Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g01173 ATGGCTGTCGTGTTTCATGACCTTAGCTCTGATTCAGGCCTTAAGAAGCTAGACGAGTATCTGCTCCCTCGCAGTTACATTACCGGGTATCAAGCCTCTAAGGATGATATTACGGTCCACGCAGCTCTTCAGGGTGCTCCATCTGCTGAATTCGTTAACTTGTCTCGGTGGTACAATCATATTGAAGCACTCTTGAGAATTTCGGGTGTATCTGGAGAAGGTTCTGGTGTTATTGTTTCTAGTTGTGCTACCATTACAGAGGAAGCTGTTGCAACACCACCTGCCGGTGACTCAAAGGCCGCTGCTGTTGAGGATGATGATGACGACATTGATCTATTTGGTGAAGAAACTGAAGAGGAGAAGAAGGTTGCTGAAGAACGCGCTGCTGCTTCTAAGGCGTCGGCAAAGAAGAAAGAGTCTGGCAAGTCTTCAGTTTTGTTGGATGTGAAGCCTTGGGATGATGAGACTGACATGAAAAAACTTGAAGAATCAGTGAGAGCTGTAGAAATGGAAGGATTGCTTTGGGGGGCATCCAAACTCGTGCCTGTTGGATATGGTATCAAGAAATTGCAGATAATGATGACTATTGTGGATGACCTGGTGTCTGTTGACAATCTCATCGAAGAGTATCTCACAGTCGAGCCAATCAATGAGTATGTTCAGAGCTGTGACATTGTGGCATTCAACAAAATCTGTAAGTTCTACTACATACTTTTTCTCTCAAACAAGAAGCATGAGCATGATATAATTGCATTGACGATCTTGTTGTGA 771 44.1 MAVVFHDLSSDSGLKKLDEYLLPRSYITGYQASKDDITVHAALQGAPSAEFVNLSRWYNHIEALLRISGVSGEGSGVIVSSCATITEEAVATPPAGDSKAAAVEDDDDDIDLFGEETEEEKKVAEERAAASKASAKKKESGKSSVLLDVKPWDDETDMKKLEESVRAVEMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDNLIEEYLTVEPINEYVQSCDIVAFNKICKFYYILFLSNKKHEHDIIALTILL 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20660905 20662599 - BLOR14085 Blo04g01173 60201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g01173 256 CDD EF1B 140 231 IPR014038 GO:0003746|GO:0006414
Blo04g01173 256 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 106 114 IPR001326 GO:0003746|GO:0005853|GO:0006414
Blo04g01173 256 Gene3D - 5 75 - -
Blo04g01173 256 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 1 237 - -
Blo04g01173 256 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 220 231 IPR001326 GO:0003746|GO:0005853|GO:0006414
Blo04g01173 256 Gene3D - 135 231 IPR014717 -
Blo04g01173 256 SUPERFAMILY eEF-1beta-like 139 231 IPR036219 -
Blo04g01173 256 SMART EF1_GNE_2 142 231 IPR014038 GO:0003746|GO:0006414
Blo04g01173 256 Pfam EF-1 guanine nucleotide exchange domain 144 231 IPR014038 GO:0003746|GO:0006414
Blo04g01173 256 PANTHER RIPENING REGULATED PROTEIN DDTFR10-LIKE 1 237 - -
Blo04g01173 256 SUPERFAMILY GST C-terminal domain-like 12 68 IPR036282 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00925 Blo-Chr3:35241421 Blo04g01173 Blo-Chr4:20660905 4.98E-85 dispersed
Blo04g01173 Blo-Chr4:20660905 Blo03g01516 Blo-Chr3:42044857 6.67E-11 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g01173 K03232 - mnt:21388962 338.576