Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00966 ATGGCTTCCCTTTTCCTCCTCTCCACTATCTCCGTCCTCACCTTTTTCACCTTGTCTTCTGCATCGCACCACCACCACCACCATCCGTATAAATCACCTCATTTCACAGCAGCGCCTCCAAAAACGCCGGAGCCCTCCGCAATCTTCGTCCGACCCGAGATCCAGCAAGCCTGCAAGGCAACCCGGTTTCCCGATCAATGCGAATCCTCCCTATCTGAATCTAGTGCCACAGCTCCAAACGCGAACTTAATTGAAATCATTCAATCTGCCACCCGGGTCTCGCTAGAAAACCTGAAGACGGCGCAATCAATGGTGGAGGACATTCTAGACTCGTCGGTGGGGAATCTGAACCGCACAACCGCCGCAAGAAACTGCCAGGAAGTGCTCCGGAACTCGAACTACCGCATTTCATCAATAATTGATCGGCAGCCATGTAGTCGAATCAAAGACAGCCGGGCGTGGATGAGCGCTGCTCTTCTCTTCCAGTACGATTGCTGGTCGGCGCTCAAATACGCAAATGACACCCAAAAGGTCGATAAAACGATGTCGTTTTTAAACTCCTTAATCGAGCTGTCGAGCAACGCGCTTAGCATGATGGCCGCTTACGATGTTTTCGGCAACCAGACTGGGTCGTGGGGTCCGCCCAAGACCGAGAGAAACGGGTTTTGGGAGGGAGTCGGGCCTCGTTCGAGCGGCGGGCCTAGTTTGGGATTTGCCGGTGGGTTCCCGTCTAAGCTGACTGTAGACGTGACAGTTTGCAATGACAAAAGTGACGGCTGTTACAAGACAGTGCAGGAAGCCGTTGATGCCGCGCCGGACAACAAGGCGGCACGGGGGTTCGTAATTCACATAAAAGAAGGCGTTTACGAAGAGACAGTCAGGGTGCCTTTGGAGAAGAAGAACATCGTGTTTTTGGGAGACGGGATGGGAAAAACGATCATTACGGGGTCATTAAAAGCTGGCCAACCCGGTATTTCCACCTACAACTCTGCCACAGTCGGAGTTGCTGGTGATGGATTCATGGCTAGTGGTCTCACGATACAAAACACGGCAGGCCCGGATGCTCACCAAGCCGTAGCTTTCCGATCCGATAGTGATCTCTCCATTATTGAAAACGTCGAGTTTCTGGGCAACCAAGACACTCTCTATGCTCACTCTCTCCGCCAATTCTACAAATCATGTCGAATCGAAGGCAACGTCGATTTCATCTTTGGAAATTCCGCTTCCTTTTTTCAAGATTGCATTATCTTAGTAAGACCCCGCCAAATCAGGCCGGAAAAAGGAGAAAACAATGCAATCACCGCTCACGGAAGAACCGACCCAGCGCAAACGACAGGCTTTGTGTTTCAAAATTGTGTGATCAACGGAACGGAAGATTACATACAGTTGTATTATAGCAAGCCTAAGGTGCACAATAACTTCTTGGGAAGGCCTTGGAAAGAGTATTCTAGGACTGTTTTTCTCCATTGCAATCTTGAAGCTCTCATTAGACAGCAAGGATGGATGCCGTGGAGTGGTGATTTCGCTTTGGAAACTCTTTTCTACGGCGAGTTTGAGAGTTTCGGACCGGGATCGAATGTCTCTGGTCGAGTGTCGTGGAGCGAGGCACAGCGTAAAAACGCAGTGACAGTGCCTTTAAATTCCATCTACACAGATCGAGCAGATCCAAATCTGGATCTGGCGATCTGGGAGACCCGCTACAACGAGAGTATGAAGCTGCAACGCGACGACAAGAGTTTGAAGCTGCGACGCGACGGGTTGGCGATTGCGACGCGACGGGTTGGCGACGACGAGTTGGCGAGTGCGACTGCGATTTGCGACGACGAGGTAGCGAGTGCGATTTCTCAACTGATTCCGATTGCAATCTGGAATGCAATCTGTATTCCAGATTACAATATGGAAATTGCAATTTACAGATTGATTTATAAATTGCAATATGGAATGCAATTGCAATCTGTAATACAGATTGCATTCCAGATTGCAATCTGCAATGCAATGTTGGCGAATTACTCAGGGAGCACAATGGACCGAGCTAGGAAATTCATGCAGAAGCGTGGGAGGAGAAGGGGGGAGGCTAGTGAAAGACGAGCAACCGAGGCGGTGGAAGCCGCGTGGGTTGAATATGTTCAACACGAGGCGGTTGAAGAAGTTGAACAAGCAACGACGGTGGAAGACGAAGACACCGCCGAGCCTGAACAAGGAGAAACAGAGTTATTATTCAGTACAGACGATGCCAGAAGACGGTATGAAGAAGATGTTGAACACCATGGCATTATTATTTCCAAAGTAGTCGATTTTGACTCTTTCACGGAAATGGGCATTCAACATATGCTGGAAAATGCTAGATTACTCAGGTTGTGTCGGATGGGGGGCACTTATTGCGAGAGAGTCATTAAGATGTTTTACGCAAATTTCCAACTTTTTGAGGAGCCAGTTGAGGTGCAAACCTATATTTTTGGACGGGAGTTGAGATTCACTCCCGACCATAACAATACAATACTTGAATGTTATGGGGCAAGCGAGGAATATTATGGCATAGCTAAGACGAAGCCACCATTTATCAAGGAAGGAGATGGGCTAGCCGTTCTTAGATTGTTGCACAATGATCCTGAGATTGCCCATTACAAGAGGCCAAAGGCTAATGAGTTAAATGTAATGGCCCGAGGAAAAAAAGTGAACATTGGATATATCATAGCGAAGCACATGGAAGAGGTCGTCAACAACCCATCAATGAGCCTACCGTACAATTGGCTTATCCAGACTATAGTTGAGCAGTTTGGGGTTCCCATTTCTGCGAATGAGCCAAGAATTGAAGCGACGACCACTGACACCTACAAAAGAGCCAACTTGGATCGATTGGGCATCACCCAAGTTGATGTCGGATGGTTCCACAAGTCCAAACAGAAGGCAGCACCTCCACCCGTTACAGAGCCTCAGTATGCAGGCACCTCTTATGATATGCCGCCTCCTCCCCACTTAGAGCCTGAGTATGCATATGCAGCCCCCGAATATGAAATGCCACCTCCTCCACAATCATCACACTTTACTGCGATGCCTGAGGAGTCATCTGCCTGGATGAGCAGAATGGAGGAGCTCCATCATGCGTCAATGACCAGAATGCAAATGATGGAGGAGCACGTGCAAAGGCAACAAATTGAGCTACAAAGAGCTAACGAGCTCGCAACAGAGAGGTGGGCCATTGCCCAACAGTGGCAGTTGGAAGCATCAGAGAGCAGACGCGCCACAGATTAG 3252 48.99 MASLFLLSTISVLTFFTLSSASHHHHHHPYKSPHFTAAPPKTPEPSAIFVRPEIQQACKATRFPDQCESSLSESSATAPNANLIEIIQSATRVSLENLKTAQSMVEDILDSSVGNLNRTTAARNCQEVLRNSNYRISSIIDRQPCSRIKDSRAWMSAALLFQYDCWSALKYANDTQKVDKTMSFLNSLIELSSNALSMMAAYDVFGNQTGSWGPPKTERNGFWEGVGPRSSGGPSLGFAGGFPSKLTVDVTVCNDKSDGCYKTVQEAVDAAPDNKAARGFVIHIKEGVYEETVRVPLEKKNIVFLGDGMGKTIITGSLKAGQPGISTYNSATVGVAGDGFMASGLTIQNTAGPDAHQAVAFRSDSDLSIIENVEFLGNQDTLYAHSLRQFYKSCRIEGNVDFIFGNSASFFQDCIILVRPRQIRPEKGENNAITAHGRTDPAQTTGFVFQNCVINGTEDYIQLYYSKPKVHNNFLGRPWKEYSRTVFLHCNLEALIRQQGWMPWSGDFALETLFYGEFESFGPGSNVSGRVSWSEAQRKNAVTVPLNSIYTDRADPNLDLAIWETRYNESMKLQRDDKSLKLRRDGLAIATRRVGDDELASATAICDDEVASAISQLIPIAIWNAICIPDYNMEIAIYRLIYKLQYGMQLQSVIQIAFQIAICNAMLANYSGSTMDRARKFMQKRGRRRGEASERRATEAVEAAWVEYVQHEAVEEVEQATTVEDEDTAEPEQGETELLFSTDDARRRYEEDVEHHGIIISKVVDFDSFTEMGIQHMLENARLLRLCRMGGTYCERVIKMFYANFQLFEEPVEVQTYIFGRELRFTPDHNNTILECYGASEEYYGIAKTKPPFIKEGDGLAVLRLLHNDPEIAHYKRPKANELNVMARGKKVNIGYIIAKHMEEVVNNPSMSLPYNWLIQTIVEQFGVPISANEPRIEATTTDTYKRANLDRLGITQVDVGWFHKSKQKAAPPPVTEPQYAGTSYDMPPPPHLEPEYAYAAPEYEMPPPPQSSHFTAMPEESSAWMSRMEELHHASMTRMQMMEEHVQRQQIELQRANELATERWAIAQQWQLEASESRRATD 1083
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11941301 11946666 + BLOR13878 Blo04g00966 59994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00966 1083 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 199 IPR035513 -
Blo04g00966 1083 Gene3D Invertase/pectin methylesterase inhibitor family protein 51 201 IPR035513 -
Blo04g00966 1083 CDD PMEI-like_3 57 203 - -
Blo04g00966 1083 Pfam Pectinesterase 249 538 IPR000070 GO:0030599|GO:0042545
Blo04g00966 1083 PANTHER PECTINESTERASE 9 537 - -
Blo04g00966 1083 SMART PMEI_2 49 198 IPR006501 GO:0004857
Blo04g00966 1083 SUPERFAMILY Pectin lyase-like 248 558 IPR011050 -
Blo04g00966 1083 PANTHER PECTINESTERASE 9 537 - -
Blo04g00966 1083 Pfam Plant invertase/pectin methylesterase inhibitor 54 198 IPR006501 GO:0004857
Blo04g00966 1083 Gene3D - 243 553 IPR012334 -
Blo04g00966 1083 Coils Coil 1040 1060 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00966 Blo-Chr4:11941301 Blo07g00872 Blo-Chr7:27353065 0 dispersed
Blo01g00825 Blo-Chr1:12910440 Blo04g00966 Blo-Chr4:11941301 0 transposed
Blo04g01294 Blo-Chr4:27434920 Blo04g00966 Blo-Chr4:11941301 2.11E-169 transposed
Blo05g00671 Blo-Chr5:22055860 Blo04g00966 Blo-Chr4:11941301 2.17E-177 transposed
Blo08g00420 Blo-Chr8:8278222 Blo04g00966 Blo-Chr4:11941301 0 transposed
Blo11g00298 Blo-Chr11:2415533 Blo04g00966 Blo-Chr4:11941301 0 transposed
Blo15g00429 Blo-Chr15:6172089 Blo04g00966 Blo-Chr4:11941301 0 transposed
Blo16g00698 Blo-Chr16:26886581 Blo04g00966 Blo-Chr4:11941301 0 transposed
Blo16g00522 Blo-Chr16:21412622 Blo04g00966 Blo-Chr4:11941301 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00966 - - vvi:100257530 779.245