Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g01061 ATGGACGGGGAGGACGAAGTGAGAGAGGAGACGAAGAAGAAGAGATCGAAGGATAATCAGAGGTCGTACAAAGGGATTCGAATGAGAAAGTGGGGAAAATGGGTGGCTGAGATTCGAGAACCGAATAAACGCTCCAGAATTTGGCTGGGCTCTTACTCTTCGCCGGTGGCTGCGGCTAGGGCTTACGACACTGCCGTTTTTCATTTAAGGGGCCCATCAGCGCGGCTTAACTTCCCGGAGCTTTTGGCGGCGGAAGAATGGGGGATTCCCGCCGGAGACGATATGTCGGCCGCTACTATAAGGAAGAAAGCCGCCGAGGTCGGCGCGAGAGTGGATGCCATCGAGAGTTCTCATCAATACGACCATTCTTCCTCTGCCATGGTGACTCCGTCGTTGAAGGGCGGGGGTGGGTTTTCGGATCGGGTCGACTTGAACAAGTTGCCGGAGCTGGAAGAGTCGGAGGGGGAGACTGGGTAG 477 55.56 MDGEDEVREETKKKRSKDNQRSYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDTAVFHLRGPSARLNFPELLAAEEWGIPAGDDMSAATIRKKAAEVGARVDAIESSHQYDHSSSAMVTPSLKGGGGFSDRVDLNKLPELEESEGETG 158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15228463 15228939 - BLOR13973 Blo04g01061 60089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g01061 158 MobiDBLite consensus disorder prediction 1 24 - -
Blo04g01061 158 Pfam AP2 domain 23 71 IPR001471 GO:0003700|GO:0006355
Blo04g01061 158 MobiDBLite consensus disorder prediction 116 158 - -
Blo04g01061 158 SUPERFAMILY DNA-binding domain 23 80 IPR016177 GO:0003677
Blo04g01061 158 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 8 154 - -
Blo04g01061 158 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Blo04g01061 158 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Blo04g01061 158 MobiDBLite consensus disorder prediction 144 158 - -
Blo04g01061 158 CDD AP2 23 81 IPR001471 GO:0003700|GO:0006355
Blo04g01061 158 PRINTS Ethylene responsive element binding protein signature 61 81 IPR001471 GO:0003700|GO:0006355
Blo04g01061 158 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Blo04g01061 158 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 8 154 - -
Blo04g01061 158 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo04g01061 Blo16g00400 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g01061 Blo-Chr4:15228463 Blo18g00657 Blo-Chr18:12325563 1.91E-55 dispersed
Blo16g00951 Blo-Chr16:37764776 Blo04g01061 Blo-Chr4:15228463 8.22E-20 dispersed
Blo16g00400 Blo-Chr16:14566956 Blo04g01061 Blo-Chr4:15228463 2.02E-95 transposed
Blo01g01521 Blo-Chr1:54799376 Blo04g01061 Blo-Chr4:15228463 6.91E-50 wgd
Blo12g00962 Blo-Chr12:27752920 Blo04g01061 Blo-Chr4:15228463 3.35E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12340 PF00847 AP2 7.60E-11 CL0081 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g01061 K09286 - csv:101214481 213.001