Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g01010 ATGGGAAGTGGGTTTGGACAATCAACAAGCGTGCCACCACAAAATCCGTCTTGTTCAAGCAATAATAGCAATGATGCAGGCGATTTTGAGTGCAATATTTGCTTTGAATTGCCTCAAGATCCCATTGTTACTCTCTGTGGACATCTCTTTTGCTGGCCTTGCTTGTACAGATGGCTGCATCATCATTCACATTCACAAGAATGCCCAGTTTGTAAGGCTGTTGTTCAGGAAGATAAGTTGGTTCCTCTCTACGGCAGGGGAAAAACTCAGACTGATCCAAGATCGAAATCATATCCTCAGTTTGATATTCCCAATCGCCCGGCTGGTCAACGACCAGAGACTGCTACTCCACCAATGTCAAACCAGTTCACTAATTACGGGTTTGGATTAACAGGTGGTTTTGCACCAACAACTACTGCGAGAATTGGTAACTTCACATTGGCCACTGCTGTTGGTGGTTTGATACCTTCTTTATTTAACATCCAGTTTCATGGATTCTCTGATGCAACTGTTTATGGGACAACTTCAGGTTTTCCCTATCCTTATAATGCATATCATGGGGGTCATGCTCACAGATTTCCTCACCCGCGAAGCCGAGGACAACAAGCAGACAAATTTTTGAAGAATCTTCTTTTATTGATTGCCGTCTTTGTGATTCTTGCTCTGCTTTGTTGG 675 43.41 MGSGFGQSTSVPPQNPSCSSNNSNDAGDFECNICFELPQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEDKLVPLYGRGKTQTDPRSKSYPQFDIPNRPAGQRPETATPPMSNQFTNYGFGLTGGFAPTTTARIGNFTLATAVGGLIPSLFNIQFHGFSDATVYGTTSGFPYPYNAYHGGHAHRFPHPRSRGQQADKFLKNLLLLIAVFVILALLCW 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13226923 13227597 + BLOR13922 Blo04g01010 60038

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g01010 225 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Blo04g01010 225 ProSiteProfiles Zinc finger RING-type profile. 31 72 IPR001841 -
Blo04g01010 225 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 224 IPR045103 GO:0005783|GO:0006511|GO:0061630
Blo04g01010 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 85 IPR013083 -
Blo04g01010 225 MobiDBLite consensus disorder prediction 1 21 - -
Blo04g01010 225 PANTHER RING ZINC FINGER PROTEIN-RELATED 3 224 - -
Blo04g01010 225 SMART ring_2 31 71 IPR001841 -
Blo04g01010 225 SUPERFAMILY RING/U-box 27 84 - -
Blo04g01010 225 MobiDBLite consensus disorder prediction 85 116 - -
Blo04g01010 225 CDD RING-HC_AtRMA_like 29 73 - -
Blo04g01010 225 Pfam Zinc finger, C3HC4 type (RING finger) 29 76 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g01010 K10666 RNF5; E3 ubiquitin-protein ligase RNF5 [EC:2.3.2.27] - mnt:21392517 396.356
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g01010 Blo-Chr4:13226923 Blo07g00946 Blo-Chr7:28752950 3.26E-27 dispersed
Blo06g00237 Blo-Chr6:11624933 Blo04g01010 Blo-Chr4:13226923 6.32E-126 transposed
Blo07g01278 Blo-Chr7:32978051 Blo04g01010 Blo-Chr4:13226923 2.84E-28 transposed
Blo12g00913 Blo-Chr12:27320350 Blo04g01010 Blo-Chr4:13226923 1.43E-77 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo17g00514 . 78 545 C3H Transcription Factor Family AT2G31510 77.7 1.7e-230 795.4
Blo01g00201 . 211 697 C3H Transcription Factor Family AT2G31510 75.5 1.1e-226 782.7
Blo18g00504 . 55 495 C3H Transcription Factor Family AT2G31510 76.4 6.9e-208 720.3
Blo01g00201 . 194 655 C3H Transcription Factor Family AT2G31770 59.2 2.7e-168 589.0
Blo17g00514 . 47 521 C3H Transcription Factor Family AT2G31770 57.5 1.0e-167 587.0
Blo18g00504 . 25 452 C3H Transcription Factor Family AT2G31770 54.9 6.6e-143 504.6
Blo17g00514 . 61 543 C3H Transcription Factor Family AT2G31760 56.2 8.1e-167 583.9
Blo01g00201 . 194 655 C3H Transcription Factor Family AT2G31760 58.9 2.4e-166 582.4
Blo18g00504 . 68 452 C3H Transcription Factor Family AT2G31760 59.3 2.2e-143 506.1
Blo02g00244 . 1 193 C3H Transcription Factor Family AT3G03550 52.6 2.6e-55 213.0
Blo11g00325 . 80 273 C3H Transcription Factor Family AT3G02290 51.7 2.4e-49 192.6
Blo18g00416 . 4 172 C3H Transcription Factor Family AT3G02290 57.5 4.5e-48 188.3
Blo14g00463 . 1 304 C3H Transcription Factor Family AT1G11020 76.9 5.5e-137 484.2
Blo07g00818 . 53 212 C3H Transcription Factor Family AT1G50440 75.0 4.8e-66 248.1
Blo06g00177 . 621 879 C3H Transcription Factor Family AT5G08750 59.3 8.8e-83 304.3
Blo09g00173 . 1 418 C3H Transcription Factor Family AT3G16090 73.0 4.9e-161 564.7
Blo12g01130 . 47 201 C3H Transcription Factor Family AT1G22510 74.8 2.2e-62 235.7
Blo18g00416 . 1 171 C3H Transcription Factor Family AT5G38895 53.1 9.7e-44 174.5
Blo06g00237 . 57 267 C3H Transcription Factor Family AT1G19310 60.9 6.3e-71 264.2
Blo12g00913 CCT,ECH 1232 1422 C3H Transcription Factor Family AT1G19310 66.8 4.5e-69 258.1
Blo04g01010 . 16 222 C3H Transcription Factor Family AT1G19310 59.4 1.1e-67 253.4
Blo12g01130 . 51 201 C3H Transcription Factor Family AT1G72175 72.8 4.1e-58 221.1
Blo05g00780 . 1 322 C3H Transcription Factor Family AT2G22120 83.3 4.7e-161 564.3
Blo06g01191 . 1 390 C3H Transcription Factor Family AT1G18470 74.1 4.1e-172 601.3
Blo15g00366 . 30 415 C3H Transcription Factor Family AT1G18470 72.8 6.7e-167 583.9
Blo01g00201 . 194 655 C3H Transcription Factor Family AT2G31770 59.2 2.7e-168 589.0
Blo17g00514 . 47 521 C3H Transcription Factor Family AT2G31770 57.5 1.0e-167 587.0
Blo18g00504 . 25 452 C3H Transcription Factor Family AT2G31770 54.9 6.6e-143 504.6
Blo17g00514 . 61 543 C3H Transcription Factor Family AT2G31760 56.2 8.1e-167 583.9
Blo01g00201 . 194 655 C3H Transcription Factor Family AT2G31760 58.9 2.4e-166 582.4
Blo18g00504 . 68 452 C3H Transcription Factor Family AT2G31760 59.3 2.2e-143 506.1
Blo03g00497 . 14 239 C3H Transcription Factor Family AT5G55970 68.5 3.0e-95 345.5
Blo06g00177 . 621 885 C3H Transcription Factor Family AT5G63780 55.5 4.7e-76 282.0
Blo03g00497 . 16 309 C3H Transcription Factor Family AT4G26580 65.8 6.2e-115 411.0
Blo05g00205 . 1 247 C3H Transcription Factor Family AT3G63530 50.8 9.3e-68 253.8
Blo11g00717 . 96 499 C3H Transcription Factor Family AT5G01960 63.5 7.5e-126 447.6
Blo01g01023 . 1 293 C3H Transcription Factor Family AT5G01960 53.4 5.7e-65 245.4
Blo01g01024 . 40 157 C3H Transcription Factor Family AT5G01960 86.4 2.2e-56 216.9
Blo15g00434 CCT 1 151 C3H Transcription Factor Family AT2G04240 52.8 1.3e-38 156.4
Blo02g01173 . 392 751 C3H Transcription Factor Family AT5G45290 55.5 8.0e-96 348.2
Blo03g00266 . 8 164 C3H Transcription Factor Family AT5G45290 67.3 2.7e-51 200.3
Blo07g01162 BCT 68 232 C3H Transcription Factor Family AT5G05830 64.1 2.6e-55 212.2
Blo09g00251 BCT 60 219 C3H Transcription Factor Family AT5G05830 58.0 2.9e-51 198.7
Blo18g00416 . 3 171 C3H Transcription Factor Family AT5G15790 57.5 1.4e-49 193.4
Blo11g00325 . 92 273 C3H Transcription Factor Family AT5G15790 55.3 4.5e-48 188.3
Blo04g00116 BCT 1 255 C3H Transcription Factor Family AT3G55530 78.1 2.3e-104 375.6
Blo13g00883 BCT 326 530 C3H Transcription Factor Family AT3G55530 78.5 1.6e-81 299.7
Blo06g00466 . 1 274 C3H Transcription Factor Family AT1G63900 74.9 7.4e-114 407.1
Blo02g00262 . 12 397 C3H Transcription Factor Family AT2G44580 56.3 3.4e-125 445.3
Blo06g00237 . 65 192 C3H Transcription Factor Family AT1G74990 57.6 1.3e-39 159.5
Blo12g00913 CCT,ECH 1234 1352 C3H Transcription Factor Family AT1G74990 60.0 1.6e-37 152.5
Blo18g00251 . 80 395 C3H Transcription Factor Family AT5G20910 61.7 2.6e-107 385.6
Blo09g00173 . 119 419 C3H Transcription Factor Family AT1G65040 66.3 1.4e-100 363.2
Blo04g01010 . 19 223 C3H Transcription Factor Family AT2G23780 64.4 1.2e-74 276.6
Blo06g00237 . 61 268 C3H Transcription Factor Family AT2G23780 61.6 2.0e-72 269.2
Blo12g00913 CCT,ECH 1235 1432 C3H Transcription Factor Family AT2G23780 55.8 1.6e-58 223.0
Blo11g00108 . 61 374 C3H Transcription Factor Family AT3G10810 55.6 5.4e-83 305.4
Blo09g00355 . 1 313 C3H Transcription Factor Family AT3G10810 54.1 1.9e-80 297.0
Blo07g01208 . 1 314 C3H Transcription Factor Family AT3G10810 54.1 3.3e-80 296.2
Blo02g01115 . 1 161 C3H Transcription Factor Family AT1G63840 50.3 1.4e-38 156.4
Blo06g01030 . 4 359 C3H Transcription Factor Family AT1G68070 66.7 3.4e-129 458.4
Blo03g00199 . 53 370 C3H Transcription Factor Family AT1G68070 50.8 3.4e-84 308.9
Blo12g00847 . 5 183 C3H Transcription Factor Family AT1G76410 53.6 4.2e-49 191.4
Blo18g00046 . 1 397 C3H Transcription Factor Family AT1G80400 54.5 1.7e-114 409.8
Blo06g00675 . 55 380 C3H Transcription Factor Family AT1G80400 59.5 8.0e-109 391.0
Blo17g00036 . 1 348 C3H Transcription Factor Family AT1G80400 51.4 5.4e-89 325.1
Blo15g00751 BCT 85 223 C3H Transcription Factor Family AT2G15530 66.4 3.7e-53 206.8
Blo17g00514 . 78 545 C3H Transcription Factor Family AT2G31510 77.7 1.7e-230 795.4
Blo01g00201 . 211 697 C3H Transcription Factor Family AT2G31510 75.5 1.1e-226 782.7
Blo18g00504 . 55 495 C3H Transcription Factor Family AT2G31510 76.4 6.9e-208 720.3
Blo01g01251 . 5 171 C3H Transcription Factor Family AT2G35910 56.8 1.1e-48 190.3
Blo07g01280 . 12 333 C3H Transcription Factor Family AT2G41980 72.8 2.5e-139 491.9
Blo07g00335 CCT,ECH 57 314 C3H Transcription Factor Family AT2G41980 80.2 2.0e-128 455.7
Blo15g00087 CCT,ECH 285 542 C3H Transcription Factor Family AT2G41980 79.8 2.2e-127 452.2
Blo02g00324 BCT 571 844 C3H Transcription Factor Family AT2G41980 75.5 3.5e-125 444.9
Blo16g00472 BCT 29 302 C3H Transcription Factor Family AT2G41980 74.4 2.3e-124 442.2
Blo13g00641 . 249 504 C3H Transcription Factor Family AT2G41980 78.1 1.1e-123 439.9
Blo04g00397 . 1238 1498 C3H Transcription Factor Family AT2G41980 75.5 5.8e-120 427.6
Blo02g00628 . 115 382 C3H Transcription Factor Family AT3G06140 60.2 8.1e-89 324.3
Blo07g01402 BCT 33 321 C3H Transcription Factor Family AT3G09770 61.5 5.9e-89 324.7
Blo09g00546 BCT 30 311 C3H Transcription Factor Family AT3G09770 58.8 2.2e-83 306.2
Blo11g00595 . 169 733 C3H Transcription Factor Family AT3G26730 52.1 3.7e-149 525.8
Blo13g00055 . 391 698 C3H Transcription Factor Family AT3G47990 70.8 1.0e-129 459.9
Blo02g00244 . 6 186 C3H Transcription Factor Family AT5G17600 53.8 1.2e-50 197.6
Blo12g00847 . 5 184 C3H Transcription Factor Family AT1G20823 55.6 8.2e-51 197.2
Blo04g00872 . 15 235 C3H Transcription Factor Family AT5G66070 69.7 2.4e-75 278.9
Blo05g00700 . 50 256 C3H Transcription Factor Family AT5G66070 76.9 1.7e-73 272.7
Blo06g01191 . 5 426 C3H Transcription Factor Family AT1G73950 67.5 2.2e-160 562.4
Blo15g00366 . 34 452 C3H Transcription Factor Family AT1G73950 66.1 2.2e-157 552.4
Blo06g01030 . 7 253 C3H Transcription Factor Family AT2G01735 61.7 5.2e-82 301.2
Blo03g00199 . 53 265 C3H Transcription Factor Family AT2G01735 50.9 9.9e-49 190.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001146 5 2 2 4 3 2 4 2 2 2 2 2 4 2 2 4 2 6 4 2 2 2 2 2 2 2 2 3 2 2 79
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g01010 Blo_Chr04 FPKM 49.895756 55.054348 27.938076 27.561998 38.918114 36.955574 39.315804 28.983139 27.414957 27.579182