Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g01118 ATGGAGAAAAAATACAGCTTTTGGCAATGGGGTTTGATGCTTTGCTTCTTATCAATGGCTGCCTTTGTTGTACTCCGGCTTCCGGAATTCTCCACGAAGACAGCAGTCAGGAGATCTCTGAGGAACACAAACAGCAGCGGCGCCGTCGTATTTCCTGCAGTGACGCTTCGAAGATTATCTCACGGCTATGTGGTGATGGATAATGGGCTTCTGCAAGTCACTTTATCAACTCCGAGCGGCCATGTCACCGGTGTAAAGCACAACGGGATCGACAACTTGCTTGAAGTTCATAATTCAGCCGACGATAGAGGATTAAGAGGAACAAACTTTAGTGTTGTAGTGCAAACTGAAGACCAGTTGGAGCTTTCATTCACACGAACATGGACAAATTCATCTAGTAATACCAATCTTCCTCTAAATGTAGACAAAAGGTACATATTGCTACGTGGGTCTTCTGGGTTTTATACGTACTCCATATTAGAGAGGCTACAAGGATGGCCAGCGATTGAGATGGATCAAATCCGAGCTGTTTATAAATCCCGGAAGGAAAAATTTCGCTACATGGCGGTAGCGGATGACATGCAGAGGATCATGCCGACGCAGCAGGATCGGGAGACCGGGGATAAGCTGGCTTATCCAGAGGCTGTTCTTTTAACCAACCCTGTGGATGAAGACGTGAGAGGAGAGGTGGATGATAAGTACATGTACTCGCTTGAGGATAAAGATAACAAAGTTCATGGCTGGATATGTGCGGACCCACCGACTGGAATCTGGATGATCACGCCCAGCGATGAGTTCCGCGTGGCGGGGCCTGTCAAGCAGGATCTTACCTCTCATGTCGGCCCTACCACCCTCTCTATGTTTGTGAGTACCCATTATGCCGGGAAGGACGTGGGGATGCACTTTGGTGAAGGGGAGCCATGGAAGAAGGTTTTCGGCCCGGTTTTCGTCTATCTCAACTCTCTTCCAGAAAAAGCAGACCCTCTTGATCTCTGGGACGACGCTAAACAGCAGATGGGGAAAGAAGTGGATAGCTGGCCTTACAGTTTTCCTGAGTCGGCGGAATTTCCTACTTCTGAACAACGAGGAAGAGTGAGCGGTCAATTGCTAGTCCGTGATCGATACATTAATGAATCCCTCATTTCTGCTGATGAAGCATATGTTGGACTGGCATTGCCTGGAGATTTGGGATCCTGGCAAAGAGAAAGCAAGGGTTATCAGTTCTGGACACGAGCGGACAAAGACGGCAACTTTTCCATTAAAAATGTTAGACCTGGGACATACAATTTGTACGCTTGGGTCCCTGGCTTTATCGGAGATTACAAATATGAGAATAATATAACAGTCGAACCCGGAAATGCAATAGGCTTAGACAACCTCGTGTTCGAGCCTCCTCGACAGGGTCCAACCTTCTGGGAAATTGGCATCCCCGACCGAACTGCAGCCGAGTTTTTCGTGCCAAACCCCTACCCGACTCTCATGAATCGACTGTACTACCAACCGAAAAACAATTTTAGGCAATATGGCTTGTGGGAACGTTATGCCGATTTGTATCCAACGGCCGATCTGGTCCACAACATCGGCGATAATTATAGAACCGACTGGTTCTTCGCTCATGTTACCAGAAAAAACGAAAATGGAACTTACGACGCAACGACTTGGCAGATCGTATTTCAACTCGACACTTTGAACAAGTCTGGAACTTATACACTTCAATTGGCGTTAGCCTCTGCCACAGAATCTGAAGTGCAGGTACGGTGGAACGACCCGGCTGCAGAGCCTCACTTTTCAACCGGATTAATAGGGAAGGATAATGCGATTGCGAGACATGGAATTCACGGGCTGTACTGGTTGTACACTGTAAATGTAGGCGGCCAAATGCTTGCTTTAGGGAAGAACACAATCTACCTGACTCAATCCAGACATCAAACTCCTTTCCAAGGAGTAATGTATGACTACATTCGATTTGAAGGGCCGCCTACTTGA 1986 47.38 MEKKYSFWQWGLMLCFLSMAAFVVLRLPEFSTKTAVRRSLRNTNSSGAVVFPAVTLRRLSHGYVVMDNGLLQVTLSTPSGHVTGVKHNGIDNLLEVHNSADDRGLRGTNFSVVVQTEDQLELSFTRTWTNSSSNTNLPLNVDKRYILLRGSSGFYTYSILERLQGWPAIEMDQIRAVYKSRKEKFRYMAVADDMQRIMPTQQDRETGDKLAYPEAVLLTNPVDEDVRGEVDDKYMYSLEDKDNKVHGWICADPPTGIWMITPSDEFRVAGPVKQDLTSHVGPTTLSMFVSTHYAGKDVGMHFGEGEPWKKVFGPVFVYLNSLPEKADPLDLWDDAKQQMGKEVDSWPYSFPESAEFPTSEQRGRVSGQLLVRDRYINESLISADEAYVGLALPGDLGSWQRESKGYQFWTRADKDGNFSIKNVRPGTYNLYAWVPGFIGDYKYENNITVEPGNAIGLDNLVFEPPRQGPTFWEIGIPDRTAAEFFVPNPYPTLMNRLYYQPKNNFRQYGLWERYADLYPTADLVHNIGDNYRTDWFFAHVTRKNENGTYDATTWQIVFQLDTLNKSGTYTLQLALASATESEVQVRWNDPAAEPHFSTGLIGKDNAIARHGIHGLYWLYTVNVGGQMLALGKNTIYLTQSRHQTPFQGVMYDYIRFEGPPT 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17836789 17840645 + BLOR14030 Blo04g01118 60146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g01118 661 SUPERFAMILY Starch-binding domain-like 404 458 IPR013784 GO:0030246
Blo04g01118 661 Gene3D - 358 458 - -
Blo04g01118 661 CDD RGL4_N 63 321 - -
Blo04g01118 661 SUPERFAMILY Galactose-binding domain-like 468 657 IPR008979 -
Blo04g01118 661 Pfam Polysaccharide lyase family 4, domain III 470 655 IPR029411 -
Blo04g01118 661 SUPERFAMILY Galactose mutarotase-like 67 321 IPR011013 GO:0003824|GO:0005975|GO:0030246
Blo04g01118 661 Gene3D - 468 656 - -
Blo04g01118 661 Pfam Rhamnogalacturonate lyase family 42 230 IPR010325 -
Blo04g01118 661 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 53 660 - -
Blo04g01118 661 CDD RGL4_M 361 460 IPR029413 -
Blo04g01118 661 Pfam Polysaccharide lyase family 4, domain II 384 455 IPR029413 -
Blo04g01118 661 CDD RGL4_C 472 657 - -
Blo04g01118 661 Gene3D - 53 312 IPR014718 GO:0030246
Blo04g01118 661 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 53 660 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g01118 Blo-Chr4:17836789 Blo12g00739 Blo-Chr12:25750097 0 dispersed
Blo04g01118 Blo-Chr4:17836789 Blo17g00101 Blo-Chr17:848563 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g01118 K18195 - jre:109003646 852.432