Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g01217 ATGCATTCTTGCAGAGCGGGAGCTACTGATCCTGGATCGGAAAAACAGAACCCAGTTAAAGAAATCAGATTCAGGGGCGTAAGGAAGCGGCCGTGGGGTCGATACGCCGCCGAAATCAGAGATCCTTGGAAAAAGACTCGGGTATGGCTCGGCACCTTCGACTCCGCCGAGGACGCTGCCCGAGCTTACGACACCGCCGCTCGAAAACTCCGGGGGCCAAAGGCGAAGACGAATTTCCCATTGATCCCTTCCACTATCTCTTTTCAGCTACAAGTTCCATTTGGTTTATCGCCGGACTTGCACGATGTAAATGGATTCCGCAATACGAGTAGTGTTCAGGTCAATAGACCTACGTCTAGCAGTTTGAGCTCCACCGTAGAGTCTTCCAGTGGCCCCAGGGTGTCTATCCGGCCGTCTTCCACTCCGAAGATCCACCGAATGCCGGTTCCGTTCGTTCTGCCGGATGATTTCCGCAGCGACTGTGACTCGTCTTCCTCTGTTGTTGATGACAGCAATGGTTGCGCTCACACGTCTTCATTCCGCAGAGTCTTGCCTTTCGATCTGAACCTCCCTCCTCCGATGACCTGTTTGGATTAA 597 53.27 MHSCRAGATDPGSEKQNPVKEIRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDSAEDAARAYDTAARKLRGPKAKTNFPLIPSTISFQLQVPFGLSPDLHDVNGFRNTSSVQVNRPTSSSLSSTVESSSGPRVSIRPSSTPKIHRMPVPFVLPDDFRSDCDSSSSVVDDSNGCAHTSSFRRVLPFDLNLPPPMTCLD 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23070283 23070879 + BLOR14129 Blo04g01217 60245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g01217 198 MobiDBLite consensus disorder prediction 110 137 - -
Blo04g01217 198 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Blo04g01217 198 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Blo04g01217 198 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 18 185 - -
Blo04g01217 198 MobiDBLite consensus disorder prediction 110 141 - -
Blo04g01217 198 Gene3D AP2/ERF domain 22 82 IPR036955 GO:0003700|GO:0006355
Blo04g01217 198 CDD AP2 23 80 IPR001471 GO:0003700|GO:0006355
Blo04g01217 198 SUPERFAMILY DNA-binding domain 24 81 IPR016177 GO:0003677
Blo04g01217 198 MobiDBLite consensus disorder prediction 1 22 - -
Blo04g01217 198 Pfam AP2 domain 23 72 IPR001471 GO:0003700|GO:0006355
Blo04g01217 198 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
Blo04g01217 198 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Blo04g01217 198 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 18 185 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo04g01217 Blo13g00356 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01701 Blo-Chr1:56775285 Blo04g01217 Blo-Chr4:23070283 6.25E-33 dispersed
Blo01g01702 Blo-Chr1:56784684 Blo04g01217 Blo-Chr4:23070283 8.15E-32 dispersed
Blo03g01556 Blo-Chr3:43268014 Blo04g01217 Blo-Chr4:23070283 6.23E-33 dispersed
Blo04g01217 Blo-Chr4:23070283 Blo07g00887 Blo-Chr7:27634893 6.89E-39 dispersed
Blo16g01172 Blo-Chr16:40274586 Blo04g01217 Blo-Chr4:23070283 6.49E-25 dispersed
Blo04g01217 Blo-Chr4:23070283 Blo03g00671 Blo-Chr3:28315123 2.49E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12357 PF00847 AP2 1.30E-13 CL0081 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g01217 K09286 - csv:101210265 233.802