Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g01074 ATGGAGATGTCATTGCCGAAGCAACTTTCGAGCCACATCTGTACATTTTTTGATTTGTTATCCAGGAACAACATAAACTCAGAACCTATTCTGAGGCATTACCAAGAAACTGAAAGGTTAATGAAGCAGTTGAACTCAATAATAAAAGCACTTGTTGATCTTGAAATACAGTTTGATGAGGAACTTCATAAGCCATTTGAAGAAATAATTCATTTTGTGGATGTATTGATCGAGCATTTCGAAGAGTGGCGACCATTTTCAAGCAAAGTATTCTTTGTGCTGCAAAGTGAAGACCTGATGTCAGAGATCAAAAAACATGTCCTGGTTATTATCCAACTTCTGCAGGCTTCAAACGAACAATTGAATGCGGCATTGACGTTAAGTGAGCAATGGGTTGAAAACATTGAGCGCAAGGAATCTGAACAAATGTCAATTATCATCAACGATGCCCTCGGATATCAAGTAGAGGGCAGTCGGCCCAGCTCAGACGTGTTGGTGAAAATAGGAGAGTGCCTTAACTTAAGGACCAACCAGGAGATTCTGATTGAGGCAGTAGCACTACAGAAGTTGAAAGAGAATGCTGAACAAGCTGAACAGAACGACGAAGCTGAGCATATTGATCAAATTATTGCTCTTCTGATGTCCATGCATGAGCTGCTAATTGCAATTAGGAAGTCTCAATTTCATAGTCCTGTCGAAATACCTGCCGATTTGTTCTGTCCCCTCTCTCTGGAACTAATGACAGATCCAGTGATTGTGACATCTGGACAAACGTACGAACAGAGTTTTATCAAAAACTGGATTGACCTCGGCCTCAATGTTTGTCCAAAGACAAGACAGAAATTGGTCAACACTAATTTGTATCCGAATTTTACCGTCAAGGCACTTATCACAAACTGGTGTGAAATAAACAATGTGAAGCGGCCTGATTTCACTTGTACAGTGAGCTTAAACCAGACGTTGGTTGAACTCAGTGAGCTTAGACCTGATAAGAAGTTAAACTCATCCAATGAAATCGACGGGAAGCAATCTTCTCCTACTTATGCCAGTCCTACCATGGAAGGTTATCTGGTGGCCAACTCTAGTAATGACCCGGATATGGAAGAACAACAAGGAGCTGACTCAAGTAGAAGTGATTTTCCCATTATGGAGGAAGAACCAATTCAAAATATCAGCAGAACTGCAACTGACCAGAATGGAATTTCTAATCCTAACTTTTCTCCCACAACACCAGATGATGCTGATGAAGCTTCTTGGGTCTCGACTACTTTGAGTAAGTACAAAGGCATTGAGTTTGAGGAGGTTAAACCAGAGTCGCCACTTAGATTGATGGATGGACCATATCGAGATCAAACTTCAAGCAGGCAGTTTGTGAGTTTTATCCCTCGAATAGTTCATTCATCTGGGATTAGAACCAGCAATGATCTTTACGAGATTGAATCCCAAGTTAAGACTCTAGTTCAGGACTTGAAGAGCACTTCATCCGATACTATACGAGCAGCTACGGAGCAATTACGGCTGCTTGCAAAAGTCGACGTGGAAAATCGGATTCTGATTGCAACTTGTGGAGCCATTGGCCTTTTAGTCAATTTGCTCCACTCTCCTGATGCAAAGATCCAGGAATATTCTGTCACTGCCCTTCTTAACTTATCGATCAATGATAATAACAAAAGTATTATTTCTGCGGCTAATGCCATTGAACCGCTGATCCATGTCCTCAAAACTGGCAGCTCCGAGGCAAAGGAGAACTCAGCTGCTACCCTTTATAGTATTTCAGTGGTAGGAGATAATAAGCTCAGGATTGGAAGGTCTGGTGCTATTGGACCATTGATTGAATTGTTGGAGAAGGGCAGTCCAAGGGGGAAGAAAGATGCAGCCACAGCCCTGTATAATTTGTCGATATTGAACGAAAACAAGGTCAAGATAGTTCAAGCTGGAGGTGTGAAACATCTGGTGGACTTGATGGACCCAGCATATGGTATCATGGACAAGGCCGTATCGGCATTGGCAAATTTGGCGACAATTTCGGATGGTAAGATGGAGATTGGTCAACACCCAGGTGGCATTCCGGCATTGGTCCAGGTAGTAGAGTTGGGTTCTGCTCGAGGAAAAGAAAATGCAGCCGTTGCCCTTTTGCATCTTTGCTCTGCTAGTAATAAATTTTGTTGGATGGTGCTACAAGAAGGAGCAGTTCCTCCGTTGGTGGTGCTGTCACAATCCGGCACCCCGAGAGCCAGAGAAAAGGCGCAGTCGCTTCTGAAATGTCTCATAACTCTGCGACATGGCAAAGCTGGAAGAGTCTGA 2304 42.97 MEMSLPKQLSSHICTFFDLLSRNNINSEPILRHYQETERLMKQLNSIIKALVDLEIQFDEELHKPFEEIIHFVDVLIEHFEEWRPFSSKVFFVLQSEDLMSEIKKHVLVIIQLLQASNEQLNAALTLSEQWVENIERKESEQMSIIINDALGYQVEGSRPSSDVLVKIGECLNLRTNQEILIEAVALQKLKENAEQAEQNDEAEHIDQIIALLMSMHELLIAIRKSQFHSPVEIPADLFCPLSLELMTDPVIVTSGQTYEQSFIKNWIDLGLNVCPKTRQKLVNTNLYPNFTVKALITNWCEINNVKRPDFTCTVSLNQTLVELSELRPDKKLNSSNEIDGKQSSPTYASPTMEGYLVANSSNDPDMEEQQGADSSRSDFPIMEEEPIQNISRTATDQNGISNPNFSPTTPDDADEASWVSTTLSKYKGIEFEEVKPESPLRLMDGPYRDQTSSRQFVSFIPRIVHSSGIRTSNDLYEIESQVKTLVQDLKSTSSDTIRAATEQLRLLAKVDVENRILIATCGAIGLLVNLLHSPDAKIQEYSVTALLNLSINDNNKSIISAANAIEPLIHVLKTGSSEAKENSAATLYSISVVGDNKLRIGRSGAIGPLIELLEKGSPRGKKDAATALYNLSILNENKVKIVQAGGVKHLVDLMDPAYGIMDKAVSALANLATISDGKMEIGQHPGGIPALVQVVELGSARGKENAAVALLHLCSASNKFCWMVLQEGAVPPLVVLSQSGTPRAREKAQSLLKCLITLRHGKAGRV 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15620449 15623738 + BLOR13986 Blo04g01074 60102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g01074 767 SMART Ubox_2 237 300 IPR003613 GO:0004842|GO:0016567
Blo04g01074 767 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 605 647 IPR000225 GO:0005515
Blo04g01074 767 CDD RING-Ubox_PUB 240 280 IPR045210 -
Blo04g01074 767 Pfam Armadillo/beta-catenin-like repeat 513 551 IPR000225 GO:0005515
Blo04g01074 767 Pfam Armadillo/beta-catenin-like repeat 597 633 IPR000225 GO:0005515
Blo04g01074 767 Pfam U-box domain 234 304 IPR003613 GO:0004842|GO:0016567
Blo04g01074 767 PANTHER U BOX DOMAIN-CONTAINING 13 757 - -
Blo04g01074 767 SMART arm_5 675 716 IPR000225 GO:0005515
Blo04g01074 767 SMART arm_5 512 552 IPR000225 GO:0005515
Blo04g01074 767 SMART arm_5 471 510 IPR000225 GO:0005515
Blo04g01074 767 SMART arm_5 553 593 IPR000225 GO:0005515
Blo04g01074 767 SMART arm_5 594 634 IPR000225 GO:0005515
Blo04g01074 767 SMART arm_5 635 674 IPR000225 GO:0005515
Blo04g01074 767 ProSiteProfiles U-box domain profile. 233 307 IPR003613 GO:0004842|GO:0016567
Blo04g01074 767 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 646 687 IPR000225 GO:0005515
Blo04g01074 767 MobiDBLite consensus disorder prediction 332 351 - -
Blo04g01074 767 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 523 565 IPR000225 GO:0005515
Blo04g01074 767 SUPERFAMILY ARM repeat 482 757 IPR016024 -
Blo04g01074 767 Gene3D - 448 764 IPR011989 -
Blo04g01074 767 MobiDBLite consensus disorder prediction 356 416 - -
Blo04g01074 767 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 233 308 IPR013083 -
Blo04g01074 767 Coils Coil 34 54 - -
Blo04g01074 767 SUPERFAMILY RING/U-box 231 310 - -
Blo04g01074 767 MobiDBLite consensus disorder prediction 356 377 - -
Blo04g01074 767 MobiDBLite consensus disorder prediction 389 416 - -
Blo04g01074 767 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 757 - -
Blo04g01074 767 Coils Coil 177 207 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00269 Blo-Chr1:3421716 Blo04g01074 Blo-Chr4:15620449 1.58E-09 dispersed
Blo04g01074 Blo-Chr4:15620449 Blo03g01237 Blo-Chr3:38604917 6.72E-24 dispersed
Blo06g01160 Blo-Chr6:35002246 Blo04g01074 Blo-Chr4:15620449 8.09E-18 dispersed
Blo12g00191 Blo-Chr12:12592799 Blo04g01074 Blo-Chr4:15620449 4.46E-11 dispersed
Blo05g00407 Blo-Chr5:5112545 Blo04g01074 Blo-Chr4:15620449 1.20E-149 transposed
Blo10g00672 Blo-Chr10:21598819 Blo04g01074 Blo-Chr4:15620449 5.72E-10 transposed
Blo12g01122 Blo-Chr12:28859392 Blo04g01074 Blo-Chr4:15620449 1.86E-29 transposed
Blo17g00885 Blo-Chr17:29287671 Blo04g01074 Blo-Chr4:15620449 5.87E-12 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g01074 - - pper:18773704 758.829