Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00953 ATGCGATTTGTGTATTTTGGAGGGTGTTTGCATACACAGGAGAAAAGAGGGAGTAAGAAAGGTTCAGGAAGAAGAAGATTGGAGTGTCAACTCTGTGCTTTCGAGTGTTTAGCCGTTTTCTGGGCAGGGGGTTTTGATACAGGGGTCTGTGCCATAGCGCAACGTTTAGGAGATTTTAGGGTTTTGGATTCATTGCTTTTTGAACTGGTTAGATTTTTTCCTTTCTTCAAAAGGCTTTTAATATTTCAGATGCGCTATTTTCATGTTAAAGCTGTACATGTCTTTCGTCAGTATGAGGAAAAAAGGCCCAGGAAAATATTACGCGGAAAGATGAAGAAATCAGATAAATTTATTGCGATGAAAGCTGCAGATCCAAAGGTTTACATGAGGGACATCATCAAGAGCATATACAATGTTCTGAGAAATTCCTCTTGGGATTATGCTCAAGGGCATCTAGAAATGCTTCCTATTAGATGGGATTCTTATACAATCAATCAGGTTTTGAAAACTCATCCGCCAATGGAAAAGGCGTGGCTATTTTTTAATTGGGCCTCATATCGAAAAGGGTTCAAGCACGATCACTTTACATACACCACAATGCTGGATATATTTGGCGAAGCTGGGAGAATTTCATCCATGAACCATTTATTTATACAAATGCAGGAGAAGGAGATTAAAATTGATGCTGTTACTTATACTTCGATGATGCATTGGCTTTCAAGTTCTGGTGATGTTGAGGGGGCTATAAAGCTTTGGGATGAAATGAAAACCAAAGATTGCTCTCCTACTTTGGTTTCTTATACTGCTTTTATGAAGATTCTGTTTGATAATGGCAGAGCTGAGGAAGCCATTGATGTGTACAAGGAGATGCTTCAGTTTGGTCTTTCTCCCAATTGCCATACATACACTGTTTTAATGGAGTTTCTTATGAAGTCTGGAAAATACGAAGAAGCTCTTGAAATTTTATATAAAATGCAAGAAGCTGGAGTACATCCTGATAAAGCTGCTTGCAATATTTTGATTCATAAATGTTCTAAGGCTGGGCAAGCTCATGTAATTACTAAAATCCTTGAGTACATGAAAGAAAATCACCTGGTTCTACGACACCCTGTTTTTCTAGAGGCATTTGAAACTTTGAAATCTTGTAGTCATAGCAGTGCTCTTCTCAGGCAGGTCAATCCTCATATATCGACTGAATCTTTCAGCAAGGAGGTGAAAGTTTCATTAACAACAAATACGTCTGCTACTTTTATATTAGATAGTGGTTTAATGTCTATCCTTTTGAGAAAGGAAAATCTTATTGCTGTTGATCGTCTACTCGCTGGGTTGATAGATGAGGGTGTAAAATTGGACTCCTCACTCATCTTAACTGTAATTGATGTGAATTGCAGTCGTAACAGACCTGATGGTGTTTTATTGGCCTTTGAGTACTGTTTAAAAATGGGTGTGATTCTTCAGAGAAATGGATATCTTAATATAATAGGAATTTTGATCAGATCAAATTTATTTTCAAAGGTGTTGAAGGTAGTTCAGGAAATGATTATGGGTGGATATTCTCTTGAAGTATATTTTGCTGCGCTTTTAATCTATAAACTTGGCAAGGCTAGAAGGAAATCTTGTGCAGTGAAAGTTTTTAATCTTTTGCCTGATGAACAAAAGTGTTCGCCAACATACACTGCTCTGATTAGTGCTTACTTCTGTGCTGGCAGTGTTGACAAAGGACTTCAAATTTGGAAAACTATGAAGGAAAAAGGGATTGCTCCTTCTTTAGGATCAAATGCAGTGATACTGGCTGGTCTTCGAAAAAGTAAAAGAGTTTGTGAAACAGAAATTTGTAGGAAGGAGATAAACAACTTCCAGATTGACTGCCAATCTCAGGCTATGAGACCCACATCGGAGAAGATCTGTGATCTTCTGTTTGGTGGAAGTTTGGTATTTTGA 1941 37.76 MRFVYFGGCLHTQEKRGSKKGSGRRRLECQLCAFECLAVFWAGGFDTGVCAIAQRLGDFRVLDSLLFELVRFFPFFKRLLIFQMRYFHVKAVHVFRQYEEKRPRKILRGKMKKSDKFIAMKAADPKVYMRDIIKSIYNVLRNSSWDYAQGHLEMLPIRWDSYTINQVLKTHPPMEKAWLFFNWASYRKGFKHDHFTYTTMLDIFGEAGRISSMNHLFIQMQEKEIKIDAVTYTSMMHWLSSSGDVEGAIKLWDEMKTKDCSPTLVSYTAFMKILFDNGRAEEAIDVYKEMLQFGLSPNCHTYTVLMEFLMKSGKYEEALEILYKMQEAGVHPDKAACNILIHKCSKAGQAHVITKILEYMKENHLVLRHPVFLEAFETLKSCSHSSALLRQVNPHISTESFSKEVKVSLTTNTSATFILDSGLMSILLRKENLIAVDRLLAGLIDEGVKLDSSLILTVIDVNCSRNRPDGVLLAFEYCLKMGVILQRNGYLNIIGILIRSNLFSKVLKVVQEMIMGGYSLEVYFAALLIYKLGKARRKSCAVKVFNLLPDEQKCSPTYTALISAYFCAGSVDKGLQIWKTMKEKGIAPSLGSNAVILAGLRKSKRVCETEICRKEINNFQIDCQSQAMRPTSEKICDLLFGGSLVF 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11596760 11602332 + BLOR13865 Blo04g00953 59981

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00953 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 228 262 IPR002885 -
Blo04g00953 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 554 588 IPR002885 -
Blo04g00953 646 PANTHER OS10G0358700 PROTEIN 113 643 - -
Blo04g00953 646 SUPERFAMILY TPR-like 90 380 IPR011990 GO:0005515
Blo04g00953 646 Gene3D Tetratricopeptide repeat domain 554 628 IPR011990 GO:0005515
Blo04g00953 646 Gene3D Tetratricopeptide repeat domain 145 294 IPR011990 GO:0005515
Blo04g00953 646 Gene3D Tetratricopeptide repeat domain 377 553 IPR011990 GO:0005515
Blo04g00953 646 SUPERFAMILY TPR-like 237 335 IPR011990 GO:0005515
Blo04g00953 646 TIGRFAM PPR: pentatricopeptide repeat domain 265 299 IPR002885 -
Blo04g00953 646 TIGRFAM PPR: pentatricopeptide repeat domain 557 589 IPR002885 -
Blo04g00953 646 TIGRFAM PPR: pentatricopeptide repeat domain 195 229 IPR002885 -
Blo04g00953 646 TIGRFAM PPR: pentatricopeptide repeat domain 230 263 IPR002885 -
Blo04g00953 646 TIGRFAM PPR: pentatricopeptide repeat domain 300 333 IPR002885 -
Blo04g00953 646 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 113 643 - -
Blo04g00953 646 Pfam PPR repeat 557 586 IPR002885 -
Blo04g00953 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Blo04g00953 646 Pfam Pentacotripeptide-repeat region of PRORP 216 362 IPR033443 -
Blo04g00953 646 Gene3D Tetratricopeptide repeat domain 295 366 IPR011990 GO:0005515
Blo04g00953 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 263 297 IPR002885 -
Blo04g00953 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 193 227 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00953 - - - hbr:110669976 676.781
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00953 Blo-Chr4:11596760 Blo15g00297 Blo-Chr15:3296822 6.33E-07 dispersed
Blo04g00953 Blo-Chr4:11596760 Blo13g00026 Blo-Chr13:424844 6.30E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g913 Blo04g00953 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma03g01018 . Sed01g0084 . . . . . . . . Bhi10g02231 Tan07g1031 Cmetu11g0453 . Hepe10g0832 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010326 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00953 Blo_Chr04 FPKM 1.881069 1.546657 1.533369 1.923743 1.401457 2.041461 1.905639 2.454784 2.618442 3.21097