Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g01095 ATGCTTATGTTTCAGCCGTCGAAGAGAGATGTGGTTGTTGGGTTTGACGGTGGCGGAGCTGGGCATGTTCTAGATCTGGACGCGGCCGTAAAAGACGGAGTATTGGGCGGCATTGACGGTGGGGTTGTTGGAACCGGAGTTGGAGAGAAATTGGATCTGAAGAAGATGATCGAAGATCTAAACTTGTCTGAGGTGCCGTCAGTGTTCATCTGCCCCATTTCTCTCGAACCAATGCAGGAGCCAGTGACCCTCTGCACAGGCCAAACGTACGAGAGGTCCAATATTCTCAAATGGTTCAATCTGGGGCACTACACCTGCCCTACGACTATGCAGGAGCTTTGGGACGATTCTGTTATACCCAACACCACACTTTACCATCTAATCTACAGTTGGTTTACCCAGAAGTATTTTCTCATGAAGAAGAGGTCAGAAGATGTTCAAGGAAGAACGTCAGAACTTCTCAAAACTCTCAAAAAAGTAAAGGGTCAGGCCAGAGTTCAAGCCCTCAAGGAGGTTCGACAAATCGTGGCTGTTCATACCACGGTTAGGAAAACAGTGATCGAGGAAGGAGGGGTTTCATTAATTACATCCCTATTAGGCCCCTTTACGTCTCACGCAGTCGGCTCTGAAGCCATTGGCATTCTTGTGAATTTGGCACTCGATTCTGACTCAAAAGTAAATTTGATGCAGCCTGCGAAATTTTCATTGGTGGTGGATATTCTAAATGAGGGCTCAATCGGAACTAAGACCAATTGTACGATGTTGATCGAGATGCTGATGGAAGAGAAGGATTTCCAGTCGGAAATCGTTTCAAGCCACAGCCTTTTAGTTGGACTAATGAGACTGATCAAAGATAAAAGGCATCCAAACGGAGTCTTTCAAGGCCTCCGGCTCTTAAAAACGATATGCTTTCATTCAGAAGTGAGAAATTTGGTTGTAAGCATTGGGGTGGTTCGACAATTGGTTGAGATGTTACCTTCTCTGGGTCCCGATAGCTTAGAGCTTGTACTTGTCATATTGGAAACTTTGTCATCTCTACCAGAAGGAGGATTAGCTTTGAAAGAGTGCTCATATACAATACCGTATATGGTGAAGCTAATTATGAGAGTTTCAGAGAGCTGCACAAAATATGCGCTGTCGATCATATCGGCTGTGTGTAAACTTGCCCCTGATGAATGTTCTTCGGTTGCCGTTGATGAAGGACTTGCTGCAAAGCTCCTCCTAGTTATTCAAAGTGGGTGTGGGCCAGCTCTGAAGCAGCAATCTGCAGAGCTGTTGAAGTTGTGTAGTCTGAATTACACAGATACGACATTTATTTCCAAGTGCAAGCTTTCAAGAACTATCCAATGA 1350 45.11 MLMFQPSKRDVVVGFDGGGAGHVLDLDAAVKDGVLGGIDGGVVGTGVGEKLDLKKMIEDLNLSEVPSVFICPISLEPMQEPVTLCTGQTYERSNILKWFNLGHYTCPTTMQELWDDSVIPNTTLYHLIYSWFTQKYFLMKKRSEDVQGRTSELLKTLKKVKGQARVQALKEVRQIVAVHTTVRKTVIEEGGVSLITSLLGPFTSHAVGSEAIGILVNLALDSDSKVNLMQPAKFSLVVDILNEGSIGTKTNCTMLIEMLMEEKDFQSEIVSSHSLLVGLMRLIKDKRHPNGVFQGLRLLKTICFHSEVRNLVVSIGVVRQLVEMLPSLGPDSLELVLVILETLSSLPEGGLALKECSYTIPYMVKLIMRVSESCTKYALSIISAVCKLAPDECSSVAVDEGLAAKLLLVIQSGCGPALKQQSAELLKLCSLNYTDTTFISKCKLSRTIQ 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16723248 16724597 + BLOR14007 Blo04g01095 60123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g01095 449 Pfam U-box domain 65 135 IPR003613 GO:0004842|GO:0016567
Blo04g01095 449 Gene3D - 139 444 IPR011989 -
Blo04g01095 449 SMART Ubox_2 68 131 IPR003613 GO:0004842|GO:0016567
Blo04g01095 449 CDD RING-Ubox_PUB 69 111 IPR045210 -
Blo04g01095 449 ProSiteProfiles U-box domain profile. 64 138 IPR003613 GO:0004842|GO:0016567
Blo04g01095 449 PANTHER WDSAM1 PROTEIN 38 448 IPR045185 GO:0061630
Blo04g01095 449 SUPERFAMILY RING/U-box 60 135 - -
Blo04g01095 449 SUPERFAMILY ARM repeat 237 434 IPR016024 -
Blo04g01095 449 SUPERFAMILY ARM repeat 153 270 IPR016024 -
Blo04g01095 449 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 38 448 - -
Blo04g01095 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 138 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g01095 Blo-Chr4:16723248 Blo14g00246 Blo-Chr14:2197355 9.27E-35 dispersed
Blo05g00558 Blo-Chr5:12256851 Blo04g01095 Blo-Chr4:16723248 1.63E-37 transposed
Blo16g00339 Blo-Chr16:9754998 Blo04g01095 Blo-Chr4:16723248 0 wgd
Blo17g00893 Blo-Chr17:29467071 Blo04g01095 Blo-Chr4:16723248 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g01095 - - jre:108985646 698.738