Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Blo04g01010 | ATGGGAAGTGGGTTTGGACAATCAACAAGCGTGCCACCACAAAATCCGTCTTGTTCAAGCAATAATAGCAATGATGCAGGCGATTTTGAGTGCAATATTTGCTTTGAATTGCCTCAAGATCCCATTGTTACTCTCTGTGGACATCTCTTTTGCTGGCCTTGCTTGTACAGATGGCTGCATCATCATTCACATTCACAAGAATGCCCAGTTTGTAAGGCTGTTGTTCAGGAAGATAAGTTGGTTCCTCTCTACGGCAGGGGAAAAACTCAGACTGATCCAAGATCGAAATCATATCCTCAGTTTGATATTCCCAATCGCCCGGCTGGTCAACGACCAGAGACTGCTACTCCACCAATGTCAAACCAGTTCACTAATTACGGGTTTGGATTAACAGGTGGTTTTGCACCAACAACTACTGCGAGAATTGGTAACTTCACATTGGCCACTGCTGTTGGTGGTTTGATACCTTCTTTATTTAACATCCAGTTTCATGGATTCTCTGATGCAACTGTTTATGGGACAACTTCAGGTTTTCCCTATCCTTATAATGCATATCATGGGGGTCATGCTCACAGATTTCCTCACCCGCGAAGCCGAGGACAACAAGCAGACAAATTTTTGAAGAATCTTCTTTTATTGATTGCCGTCTTTGTGATTCTTGCTCTGCTTTGTTGG | 675 | 43.41 | MGSGFGQSTSVPPQNPSCSSNNSNDAGDFECNICFELPQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEDKLVPLYGRGKTQTDPRSKSYPQFDIPNRPAGQRPETATPPMSNQFTNYGFGLTGGFAPTTTARIGNFTLATAVGGLIPSLFNIQFHGFSDATVYGTTSGFPYPYNAYHGGHAHRFPHPRSRGQQADKFLKNLLLLIAVFVILALLCW | 225 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 13226923 | 13227597 | + | BLOR13922 | Blo04g01010 | 60038 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Blo04g01010 | 225 | ProSitePatterns | Zinc finger RING-type signature. | 46 | 55 | IPR017907 | - | |
Blo04g01010 | 225 | ProSiteProfiles | Zinc finger RING-type profile. | 31 | 72 | IPR001841 | - | |
Blo04g01010 | 225 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 3 | 224 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Blo04g01010 | 225 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 14 | 85 | IPR013083 | - | |
Blo04g01010 | 225 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Blo04g01010 | 225 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 3 | 224 | - | - | |
Blo04g01010 | 225 | SMART | ring_2 | 31 | 71 | IPR001841 | - | |
Blo04g01010 | 225 | SUPERFAMILY | RING/U-box | 27 | 84 | - | - | |
Blo04g01010 | 225 | MobiDBLite | consensus disorder prediction | 85 | 116 | - | - | |
Blo04g01010 | 225 | CDD | RING-HC_AtRMA_like | 29 | 73 | - | - | |
Blo04g01010 | 225 | Pfam | Zinc finger, C3HC4 type (RING finger) | 29 | 76 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Blo04g01010 | Blo-Chr4:13226923 | Blo07g00946 | Blo-Chr7:28752950 | 3.26E-27 | dispersed | |
Blo06g00237 | Blo-Chr6:11624933 | Blo04g01010 | Blo-Chr4:13226923 | 6.32E-126 | transposed | |
Blo07g01278 | Blo-Chr7:32978051 | Blo04g01010 | Blo-Chr4:13226923 | 2.84E-28 | transposed | |
Blo12g00913 | Blo-Chr12:27320350 | Blo04g01010 | Blo-Chr4:13226923 | 1.43E-77 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Blo04g01010 | K10666 | - | mnt:21392517 | 396.356 |