP3; nuclear transcription Y subunit beta - csv:101214273 213.001
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00929 Blo-Chr4:10990813 Blo10g00864 Blo-Chr10:27339437 3.58E-55 dispersed
Blo04g00929 Blo-Chr4:10990813 Blo02g00141 Blo-Chr2:1233511 3.61E-58 transposed
Blo04g00929 Blo-Chr4:10990813 Blo15g00440 Blo-Chr15:6493752 4.79E-58 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo11g00227 BCT 532 669 CCAAT-HAP3 Transcription Factor Family AT5G47670 66.3 2.6e-51 199.1
Blo10g00864 . 17 182 CCAAT-HAP3 Transcription Factor Family AT5G47670 51.2 8.6e-39 157.5
Blo02g00141 . 12 116 CCAAT-HAP3 Transcription Factor Family AT5G47670 66.4 2.1e-37 152.9
Blo11g00227 BCT 514 653 CCAAT-HAP3 Transcription Factor Family AT1G21970 57.3 1.6e-45 179.9
Blo13g00735 . 9 136 CCAAT-HAP3 Transcription Factor Family AT1G21970 53.0 8.2e-37 151.0
Blo15g00440 CCT,ECH 1 169 CCAAT-HAP3 Transcription Factor Family AT4G14540 70.0 2.6e-58 221.9
Blo02g00141 . 1 167 CCAAT-HAP3 Transcription Factor Family AT4G14540 75.3 1.4e-56 216.1
Blo10g00864 . 1 157 CCAAT-HAP3 Transcription Factor Family AT4G14540 71.3 1.5e-53 206.1
Blo03g00464 . 1 134 CCAAT-HAP3 Transcription Factor Family AT4G14540 75.4 8.2e-49 190.3
Blo04g00306 . 648 763 CCAAT-HAP3 Transcription Factor Family AT4G14540 73.3 8.0e-44 173.7
Blo13g00735 . 11 126 CCAAT-HAP3 Transcription Factor Family AT4G14540 73.3 8.0e-44 173.7
Blo12g00456 . 22 130 CCAAT-HAP3 Transcription Factor Family AT4G14540 75.2 4.0e-43 171.4
Blo04g00929 . 19 117 CCAAT-HAP3 Transcription Factor Family AT4G14540 81.8 2.6e-42 168.7
Blo11g00227 BCT 544 643 CCAAT-HAP3 Transcription Factor Family AT4G14540 69.0 2.5e-37 152.1
Blo13g00735 . 1 116 CCAAT-HAP3 Transcription Factor Family AT2G38880 82.8 1.4e-50 196.1
Blo04g00306 . 638 753 CCAAT-HAP3 Transcription Factor Family AT2G38880 81.9 1.2e-49 193.0
Blo12g00456 . 1 114 CCAAT-HAP3 Transcription Factor Family AT2G38880 81.6 6.0e-49 190.7
Blo15g00440 CCT,ECH 1 111 CCAAT-HAP3 Transcription Factor Family AT2G38880 73.0 8.4e-43 170.2
Blo10g00864 . 19 112 CCAAT-HAP3 Transcription Factor Family AT2G38880 81.9 3.2e-42 168.3
Blo02g00141 . 21 111 CCAAT-HAP3 Transcription Factor Family AT2G38880 83.5 3.2e-42 168.3
Blo03g00464 . 23 116 CCAAT-HAP3 Transcription Factor Family AT2G38880 80.9 5.4e-42 167.5
Blo04g00929 . 9 112 CCAAT-HAP3 Transcription Factor Family AT2G38880 69.5 6.6e-40 160.6
Blo03g00464 . 21 120 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.0 3.4e-39 158.3
Blo05g00317 . 110 207 CCAAT-HAP3 Transcription Factor Family AT2G47810 77.6 7.7e-39 157.1
Blo10g00864 . 21 116 CCAAT-HAP3 Transcription Factor Family AT2G47810 74.0 2.2e-38 155.6
Blo15g00440 CCT,ECH 21 116 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.9 8.5e-38 153.7
Blo02g00141 . 21 116 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.9 1.1e-37 153.3
Blo12g00456 . 1 156 CCAAT-HAP3 Transcription Factor Family AT2G37060 74.7 3.4e-56 214.9
Blo13g00735 . 1 133 CCAAT-HAP3 Transcription Factor Family AT2G37060 79.7 1.1e-54 209.9
Blo04g00306 . 648 770 CCAAT-HAP3 Transcription Factor Family AT2G37060 83.3 1.4e-54 209.5
Blo15g00440 CCT,ECH 6 134 CCAAT-HAP3 Transcription Factor Family AT2G37060 69.8 1.6e-45 179.5
Blo03g00464 . 1 126 CCAAT-HAP3 Transcription Factor Family AT2G37060 67.7 2.7e-45 178.7
Blo02g00141 . 6 115 CCAAT-HAP3 Transcription Factor Family AT2G37060 79.1 4.5e-45 177.9
Blo10g00864 . 17 144 CCAAT-HAP3 Transcription Factor Family AT2G37060 66.2 2.3e-44 175.6
Blo04g00929 . 22 114 CCAAT-HAP3 Transcription Factor Family AT2G37060 75.3 1.2e-37 153.3
Blo15g00440 CCT,ECH 1 122 CCAAT-HAP3 Transcription Factor Family AT2G13570 70.5 1.5e-45 179.9
Blo02g00141 . 9 122 CCAAT-HAP3 Transcription Factor Family AT2G13570 75.9 1.9e-45 179.5
Blo03g00464 . 7 120 CCAAT-HAP3 Transcription Factor Family AT2G13570 71.1 1.4e-43 173.3
Blo04g00929 . 3 120 CCAAT-HAP3 Transcription Factor Family AT2G13570 72.0 1.4e-43 173.3
Blo10g00864 . 21 117 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 2.0e-42 169.5
Blo12g00456 . 24 119 CCAAT-HAP3 Transcription Factor Family AT2G13570 78.1 1.9e-40 162.9
Blo04g00306 . 663 757 CCAAT-HAP3 Transcription Factor Family AT2G13570 74.7 1.2e-39 160.2
Blo13g00735 . 26 120 CCAAT-HAP3 Transcription Factor Family AT2G13570 74.7 1.2e-39 160.2
Blo05g00317 . 112 210 CCAAT-HAP3 Transcription Factor Family AT2G13570 70.7 1.3e-36 150.2
Blo10g00864 . 1 140 CCAAT-HAP3 Transcription Factor Family AT5G47640 73.8 4.7e-51 198.0
Blo15g00440 CCT,ECH 1 121 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.2 1.0e-50 196.8
Blo02g00141 . 1 121 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.4 2.0e-49 192.6
Blo03g00464 . 1 134 CCAAT-HAP3 Transcription Factor Family AT5G47640 72.6 4.8e-48 188.0
Blo04g00306 . 663 773 CCAAT-HAP3 Transcription Factor Family AT5G47640 74.4 2.7e-43 172.2
Blo13g00735 . 26 136 CCAAT-HAP3 Transcription Factor Family AT5G47640 74.4 2.7e-43 172.2
Blo12g00456 . 19 132 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.7 2.3e-42 169.1
Blo04g00929 . 17 126 CCAAT-HAP3 Transcription Factor Family AT5G47640 73.6 2.6e-41 165.6
Blo12g00456 . 16 156 CCAAT-HAP3 Transcription Factor Family AT3G53340 80.4 6.2e-58 220.7
Blo04g00306 . 638 794 CCAAT-HAP3 Transcription Factor Family AT3G53340 72.0 3.8e-55 211.5
Blo13g00735 . 1 133 CCAAT-HAP3 Transcription Factor Family AT3G53340 78.8 2.4e-54 208.8
Blo15g00440 CCT,ECH 6 138 CCAAT-HAP3 Transcription Factor Family AT3G53340 68.4 4.6e-45 177.9
Blo02g00141 . 6 124 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.1 7.9e-45 177.2
Blo03g00464 . 7 135 CCAAT-HAP3 Transcription Factor Family AT3G53340 65.9 6.7e-44 174.1
Blo10g00864 . 17 115 CCAAT-HAP3 Transcription Factor Family AT3G53340 76.9 3.7e-42 168.3
Blo04g00929 . 22 120 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.7 4.2e-38 154.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010325 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 0 1 0 1 1 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12325 PF00808 CBFD_NFYB_HMF 1.20E-26 CL0012 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00929 Blo_Chr04 FPKM 5.7259 5.264214 1.267732 1.751768 1.986125 1.580036 1.451514 0.0 0.109894 0.0