Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00965 ATGACGAGTAGTTTTAGTAGAAGTGCTTCATTAAACAGGAATACCTCTTTTAAACTGAGGGCTTTGAGCGTCGGAAGTCCGAGAATCAATCGCGGGAACGTGGTATCGCGCTTATGTATTTGGATTGTGGTGATTGGAGCTCTAATTTCATTTCTCATAGCTCTAACTGCTTGTTATTTTTATTCACTTCCTAATCTTACTTTTGATTTCCACGGTTACGGCTTATACAAATCTAATTCTTCTGCAACTACCTGCGATGTCTATAATGGAAATTGGGTTGTGGATGAAAACTACCCATTGTACAATGCAAGAGAATGCCCTTTTGCAGAGAAAGGATTTGATTGTCTAAGTAATGGTAGAAGGGATGAGGATTATCTTAAATGGAGGTGGAAACCGATGAACTGTGATATACGAAGGTTCAATGTACATCAAGTATTGGAAATTTTTAGAAACAAAAGGATTGTTTTCGTTGGCGATTCTATGAGTAGAACACAGTGGGAATCCCTTATTTGTCTTTTGATGAGTGGGGTGGAGGATAAGACGAGTGTTTATGAAATAAATGGGAATCAAATTACTAAGCTGATAAGATTCTTGGGTGTTCGATTTAGTTCATTTAATTTTACTGTTGAGTTCTATCGCTCTGTTTTTTTGGTGCAACATAATTGGTCTCTGAAGAATCAACCGAAGAGAGTGAAATCAGCTCTCAAACTGGACACGCTTGATAGTATTAGCAGTCAGTGGATCGATTCAGATGTTCTCATATTCAACTCTGGACACTGGTGGGTCCCTGGGAAGCTTTTTGACACAGGCTGCTATTTCCAGGTTGGAAATTCTGTAAATCTTGGAATGCCAATCCACACAGCTTTCAGAATAGCACTTGAGACCTGGGCATCGTGGGTGGAGCAAACAATTGACACTAACAAAACACGTGTTTTCTTTCGGACCTTTGAGCCATCTCATTGGAGTGGTCATCCTTATCGAACTTGCAATGTAACCAGTCAACCAGCAGCAAAAACTTCGGGAAAAGAGGAAAGCATATTTTCCAACATAATAATGGAGGTCGTAAAGAATATGACAGTTCCTACAAATGTTTTGGATATAACTCCGTTGTCAGCTAAACGCACTGATGCACATGTTGATGGAAAGGTGATGATGGAGTACATCGGAGCAACGGGAATTCCAATGGAATTCAAAGACGTACCAATTTCACAAGGGATTGAATTTAATTTCATACTAGGCTTTGCTATTGATTCAGACCTTGGAGGGAATCCTCAAAATGGCATATTTTCACCCTACTGGGTTTCCACTTTGGACCCTCAATCCGTAAAAGATATCAAAGCAGCCAAACCCAATGTCAAAGTCTTGGCCAGCCTTTCCGGTTGGAGCATCGGCGATAAGGTCCTTCGCTGGTACGACCCGATCGATCAGAATCTTTGGATTTCCAACGCTTTTTCTTCCCTTCAATCCCTAGCGATCAAATACAGTCTTGATGGTTTCGATATCGATTATGAAAATTTCCCAAATCATAATTCATCGTTTGCATATTGCATTGGAGAACTTCTAACCCTCTTGAAGAACCAAAGTGTCATTTCCTTAGCAACTATTGCTCCCTTTTACTCCACAACCAAGCCCTACATTGAGCTCTTTCAGCGGTACGGGGACATCATCGATTATGTTAATTACCAATTTTATACAGATAACGCGAGATTTCCAAGTCAATATTTGACGGCGTTTCTTGTTCGAGCCAAGCAATTCGATGCAGAGAAGTTGTTGCCGAGCTATGAGGTCAATGGAAAAGGGATTCAAGGAGATGCATTCTTTGCAGCTTTGAATCTAATAAAGCAAAATGGACATGACTTTAAAGGGATTATGATCTTCTCTGCGGATGCTTCCTCGTCAAATAATTACTACTACGAGAGAAAATCGCAAGCATTTTTGCTTAATCAAACTTTTGCATAG 1959 40.12 MTSSFSRSASLNRNTSFKLRALSVGSPRINRGNVVSRLCIWIVVIGALISFLIALTACYFYSLPNLTFDFHGYGLYKSNSSATTCDVYNGNWVVDENYPLYNARECPFAEKGFDCLSNGRRDEDYLKWRWKPMNCDIRRFNVHQVLEIFRNKRIVFVGDSMSRTQWESLICLLMSGVEDKTSVYEINGNQITKLIRFLGVRFSSFNFTVEFYRSVFLVQHNWSLKNQPKRVKSALKLDTLDSISSQWIDSDVLIFNSGHWWVPGKLFDTGCYFQVGNSVNLGMPIHTAFRIALETWASWVEQTIDTNKTRVFFRTFEPSHWSGHPYRTCNVTSQPAAKTSGKEESIFSNIIMEVVKNMTVPTNVLDITPLSAKRTDAHVDGKVMMEYIGATGIPMEFKDVPISQGIEFNFILGFAIDSDLGGNPQNGIFSPYWVSTLDPQSVKDIKAAKPNVKVLASLSGWSIGDKVLRWYDPIDQNLWISNAFSSLQSLAIKYSLDGFDIDYENFPNHNSSFAYCIGELLTLLKNQSVISLATIAPFYSTTKPYIELFQRYGDIIDYVNYQFYTDNARFPSQYLTAFLVRAKQFDAEKLLPSYEVNGKGIQGDAFFAALNLIKQNGHDFKGIMIFSADASSSNNYYYERKSQAFLLNQTFA 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11902307 11910161 - BLOR13877 Blo04g00965 59993

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00965 652 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 496 504 IPR001579 GO:0004553|GO:0005975
Blo04g00965 652 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 139 380 IPR026057 GO:0016740
Blo04g00965 652 Pfam PMR5 N terminal Domain 84 136 IPR025846 -
Blo04g00965 652 Pfam Glycosyl hydrolases family 18 440 565 IPR001223 GO:0005975
Blo04g00965 652 Gene3D Glycosidases 381 649 - -
Blo04g00965 652 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 382 652 IPR001223 GO:0005975
Blo04g00965 652 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 30 379 IPR029962 GO:0016413
Blo04g00965 652 PANTHER PROTEIN TRICHOME BEREFRINGENCE-LIKE 7 30 379 - -
Blo04g00965 652 SUPERFAMILY (Trans)glycosidases 380 646 IPR017853 -
Blo04g00965 652 PRINTS 2-S globulin family signature 554 577 IPR000677 -
Blo04g00965 652 PRINTS 2-S globulin family signature 442 460 IPR000677 -
Blo04g00965 652 PRINTS 2-S globulin family signature 400 419 IPR000677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00965 - - - rcu:8259144 536.184
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00905 Blo-Chr2:34998358 Blo04g00965 Blo-Chr4:11902307 7.96E-20 dispersed
Blo04g00965 Blo-Chr4:11902307 Blo05g00788 Blo-Chr5:29041985 8.97E-111 dispersed
Blo07g00636 Blo-Chr7:20625011 Blo04g00965 Blo-Chr4:11902307 4.17E-55 dispersed
Blo04g00965 Blo-Chr4:11902307 Blo16g01164 Blo-Chr16:40180205 3.23E-61 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1281 Blo04g00965 . . . Bpe15g00402 . . . Cmo02g00629 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda14g01054 . . Bma03g01030 . . . . . . . . Cpe05g01063 . Bhi10g01666 . . . . . . Cla02g00060 Cam02g0061 Cec02g0063 Cco02g0056 Clacu02g0060 Cmu02g0059 Cre02g0399 Lsi10g00720 . . Cme11g00064
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010327 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00965 Blo_Chr04 FPKM 1.021251 1.672951 1.296445 1.562713 1.446859 1.734741 1.931613 1.666649 1.567339 1.429853