Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g01103 ATGGGTTTTGATAACCATCTTTGCAACATGGGTCTTCTTCTAGGCTTAGGATTCGCTTCTACCCATGATTCTCAATCAAACACTGTCAATCCGTTTTTGAAGAAACCTACCTTCGATCACGTCGGAGGAGGTTTCGAGCCGTCTTTAACTTTGGGTCTTTCTGGCGAGACTCATCGAATCGGAAGCCTAAAGATTGATATAAACAAAGGTTGTGTGGAGGGAGATGATCTGATTCGGCAAGCTTCGTCGCAAAGTGCTGTTTCTTCTTTCTCCAGTGGTAGGGTGAAGAGAGAGAGAGAGCATAGCACTGAGGAGGTTGAGGTGGAGAAAGTCTCGTCTAGAGTAAGCGATGAAGATGAAGATGGTTCTAATGCCAGAAAGAAACTTAGGCTAACGAAAGACCAGTCTGCCCTCCTGGAAGAAAGCTTCAAACTCAACAGCACTCTCAACCCCAAGCAAAAGCAAGCTTTAGCAAGGCAGCTAAGTCTCCGACCCAGACAAGTTGAAGTGTGGTTTCAGAACAGACGAGCAAGGACAAAGCTCAAGCAAACAGAAGTAGACTGTGAGTTTCTGAAGAAATGCTGCGAAACCCTGACAGATGAAAACAGAAGGCTACAGAAAGAGCTTCAGGAGCTAAAGGCAGTAAAAATGGCTCAACCCTTTTACATGCACATGCCGGCAGCAACTCTCGCGATCTGTCCTTCTTGTGAGAGGATCAATGATGGAGTTTCCAAGGTTCCATATTCCATGGCTTCGAAGCCTGCCTTCTACAATCTCTTTACTAATCCTTCTGCTGCCTGTTAG 804 45.77 MGFDNHLCNMGLLLGLGFASTHDSQSNTVNPFLKKPTFDHVGGGFEPSLTLGLSGETHRIGSLKIDINKGCVEGDDLIRQASSQSAVSSFSSGRVKREREHSTEEVEVEKVSSRVSDEDEDGSNARKKLRLTKDQSALLEESFKLNSTLNPKQKQALARQLSLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKAVKMAQPFYMHMPAATLAICPSCERINDGVSKVPYSMASKPAFYNLFTNPSAAC 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17324118 17325131 + BLOR14015 Blo04g01103 60131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g01103 267 ProSiteProfiles 'Homeobox' domain profile. 122 182 IPR001356 GO:0003677
Blo04g01103 267 MobiDBLite consensus disorder prediction 93 129 - -
Blo04g01103 267 Pfam Homeodomain 126 180 IPR001356 GO:0003677
Blo04g01103 267 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22-LIKE 7 267 - -
Blo04g01103 267 CDD homeodomain 126 183 IPR001356 GO:0003677
Blo04g01103 267 ProSitePatterns 'Homeobox' domain signature. 157 180 IPR017970 GO:0000981|GO:0006355
Blo04g01103 267 SMART halz 182 225 IPR003106 GO:0006355|GO:0043565
Blo04g01103 267 Coils Coil 188 218 - -
Blo04g01103 267 MobiDBLite consensus disorder prediction 89 129 - -
Blo04g01103 267 SMART HOX_1 124 186 IPR001356 GO:0003677
Blo04g01103 267 SUPERFAMILY Homeodomain-like 115 183 IPR009057 -
Blo04g01103 267 Pfam Homeobox associated leucine zipper 182 215 IPR003106 GO:0006355|GO:0043565
Blo04g01103 267 Gene3D - 119 187 - -
Blo04g01103 267 PANTHER - 7 267 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g01103 Blo-Chr4:17324118 Blo06g00622 Blo-Chr6:29128151 1.80E-60 dispersed
Blo01g01480 Blo-Chr1:54162228 Blo04g01103 Blo-Chr4:17324118 6.80E-61 wgd
Blo12g01004 Blo-Chr12:28027205 Blo04g01103 Blo-Chr4:17324118 9.33E-67 wgd
Blo04g01103 Blo-Chr4:17324118 Blo06g00035 Blo-Chr6:723435 3.78E-106 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12346 PF00046 Homeodomain 5.10E-16 CL0123 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g01103 K09338 - tcc:18611354 345.51