Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g01054 ATGTGGGATCTGAATGACTCGCCCAATCAGAAAAAAGACACTGAATCCGACGGTTGTTGTTCCCCCAAGACTTCGATCGACGGGGACGACGACAAGGGGAAACGGGTCGGATACTTTTCGAATTCAAGTTCTTCTGCAGTTGTGATCGAAGACGGATCCGACGAAGACTACGGCAATAACGAAGCGGTTGCCGAGAAGCTTAGCCGCGGAAGCAAGGTATTTGGGTGTTCAACACCTCAGTACTACATGGAAACGGATGACCCAGTGACCAGGCAGTTTTTCCCGGTGGAAGACTCCGAGGTCGGCGCTTCTCCGGAAGGAGGTGGCAATGGCGGTGCTTCGTTCCCTCGGGCTCGCTGGGTGGGGGTGAAATTCTGTCAGAGGGAACCTCTCGAAGATGCTAGATTGTCATCTGAGACGTCGCTGCCGATGAAAAAGAGCCGCCGAGGGCCGAGGTCTCGCAGCTCTCAGTATCGTGGCGTCACGTTCTACCGAAGAACCGGCCGATGGGAATCCCATATCTGGTTACTGCTCGGTAAGCACTTCCCTCTCTTCTTCCTTTTCCTCAAACTCTACTTTTCGACACAAACTCATCTCCAAATTTCTTGCAGGGCATACGATAGAGCAGCCATTAAATTCCGAGGAACAGAAGCTGACATAAATTTCAGCATCTATGACTATGAAGAAGACTTGAAACAAATGAGGAACTTAACGAAGGAAGAATTTGTGCATGTTCTTCGCCGACAAAGCACTGGGTTTCCGAGAGGAAGCTCCAAATACAGAGGCGTAACCCTACACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAGTTTCTTGGCAAAAAGTACGTTTATTTGGGCTTGTTCGATACCGAGATTGAAGCTGCAAAGGCTTATGATAAAGCAGCCATTAAATGTAATGGTAAAGACGCTGTCACCAACTTTGATCCAAGCATATACGGGGCAGAACTCAATGGAAAAGAATCGTCGATTAATGGAGTGGAGCACAATCTTGATTTGAGTTTAGGGAATTCAAGCTCGAATCCAAGCAGCTTGCCCCCAGTGAATAATGGCAGAAGCTCTGCACATTTATCTGTAACTTTTCCATTTAAATCAGATTGGCAAAATCAAGGATTTAGACCACAGGTTTCTACTTAG 1158 47.93 MWDLNDSPNQKKDTESDGCCSPKTSIDGDDDKGKRVGYFSNSSSSAVVIEDGSDEDYGNNEAVAEKLSRGSKVFGCSTPQYYMETDDPVTRQFFPVEDSEVGASPEGGGNGGASFPRARWVGVKFCQREPLEDARLSSETSLPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWLLLGKHFPLFFLFLKLYFSTQTHLQISCRAYDRAAIKFRGTEADINFSIYDYEEDLKQMRNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAAKAYDKAAIKCNGKDAVTNFDPSIYGAELNGKESSINGVEHNLDLSLGNSSSNPSSLPPVNNGRSSAHLSVTFPFKSDWQNQGFRPQVST 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14959646 14961682 + BLOR13966 Blo04g01054 60082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g01054 385 CDD AP2 258 318 IPR001471 GO:0003700|GO:0006355
Blo04g01054 385 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 379 - -
Blo04g01054 385 MobiDBLite consensus disorder prediction 1 37 - -
Blo04g01054 385 Gene3D AP2/ERF domain 258 317 IPR036955 GO:0003700|GO:0006355
Blo04g01054 385 Gene3D AP2/ERF domain 156 225 IPR036955 GO:0003700|GO:0006355
Blo04g01054 385 MobiDBLite consensus disorder prediction 136 155 - -
Blo04g01054 385 SUPERFAMILY DNA-binding domain 258 318 IPR016177 GO:0003677
Blo04g01054 385 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 379 - -
Blo04g01054 385 SMART rav1_2 259 322 IPR001471 GO:0003700|GO:0006355
Blo04g01054 385 SMART rav1_2 157 229 IPR001471 GO:0003700|GO:0006355
Blo04g01054 385 MobiDBLite consensus disorder prediction 1 36 - -
Blo04g01054 385 ProSiteProfiles AP2/ERF domain profile. 157 223 IPR001471 GO:0003700|GO:0006355
Blo04g01054 385 Pfam AP2 domain 258 307 IPR001471 GO:0003700|GO:0006355
Blo04g01054 385 ProSiteProfiles AP2/ERF domain profile. 259 316 IPR001471 GO:0003700|GO:0006355
Blo04g01054 385 PRINTS Ethylene responsive element binding protein signature 260 271 IPR001471 GO:0003700|GO:0006355
Blo04g01054 385 PRINTS Ethylene responsive element binding protein signature 298 318 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g01054 Blo-Chr4:14959646 Blo16g00405 Blo-Chr16:14951967 0 dispersed
Blo04g01054 Blo-Chr4:14959646 Blo13g01099 Blo-Chr13:33141228 2.28E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12338 PF00847 AP2 3.70E-10 CL0081 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g01054 K09284 - rcu:8260999 457.218