Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g01050 ATGGCCGACGAGCAGCCTACGATCATCGGTCGACGGAGGAGTCGCGGCTCCGAGGCATTGGCCCGTGCCGACGCTCTTCAACGCCTAAAAGCCCTAAGAAGCGGTGGTCGACGGTCTGACAATGGCGGAGTGCAAATTAAAGTGGAAAACCCTATTTACGACAGTGTTCCTGAGGATGAGTACGACGCACTGGTCGCCAAGCGTCGGGAAGAAGTCAAAGGGTTTATCGTTGACGACGACGGTCTTGGGTACTGCGACGAAGGCGAGGAGGAGGATTGGTCTAAAACGGGACTTCCTTTGTCTTCTGATGATTCCGAAGGTGAAATGGAGAGACCTAAGAAAAAGAAGGTGGAGAAGAAAGAATCGCAGCCTAAGAAACAGTCTTCTTCACTTGCAGCAGCTGCAGCACTGATGGGGAAGCAAAGGCTTTCTTCTATGTTCACTTCATCAATTTTTAAGAAGAGTGGCAGAGATGATAAATCTAAAGTTTTGGTATGCGATACACTTGTGGACGATGTAATTGCAGAGTTTGCACCAGATGAGGAAGATAGAGAAAAGCGAAGAAGGGGACAGATGAATTCCATGCAGATTTCGAAGAATTTAGTGCCAATTGCTGGTGTTAAGAGTAACAAACCTTGTGTTCGAACTGTTAATCCGGCATTCAGTCATGAAGTTTCTAAGGCTGTTGACATTGGGGAGTTTGAATGTAGCAAGATTAATACAAATGGAAATTCAGACTTAGTTTCTGTGCAAGGTGATGTAGAAGTTAAGAGAAATGGTGTAAATGAGTTTAAGGAAGATAAAGACTTCAGTTCTAAATTCAGCGAGGACACATTTGGGCATGTGCATGTTTCGCCAACCAAGGAAAGTGTAGTCGAGGAGCAGGATCCAAAAATGATTGAAATAAAGGCAGAACAGGTTCTGAAGGACGGAGCTTATACTTTGAATGCAAACATTAGAGAAGAAAATAATCCTGAATTAAGCGCTATTGTTGGATGGCAGGCAGTAAGAAGTCAGGGGAATTGTGCTGTTGATGGTATTGCAGAAATCAATAACAGCACATGTTCTGAGGAAAAATGTGAATTAGATCTGGACTCAAATAGTGTGATGCCTTTCTACATAGTCGATGCATATGAGGAATTATATGGGGCTAACTCGGGCAATGTGTATCTTTTCGGAAAGGTCAAATCAGGAGGTATGCATCATAGTTGTTGTGTTGTTGTGAAGAACATGCAGAGATGTGCATATGCAATTCCAAAACATTTCTTTGTTCACTCTGATGAGATGATTAAGCTTCAGAAAGATGTGGAAGAGTCTCGACTTTCTCCGGCAGATCTCCGAACAAAACTGCAAGAAGCGACTGCAGGATTAAAGAAGGAAGTATCAAAGCATTTGCTAGATCTCAACATCTCATCTTTTAGCATGACTCCTGTTAAGAGGAAGTATGCCTTTGAGCGACATGATAGACCTTCAGGAGAAAATTACGTTCTTAAGATCAACTATCCGTTCAAGGATATAGGTAAAAGAGCATATAACTACATAAATATCCACAAGGACAACCCACTTCCATCAGATTTAAAAGGAGAATCATTTTCTGCTCTTCTAGGAACTCATTGCAGTGCATTGGAGCTCTTTCTTGTTAAAAGAAAGATAAAGGGACCATCTTGGCTGTCAGTTTCAAAGTTTTCTACTTGCCCTACTCCCCAACGGGTAAGCTGGTGCAAATTTGAGGTGACTGTCGACTCTCCAAAAGACATATGCATTTCTTCAAACAATACAATGGAGATACCTCCTGTTGTTGTTGCTGCAATAAATTTGAAGACTATCATCAATGAAAAGCAGAATGCTAATGAAATTGTTTCTGCATCTGTCATTTGTTGTCACAAAGTCAAGATTGACACTCCCATGTTGTCTTCGGAATGGAAGAGACCTGGTATGTTGAGACATTTTACAGTTGTTCGAAAGCTTGACGGAGCTATATTTCCGATGGGGTTCTCTAAAGAGGCTACCGATAGAAATTCTAAGGCTGGATATAATGTCTTAATCTCTGAAAGCAATGAAAGGGCTTTGTTAAATCGACTGATGATTGAGCTATACAAATTGGATATCGATGTACTGGTTGGACATAACATTTCAGGGTTTGACCTTGACGTTCTCCTCCATAGAGCTCAGGCTTGCAGAGTTCCAAGCAGCATGTGGTCCAAAATTGGTCGTCTTAAGCGGTCTGTAATGCCTAAGCTTGGAAAAGGAATTAACATTTTTGGGTCTGGGGCGAGTCTTGGAATCATGTCTTGCATTGCTGGTCGACTTTTATGTGACACATACTTGTGTTCCCGAGATTTATTGAAAGAGGTTAGTTACTCCCTGACGGAATTGTCTAAGACCCAGCTGAATAAGGATCGCAAGGAGATTACTCCTCATGATATTCCCAGAATGTTCCAAACATCAGAATCTCTCATGCAACTTATTGAGTTTGGTGAGACAGATGCATGGCTGTCTATGGAACTCATGTTTCATTTGAGTGTTCTTCCTCTAACACGGCAGCTGACTAATATCAGTGGTAATCTTTGGGGGAAAACTCTACAAGGTGCTAGGGCTCAAAGAGTGGAGTATCTGCTTCTTCACGCATTCCATGCTAAGAAATATATTGTGCCAGACAAAATTTCATCTCAAAATAAGGATAAAAGTTTGAAAAAAAGGACAAGCAATGGTATTGAGGAGAGAAACGTGAATCAACTTGACAAGGATGACATGAATCTCAATTATGATGCTTCCCACGATGATGTTGGAAAAGGAAAGAAGGGTCCTTCCTACGCAGGTGGGCTAGTCTTGGAGCCAAAAAAAGGTTTATATGATAAGTATATATTGCTTCTGGACTTCAATAGTCTTTATCCTTCTATAATACAGGAATATAATATTTGCTTCACTACAGTAAATATACCTTCAGATGGGGCTGTTCCTCGTCTTCCATCTACTAAAACAATGGGAGTTCTTCCGGAGCTGTTAAAAAATCTAGTTCAAAGAAGAAGAATGGTGAAGTCCTGGATGAAGAATGCATCTGGTCTTAAGGTGCGGCAACTAGACATTCAACAGCAGGCTCTAAAGCTCACTGCAAATAGTATGTATGGATGTCTGGGATTTTCTAATTCAAGGTTTTATGCAAAGCCACTTGCAGAGCTTATTACCCTACAAGGAAGGGAGATTCTGCAGAGTACTGTTGATCTTGTTCAGAATAATTTGAACTTGGAGGTAATATATGGTGATACAGATTCCATTATGATTTATAGTGGACTGGACGATATACCAAAAGCAAAAGCAATTGCGGGAAAAGTCATACAAGAGGCAAACAACGTTGATAGTTATTTTTTTGCTTCTTACACTACTTTACCTATTTTTGCCCTTATTTTAGTTTTGTTAAGCATTGAACAAAATATTCTTTTATGCATTTTTGCTGTTAACAAGAGATATAAGTGTTTGGAAATTGATCTTGATGGTTTATACAAGAGAATGTTGCTTCTAAAGAAAAAGAAGTATGCAGCTGTAAAGGTGCAGTTCAAGGATGGAATACCATATGAGGTTATTGAACGGAAGGGCCTTGATATAGTTCGCCGTGACTGGAGCTTACTATCAAAGGAATTAGGAGATTTCTGTTTAAGTCAAATATTGTCTGGAGGGTCATGTGAAGATGTTGTTGAATCAATTCACAACTCTCTTTTGAAGATACAAGAAGATATGAGGAACGGGCAAGTGCCGCTTGATAAATATATCATAACAAAGACAATGACTAAGCCACCTGAAGCCTACCCAGACGCGAGAAATCAACCCCATGTTCAAGTGGCACAAAGGTTGAAGCAAATGGGGTATTCTACTGGTTTTTCTGTCGGTGACACCATTCCTTACATAATCTGTCGTGAGCAGGAATCCACTTCTGATAGTTCTGCAGGAATTGCGCAACGTGCTCGTCATCCCGAGGAGTTGAAAAGAGAAGATGGGAAATGGATAATTGACATTGATTACTATCTGTCACAACAGATTCATCCAGTTGTCTCTCGCCTTTGCGCATCAATTCAGGGTACTAGTCCAGAACGCTTAGCTGACAGTTTGGGGCTGGACTCTTCCAAGTTTGACATTGAACTACACGAATCTTCTTTTTATTTATTCCACATCAAGTCAATTGAAGCCGGGAGCGATGCTTCTGCTTCAAACTTGTTTTCATTAGATGACGAGGAAAGATATCGAGGTTGTGAACCTCTGAAATTGTCATGCCCAAGCTGTTCAAGTACATTTGATTGCCCAACTATCTTTAGCTCAATTTGTACGTCAATTGGTGAAAAGACTATGTCTAATGTTGATGAATTGACCGCGAGTTTTTGGAGCAAATTGCAGTGTCCTAAATGCCCAGAAGATGGCAATGTGGGTAGAATCTCTCCTGGCATGCTTGCCAATCAGGTCAAAAGGCAAGCAGTGTGGTTCATTTCAATGTATTACAAAGGCGTAATGATGTGTGATGAAGAGACTTGCAAGTACATCACTCGCTCTCTCAATCTCCGTCTTATTGGTGATGCTGAGAAAGGAACCGTATGCCCGAATTATCCACACTGCAATGGTCGCCTTGTGAGAAAGTTCTCGGCTAAGGATCTATACAAGCAAGTTTCATATTTCTGCCTTGTATTGGATACTGTACGCTGCATAGAAAAGGTGGAAATCAGCACCAGAATGACATTAGAGAAAAAATTGGCCAAAATTCGACCAATGGTTGATTTAGCTGCATCTACCATTCAAAGTATTCGTGATCAGAATGCATATGGTTGGGTACAGTTGCAGGATCTTGCCGTCACAATTTGA 4845 40.95 MADEQPTIIGRRRSRGSEALARADALQRLKALRSGGRRSDNGGVQIKVENPIYDSVPEDEYDALVAKRREEVKGFIVDDDGLGYCDEGEEEDWSKTGLPLSSDDSEGEMERPKKKKVEKKESQPKKQSSSLAAAAALMGKQRLSSMFTSSIFKKSGRDDKSKVLVCDTLVDDVIAEFAPDEEDREKRRRGQMNSMQISKNLVPIAGVKSNKPCVRTVNPAFSHEVSKAVDIGEFECSKINTNGNSDLVSVQGDVEVKRNGVNEFKEDKDFSSKFSEDTFGHVHVSPTKESVVEEQDPKMIEIKAEQVLKDGAYTLNANIREENNPELSAIVGWQAVRSQGNCAVDGIAEINNSTCSEEKCELDLDSNSVMPFYIVDAYEELYGANSGNVYLFGKVKSGGMHHSCCVVVKNMQRCAYAIPKHFFVHSDEMIKLQKDVEESRLSPADLRTKLQEATAGLKKEVSKHLLDLNISSFSMTPVKRKYAFERHDRPSGENYVLKINYPFKDIGKRAYNYINIHKDNPLPSDLKGESFSALLGTHCSALELFLVKRKIKGPSWLSVSKFSTCPTPQRVSWCKFEVTVDSPKDICISSNNTMEIPPVVVAAINLKTIINEKQNANEIVSASVICCHKVKIDTPMLSSEWKRPGMLRHFTVVRKLDGAIFPMGFSKEATDRNSKAGYNVLISESNERALLNRLMIELYKLDIDVLVGHNISGFDLDVLLHRAQACRVPSSMWSKIGRLKRSVMPKLGKGINIFGSGASLGIMSCIAGRLLCDTYLCSRDLLKEVSYSLTELSKTQLNKDRKEITPHDIPRMFQTSESLMQLIEFGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDKISSQNKDKSLKKRTSNGIEERNVNQLDKDDMNLNYDASHDDVGKGKKGPSYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVNIPSDGAVPRLPSTKTMGVLPELLKNLVQRRRMVKSWMKNASGLKVRQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIPKAKAIAGKVIQEANNVDSYFFASYTTLPIFALILVLLSIEQNILLCIFAVNKRYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGIPYEVIERKGLDIVRRDWSLLSKELGDFCLSQILSGGSCEDVVESIHNSLLKIQEDMRNGQVPLDKYIITKTMTKPPEAYPDARNQPHVQVAQRLKQMGYSTGFSVGDTIPYIICREQESTSDSSAGIAQRARHPEELKREDGKWIIDIDYYLSQQIHPVVSRLCASIQGTSPERLADSLGLDSSKFDIELHESSFYLFHIKSIEAGSDASASNLFSLDDEERYRGCEPLKLSCPSCSSTFDCPTIFSSICTSIGEKTMSNVDELTASFWSKLQCPKCPEDGNVGRISPGMLANQVKRQAVWFISMYYKGVMMCDEETCKYITRSLNLRLIGDAEKGTVCPNYPHCNGRLVRKFSAKDLYKQVSYFCLVLDTVRCIEKVEISTRMTLEKKLAKIRPMVDLAASTIQSIRDQNAYGWVQLQDLAVTI 1614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14777519 14789146 + BLOR13962 Blo04g01050 60078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g01050 1614 Gene3D Helix hairpin bin 994 1045 - -
Blo04g01050 1614 Pfam DNA polymerase family B, exonuclease domain 401 791 IPR006133 -
Blo04g01050 1614 SUPERFAMILY Ribonuclease H-like 370 885 IPR012337 -
Blo04g01050 1614 CDD DNA_polB_alpha_exo 597 848 - -
Blo04g01050 1614 CDD POLBc_alpha 931 1371 IPR045846 GO:0003887|GO:1902975
Blo04g01050 1614 Pfam DNA polymerase alpha subunit p180 N terminal 26 93 IPR024647 -
Blo04g01050 1614 MobiDBLite consensus disorder prediction 1 20 - -
Blo04g01050 1614 Gene3D - 412 552 - -
Blo04g01050 1614 SUPERFAMILY DNA/RNA polymerases 881 1370 IPR043502 -
Blo04g01050 1614 Pfam DNA polymerase family B 856 1117 IPR006134 GO:0000166|GO:0003677
Blo04g01050 1614 Pfam DNA polymerase family B 1152 1355 IPR006134 GO:0000166|GO:0003677
Blo04g01050 1614 ProSitePatterns DNA polymerase family B signature. 1086 1094 IPR017964 GO:0000166|GO:0003676
Blo04g01050 1614 MobiDBLite consensus disorder prediction 104 125 - -
Blo04g01050 1614 Gene3D Palm domain of DNA polymerase 925 1186 IPR023211 -
Blo04g01050 1614 Pfam DNA Polymerase alpha zinc finger 1406 1610 IPR015088 GO:0003887|GO:0006260
Blo04g01050 1614 Gene3D - 597 913 IPR036397 GO:0003676
Blo04g01050 1614 TIGRFAM pol2: DNA polymerase (pol2) 51 1117 - -
Blo04g01050 1614 Gene3D DNA Polymerase alpha, zinc finger 1405 1599 IPR038256 -
Blo04g01050 1614 PRINTS DNA-directed DNA-polymerase family B signature 955 968 IPR006172 GO:0000166|GO:0003676|GO:0003887
Blo04g01050 1614 PRINTS DNA-directed DNA-polymerase family B signature 1084 1092 IPR006172 GO:0000166|GO:0003676|GO:0003887
Blo04g01050 1614 PRINTS DNA-directed DNA-polymerase family B signature 1031 1043 IPR006172 GO:0000166|GO:0003676|GO:0003887
Blo04g01050 1614 SMART polmehr3 597 1098 IPR006172 GO:0000166|GO:0003676|GO:0003887
Blo04g01050 1614 MobiDBLite consensus disorder prediction 1 19 - -
Blo04g01050 1614 Gene3D - 372 585 - -
Blo04g01050 1614 Gene3D - 1199 1382 IPR042087 -
Blo04g01050 1614 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 1151 1613 - -
Blo04g01050 1614 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 14 1117 - -
Blo04g01050 1614 MobiDBLite consensus disorder prediction 82 133 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g01050 Blo-Chr4:14777519 Blo05g00533 Blo-Chr5:10102751 5.95E-38 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g01050 K02320 - jre:109009092 2207.18