Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g01123 ATGGCTCCGGCGACTAACTGGCTCTCATTCTCTTTATCTCCGGTTGAAATGCTGAGGTCTTCTCCTGAATCTCAATTTATGCCTTACGACACCTCTTCCACTGCTTCTCATCACTACTTGTTCGATAACATCTACAGAAATGGTTGGGGAAACCCCAAACAAGCTCAAGCTTCAGGTAGTATCGCCGATTCACCTAGTCTGACTAGCTTCATCGACCACCATAGCCAAAACCAAGGAGCACCGAAACTGGAAGACTTTCTCGGCGAGTCGTCGCTAATGGTTCGATATTCCGATAGCCAAACGGAAACTCAAGAATCATCTTTAACTCAAATCTATGACCATGGTTCGACCTACTTCAACGACCAGCAAGATCTCAAAGCTGTTACAGGGTTTCAAGCTTTCTCAGCCAACTCAGGTTCGGAAGTGGACGACTCGGCATCTATCGCTCGGAACCAGCTCGCTTGCGGCGAGTTCGCCGGCCATTGTATTGAATCGTCCGGCACCGAGTTAGCCTTCACTAATTGTTCTACCGGTGCACTGTCACTCGGGGTTGCTCAGAGCTTGGAAAGAGCGGTTGTTTCGATAGAATCTGATTGCTCGAAGAAGATTGTTGATACATTTGGCCAGCGAACTTCGATTTACAGAGGCGTTACTCGACACAGATGGACTGGTAGATACGAAGCTCATCTATGGGATAACAGTTGTCGAAGAGAAGGTCAGGCTAGGAAAGGGCGTCAAGTTCATTTGGTCTGCTTGCTGATGCTTACATTCTCTATCTTTTTGCATGAACTTGGTGTAATTTCCATGGCTGTCTTCCATCTTCCAACCTCCTCCTCTGCAGTTTACTTGGGTGGATATGATAAAGAAGATAACGCAGCGAGGGCTTATGATCTGGCAGCTTTGAAATACTGGGGTCCCACTGCCACTACCAACTTTTCTGTAGTTTCAAATTACACCAAAGAACTGGAGGAAATGAAACATGTGACAAAGCAAGAATTCATTGCTTCTCTTCGAAGGAAAAGTAGTGGGTTTTCAAGGGGAGCTTCGATTTATCGAGGCGTGACAAGGCATCATCAACAGGGAAGGTGGCAAGCGAGAATAGGCCGAGTTGCTGGAAATAAGGATCTGTACCTCGGGACATTTGCGACTGAAGAGGAAGCGGCTGAAGCTTACGATATTGCAGCTATAAAGTTCAGAGGTTTAAATGCAGTCACAAACTTTGAGATGGGACGATATGATGTGGAAGCAATTTCAAAGAGCAATCTCCCCATAGGAGGAGCTGCAAAAAGGTTAAAGCTCTCACTCGAATCGGAGCAAAAGTCATCCATTATGCACCATAATTTACAGTCATCGAGCATTAGCGGCGGAAACAACATAAGTTTCGGTGCAATTGAACCTGTTTCGGCTATTACATGTGGACTGCCGTTCGAAGCTTCTACTTCTCCAATGCTTTATCATCATAATGTCTTCCTCCACCTCCAACCCAATAGCATTTGCACTTCCAGTTTGGCTTCTAACCCTACCATGGCAGCTCCAACGAATGCGATGGCACCGCAGCCAGAATTTTTTGTTTGGCCTCACCAGTCCTATTGA 1593 46.2 MAPATNWLSFSLSPVEMLRSSPESQFMPYDTSSTASHHYLFDNIYRNGWGNPKQAQASGSIADSPSLTSFIDHHSQNQGAPKLEDFLGESSLMVRYSDSQTETQESSLTQIYDHGSTYFNDQQDLKAVTGFQAFSANSGSEVDDSASIARNQLACGEFAGHCIESSGTELAFTNCSTGALSLGVAQSLERAVVSIESDCSKKIVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVHLVCLLMLTFSIFLHELGVISMAVFHLPTSSSAVYLGGYDKEDNAARAYDLAALKYWGPTATTNFSVVSNYTKELEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGLNAVTNFEMGRYDVEAISKSNLPIGGAAKRLKLSLESEQKSSIMHHNLQSSSISGGNNISFGAIEPVSAITCGLPFEASTSPMLYHHNVFLHLQPNSICTSSLASNPTMAAPTNAMAPQPEFFVWPHQSY 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18182477 18186168 - BLOR14035 Blo04g01123 60151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g01123 530 CDD AP2 349 408 IPR001471 GO:0003700|GO:0006355
Blo04g01123 530 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 284 527 - -
Blo04g01123 530 CDD AP2 212 312 IPR001471 GO:0003700|GO:0006355
Blo04g01123 530 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 189 246 - -
Blo04g01123 530 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 5 185 - -
Blo04g01123 530 ProSiteProfiles AP2/ERF domain profile. 350 408 IPR001471 GO:0003700|GO:0006355
Blo04g01123 530 ProSiteProfiles AP2/ERF domain profile. 213 313 IPR001471 GO:0003700|GO:0006355
Blo04g01123 530 Pfam AP2 domain 350 400 IPR001471 GO:0003700|GO:0006355
Blo04g01123 530 SUPERFAMILY DNA-binding domain 277 314 IPR016177 GO:0003677
Blo04g01123 530 SMART rav1_2 350 414 IPR001471 GO:0003700|GO:0006355
Blo04g01123 530 SMART rav1_2 213 319 IPR001471 GO:0003700|GO:0006355
Blo04g01123 530 MobiDBLite consensus disorder prediction 53 76 - -
Blo04g01123 530 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 284 527 - -
Blo04g01123 530 SUPERFAMILY DNA-binding domain 349 409 IPR016177 GO:0003677
Blo04g01123 530 MobiDBLite consensus disorder prediction 53 78 - -
Blo04g01123 530 Gene3D AP2/ERF domain 213 315 IPR036955 GO:0003700|GO:0006355
Blo04g01123 530 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 189 246 - -
Blo04g01123 530 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 185 - -
Blo04g01123 530 Gene3D AP2/ERF domain 350 409 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g01123 Blo-Chr4:18182477 Blo08g00468 Blo-Chr8:10549400 2.92E-115 dispersed
Blo16g00310 Blo-Chr16:7708927 Blo04g01123 Blo-Chr4:18182477 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12349 PF00847 AP2 2.10E-10 CL0081 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g01123 K09285 - qsu:112018242 686.411