Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g01166 ATGGAGGGCAACCAGCCAGCTCAATCATCTTCATACCCGACGACTCAGCCTCCTCCTCCGCCGTCTCAATTTCACCATCTTCTCCAGCAGCAACAGCAGCAGCTCCAGATGTTCTGGTCCTACCATCGCCAAGAAATCGAACAGGTTAATGAGTTCAAAAACCACCAGCTCCCCCTTGCTCGAATCAAGAAGATTATGAAGGCCGATGAGGACGTCCGTATGATCTCCTCCGAAGCCCCGATTTTGTTTGCCAAGGCCTGCGAGCTCTTCATCCTCGAGCTCACGATTAGGTCCTGGCTTCATGCGGAGGAAAACAAGAGGAGGACTCTACAGAAGAATGATATATCGGCGGCGATTACGAGGACTGATATCTTCGATTTTTTGGTTGATATTGTTCCGAGAGATGAGATCAAGGATGAGGGTGGGTTGGAAGGTGTGGTTGGGGCTACTGCTAGTGGCTTACCGTACTATTACCCTCCTTTAGGGCAGCCGGCGGGGGCTCCAGCTGGGATGATGATCGGGAGGCCGGCCATGGATTCCACTGGAATGTACATGCAGCCTCCGTCTCAGGCGTGGCAGTCAGTATGGCAGACTCCGCCGGAAGATGGGACATATGGGAGTGGGGGAAACAGCGGACTTGGCAATCTTAATGGACAAAGTCATTTTGAAGGGCTGTTGATCTACTGTGTTTTGTTCACTAATGGTAAGAAAACAACGGGCCGAGCTGTAACCGAGCGGGCTCGGCCCGGGCCCGGGCCCGGTAGGCGGGCCGAGCCGAGCCCGCAACCCCTGGCTCGCGAGCCCGCCCGCCAGGATCCTGGCGATCCGGCGGTCCCAGCCCAGACTGACTCCCAGTCTGGGAGTGGGACTCCCGTCTCCCAGTTGGCCTCGGCCAGTCCTAGAGTCTCCCGAAGAGTCGAAGACGATGGCGATGGCGAAGAGTCGAAGACGATGGCGATGGAGAGTGAGAGTTGGGACTCTCACAGAGAGTCGTCGACTCTCTCTAGAGTGTCGACTCTCTCTGTGAGACTCACCGACGGTGAGACTCTCACAGAGAGTGTCGACTCTCTCAGAGAGAGCAGAGCCGGAGCGTCGACTCTCACTCACTGTGAGAGTCGAGCTCTGCTCTTTGCAACGGTCTTCCGACTGTTGCAAAGCAATTGCAACGGTCCGAAGACCGTTGGTGGTGTTGGCAAGAATGGCAACGGTCCAGTGACCGTTGCCTTCGGCCTTCCCCCTGTCCCCTTCCCCCCGTTGGCGAGGCGAGTGGGGGGGCGTTGCTTGCTTCTCTGTGTGATCACAGAGAAGCAACGCCGCAACGGTCTTCAGACCGTTGCAATTGCAACGGTCTGA 1353 56.69 MEGNQPAQSSSYPTTQPPPPPSQFHHLLQQQQQQLQMFWSYHRQEIEQVNEFKNHQLPLARIKKIMKADEDVRMISSEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDISAAITRTDIFDFLVDIVPRDEIKDEGGLEGVVGATASGLPYYYPPLGQPAGAPAGMMIGRPAMDSTGMYMQPPSQAWQSVWQTPPEDGTYGSGGNSGLGNLNGQSHFEGLLIYCVLFTNGKKTTGRAVTERARPGPGPGRRAEPSPQPLAREPARQDPGDPAVPAQTDSQSGSGTPVSQLASASPRVSRRVEDDGDGEESKTMAMESESWDSHRESSTLSRVSTLSVRLTDGETLTESVDSLRESRAGASTLTHCESRALLFATVFRLLQSNCNGPKTVGGVGKNGNGPVTVAFGLPPVPFPPLARRVGGRCLLLCVITEKQRRNGLQTVAIATV 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20154829 20156950 + BLOR14078 Blo04g01166 60194

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g01166 450 MobiDBLite consensus disorder prediction 239 340 - -
Blo04g01166 450 MobiDBLite consensus disorder prediction 1 24 - -
Blo04g01166 450 Gene3D Histone, subunit A 22 134 IPR009072 GO:0046982
Blo04g01166 450 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 56 119 IPR003958 -
Blo04g01166 450 MobiDBLite consensus disorder prediction 278 300 - -
Blo04g01166 450 MobiDBLite consensus disorder prediction 302 330 - -
Blo04g01166 450 SUPERFAMILY Histone-fold 18 128 IPR009072 GO:0046982
Blo04g01166 450 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 4 219 - -
Blo04g01166 450 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 4 219 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g01166 - - - csv:101213576 318.931
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00467 Blo-Chr4:3880174 Blo04g01166 Blo-Chr4:20154829 1.32E-69 dispersed
Blo04g01166 Blo-Chr4:20154829 Blo11g00489 Blo-Chr11:4507897 1.49E-56 dispersed
Blo01g00358 Blo-Chr1:4246554 Blo04g01166 Blo-Chr4:20154829 8.01E-08 transposed
Blo16g00273 Blo-Chr16:6419976 Blo04g01166 Blo-Chr4:20154829 8.35E-125 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo04g01166 . 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 82.2 1.7e-82 302.8
Blo16g00273 . 38 222 CCAAT-HAP5 Transcription Factor Family AT3G48590 75.4 3.8e-71 265.0
Blo04g00467 . 48 199 CCAAT-HAP5 Transcription Factor Family AT3G48590 69.3 2.0e-56 216.1
Blo13g00597 . 145 280 CCAAT-HAP5 Transcription Factor Family AT3G48590 70.1 1.1e-49 193.7
Blo11g00489 . 516 673 CCAAT-HAP5 Transcription Factor Family AT3G48590 64.8 2.7e-48 189.1
Blo11g00489 . 469 614 CCAAT-HAP5 Transcription Factor Family AT1G08970 73.5 7.1e-54 207.6
Blo04g00467 . 25 222 CCAAT-HAP5 Transcription Factor Family AT1G08970 59.4 5.9e-48 188.0
Blo13g00597 . 89 243 CCAAT-HAP5 Transcription Factor Family AT1G08970 67.7 2.2e-47 186.0
Blo16g00273 . 38 136 CCAAT-HAP5 Transcription Factor Family AT1G08970 79.8 2.4e-41 166.0
Blo04g01166 . 35 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 78.8 9.1e-41 164.1
Blo11g00489 . 494 670 CCAAT-HAP5 Transcription Factor Family AT1G54830 68.3 3.4e-58 221.9
Blo04g00467 . 47 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 64.4 1.4e-54 209.9
Blo13g00597 . 91 275 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.5 3.4e-50 195.3
Blo04g01166 . 35 199 CCAAT-HAP5 Transcription Factor Family AT1G54830 63.1 2.2e-49 192.6
Blo16g00273 . 38 175 CCAAT-HAP5 Transcription Factor Family AT1G54830 68.6 4.2e-48 188.3
Blo04g01166 . 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 75.3 1.4e-74 276.6
Blo16g00273 . 38 222 CCAAT-HAP5 Transcription Factor Family AT5G63470 68.6 8.2e-64 240.7
Blo04g00467 . 48 204 CCAAT-HAP5 Transcription Factor Family AT5G63470 65.0 4.2e-52 201.8
Blo13g00597 . 145 274 CCAAT-HAP5 Transcription Factor Family AT5G63470 68.9 1.6e-46 183.3
Blo11g00489 . 516 620 CCAAT-HAP5 Transcription Factor Family AT5G63470 81.9 2.5e-44 176.0
Blo04g00467 . 23 176 CCAAT-HAP5 Transcription Factor Family AT1G56170 85.8 6.6e-64 240.7
Blo13g00597 . 110 273 CCAAT-HAP5 Transcription Factor Family AT1G56170 79.4 6.8e-61 230.7
Blo11g00489 . 491 636 CCAAT-HAP5 Transcription Factor Family AT1G56170 65.8 1.3e-48 189.9
Blo04g01166 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 70.6 1.7e-48 189.5
Blo16g00273 . 38 161 CCAAT-HAP5 Transcription Factor Family AT1G56170 73.2 3.9e-48 188.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005355 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12352 PF00808 CBFD_NFYB_HMF 1.90E-17 CL0012 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g01166 Blo_Chr04 FPKM 9.359601 11.769388 30.821754 29.01668 19.973457 22.580332 21.139872 38.096581 37.150631 36.782928