Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g01010 ATGGGAAGTGGGTTTGGACAATCAACAAGCGTGCCACCACAAAATCCGTCTTGTTCAAGCAATAATAGCAATGATGCAGGCGATTTTGAGTGCAATATTTGCTTTGAATTGCCTCAAGATCCCATTGTTACTCTCTGTGGACATCTCTTTTGCTGGCCTTGCTTGTACAGATGGCTGCATCATCATTCACATTCACAAGAATGCCCAGTTTGTAAGGCTGTTGTTCAGGAAGATAAGTTGGTTCCTCTCTACGGCAGGGGAAAAACTCAGACTGATCCAAGATCGAAATCATATCCTCAGTTTGATATTCCCAATCGCCCGGCTGGTCAACGACCAGAGACTGCTACTCCACCAATGTCAAACCAGTTCACTAATTACGGGTTTGGATTAACAGGTGGTTTTGCACCAACAACTACTGCGAGAATTGGTAACTTCACATTGGCCACTGCTGTTGGTGGTTTGATACCTTCTTTATTTAACATCCAGTTTCATGGATTCTCTGATGCAACTGTTTATGGGACAACTTCAGGTTTTCCCTATCCTTATAATGCATATCATGGGGGTCATGCTCACAGATTTCCTCACCCGCGAAGCCGAGGACAACAAGCAGACAAATTTTTGAAGAATCTTCTTTTATTGATTGCCGTCTTTGTGATTCTTGCTCTGCTTTGTTGG 675 43.41 MGSGFGQSTSVPPQNPSCSSNNSNDAGDFECNICFELPQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEDKLVPLYGRGKTQTDPRSKSYPQFDIPNRPAGQRPETATPPMSNQFTNYGFGLTGGFAPTTTARIGNFTLATAVGGLIPSLFNIQFHGFSDATVYGTTSGFPYPYNAYHGGHAHRFPHPRSRGQQADKFLKNLLLLIAVFVILALLCW 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13226923 13227597 + BLOR13922 Blo04g01010 60038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g01010 225 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Blo04g01010 225 ProSiteProfiles Zinc finger RING-type profile. 31 72 IPR001841 -
Blo04g01010 225 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 224 IPR045103 GO:0005783|GO:0006511|GO:0061630
Blo04g01010 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 85 IPR013083 -
Blo04g01010 225 MobiDBLite consensus disorder prediction 1 21 - -
Blo04g01010 225 PANTHER RING ZINC FINGER PROTEIN-RELATED 3 224 - -
Blo04g01010 225 SMART ring_2 31 71 IPR001841 -
Blo04g01010 225 SUPERFAMILY RING/U-box 27 84 - -
Blo04g01010 225 MobiDBLite consensus disorder prediction 85 116 - -
Blo04g01010 225 CDD RING-HC_AtRMA_like 29 73 - -
Blo04g01010 225 Pfam Zinc finger, C3HC4 type (RING finger) 29 76 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g01010 Blo-Chr4:13226923 Blo07g00946 Blo-Chr7:28752950 3.26E-27 dispersed
Blo06g00237 Blo-Chr6:11624933 Blo04g01010 Blo-Chr4:13226923 6.32E-126 transposed
Blo07g01278 Blo-Chr7:32978051 Blo04g01010 Blo-Chr4:13226923 2.84E-28 transposed
Blo12g00913 Blo-Chr12:27320350 Blo04g01010 Blo-Chr4:13226923 1.43E-77 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g01010 K10666 - mnt:21392517 396.356