Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g01130 ATGAAGGTGCGACAGATGGTAGGGTTGAGCGGCGAGCGATTGCGAGCTAGGGCTCTGGTGGTCGAGCCGTGGCCACAAGATTGGACGAACTCCTGTGTGCTGTGTTTTCTGCTTACTACAAATCATCGGCAGCGATGGATGGCGATGGTGCTCGGCATAGGAGGAATGGTGTCGGGGGGCTGTGATCGACGCTTTGGGTCGAAGAGGCTGGAGCTGGCGGTTCGGGCTGGAGCTGGCGGACGTTGCTCTTTAGATAATTCAGTATCTAGAGCTGCAATCTCTGAAGAAAGATCAGGTGGATCAAATCAATATGTAACTGAAGAACGTGAGGAGGTTATAATTGATTCTCCGCCTCTAGACAAAAATGTATATGGTGAGTACGCGATACCTGAGGTATCTAAAAATGAAGAACTTACTGGGGAGACGAGAACAGAGACATTTGAATTCTTGGATAATCTGAAGGTTGACTCTGTCGATCCTTACGGGATTCTATTCTTTGGTACCAGTTCGTTGGTCTGTCTATGGTTAGCATCGGCAATTGTCGGAGCCATCGATTCCATTCCGGTGTTTCCCAAGTTAATGGAAATGATCGGCCTTGGCTACACAATCTGGTTCACTTCGCGCTACTTACTCTTCAAGGGACTGGTGCTAGCTGTTAGGTGGTGGCAGGGCAAACGGATCATCACTTTTGCATCTGACACCTCGACCGAGATTACAGGAACTGGTGGAAAGGCTCCCTTTCCATTGGTGGCCTTCGACCACACTGATTCCTCAGAGCCAATACAAAACCAAGAACAGGTTTTGGACTGTGATTCTTGTCCGGAATTTACTGAAATGTTGCCATATTTCTTGCCCTTCGCCTCTTTTATCGTCCATTACTTCTTCTTCAGCATGGTTAGGTATGTAGAATGTGCCGATCGGATTGCTTTTCCGTTTCCTATGGTAGTGGGGAGGGGAGAGGGGGAGAGAGAAATTTGGATGGCGAGAGAAAAGATTCAGATCAAGAAGATCGACAACCTAACGGCTAGGCAGGTGACCTTCTCTAAGAGAAGAAGAGGGCTTTTTAAGAAAGCTGAGGAGCTTGCAGTTCTCTGCGATGCTGATGTTGGCCTTATTATCTTCTCCTCTACTGGAAAACTCTTCGAATACGCCAGCTCAAGTATTAAGGAAATTCTGGATCGGCAAAATCTGCATTCTAAGAATCTACGGAAGCTGGAGCAGCCATCGCTCGAGTTGCAGCTAGTGGAGAACAGCAACTACACGATGCTGAACAGGGAAATAGCCGATAAGAGCCATCAATTAAGGCAGATGAGAGGAGAGGAGCTCCAAGGGCTGAATATAGAAGAACTGCTACAACTCGAGAAATCCTTGGAATGTGGATTAAACCGCGTGATGGAGAAGAAGGGTGGAAAGATAATGCAGGAGATCACCGATCTTCAAAGAAAGGTTACTGAAAACTTTATCTCTCTTCTCCGACGATGGATCGTGGAGAGGGACAATGGAATAAGGGAAGTGAGACAGGAGTCAGAAAACGTGGTTGCAGAAGAGGGGCAGTCATCAGAATCAGTCACCAACGTCTGCAACTCCGGTGGACCTCCCCAGGACGATGACAGTTCTGACACATCTCTGAAGTTGGGGTCAGTACAGTTGTCTTTTGACTCCTTCGTCCTTTTTATAAGCATTAAATGTCTACTTTTTGTGCAGGCTACGGCTACGGCTACGGCTACCTTATTCTGGGTAATGTGA 1746 47.48 MKVRQMVGLSGERLRARALVVEPWPQDWTNSCVLCFLLTTNHRQRWMAMVLGIGGMVSGGCDRRFGSKRLELAVRAGAGGRCSLDNSVSRAAISEERSGGSNQYVTEEREEVIIDSPPLDKNVYGEYAIPEVSKNEELTGETRTETFEFLDNLKVDSVDPYGILFFGTSSLVCLWLASAIVGAIDSIPVFPKLMEMIGLGYTIWFTSRYLLFKGLVLAVRWWQGKRIITFASDTSTEITGTGGKAPFPLVAFDHTDSSEPIQNQEQVLDCDSCPEFTEMLPYFLPFASFIVHYFFFSMVRYVECADRIAFPFPMVVGRGEGEREIWMAREKIQIKKIDNLTARQVTFSKRRRGLFKKAEELAVLCDADVGLIIFSSTGKLFEYASSSIKEILDRQNLHSKNLRKLEQPSLELQLVENSNYTMLNREIADKSHQLRQMRGEELQGLNIEELLQLEKSLECGLNRVMEKKGGKIMQEITDLQRKVTENFISLLRRWIVERDNGIREVRQESENVVAEEGQSSESVTNVCNSGGPPQDDDSSDTSLKLGSVQLSFDSFVLFISIKCLLFVQATATATATLFWVM 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18394377 18409973 - BLOR14042 Blo04g01130 60158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g01130 581 SUPERFAMILY SRF-like 329 410 IPR036879 GO:0003677|GO:0046983
Blo04g01130 581 Pfam K-box region 418 484 IPR002487 GO:0003700|GO:0005634|GO:0006355
Blo04g01130 581 PANTHER MADS-BOX PROTEIN SVP ISOFORM X1 327 548 - -
Blo04g01130 581 MobiDBLite consensus disorder prediction 509 540 - -
Blo04g01130 581 ProSiteProfiles MADS-box domain profile. 327 387 IPR002100 GO:0003677|GO:0046983
Blo04g01130 581 Pfam CAAD domains of cyanobacterial aminoacyl-tRNA synthetase 159 213 IPR025564 -
Blo04g01130 581 Gene3D - 339 409 IPR036879 GO:0003677|GO:0046983
Blo04g01130 581 MobiDBLite consensus disorder prediction 512 540 - -
Blo04g01130 581 CDD MADS_MEF2_like 328 394 IPR033896 GO:0000977|GO:0045944
Blo04g01130 581 ProSitePatterns MADS-box domain signature. 329 383 IPR002100 GO:0003677|GO:0046983
Blo04g01130 581 PANTHER SERUM RESPONSE FACTOR HOMOLOG 327 548 - -
Blo04g01130 581 SMART madsneu2 327 386 IPR002100 GO:0003677|GO:0046983
Blo04g01130 581 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 336 383 IPR002100 GO:0003677|GO:0046983
Blo04g01130 581 PRINTS MADS domain signature 364 385 IPR002100 GO:0003677|GO:0046983
Blo04g01130 581 PRINTS MADS domain signature 329 349 IPR002100 GO:0003677|GO:0046983
Blo04g01130 581 PRINTS MADS domain signature 349 364 IPR002100 GO:0003677|GO:0046983
Blo04g01130 581 ProSiteProfiles K-box domain profile. 413 501 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01582 Blo-Chr1:55640009 Blo04g01130 Blo-Chr4:18394377 4.98E-31 dispersed
Blo02g00337 Blo-Chr2:3515444 Blo04g01130 Blo-Chr4:18394377 1.58E-17 dispersed
Blo04g01130 Blo-Chr4:18394377 Blo18g00105 Blo-Chr18:971128 1.54E-73 dispersed
Blo06g00264 Blo-Chr6:13983258 Blo04g01130 Blo-Chr4:18394377 4.10E-19 dispersed
Blo07g00031 Blo-Chr7:522191 Blo04g01130 Blo-Chr4:18394377 8.28E-12 dispersed
Blo04g01130 Blo-Chr4:18394377 Blo17g00098 Blo-Chr17:774926 3.44E-75 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12350 PF01486 K-box 1.30E-11 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g01130 - - qsu:112018313 320.857