Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g01262 ATGAGCAACGGACGACGGCGAGGCTCGAGTACTCGTTGTCCGGCGTCGAGCAGCGATGGTGTGGCTGCGGGCTACGTGATGAATGACGGATTTGCCGCGGAATTGGCGAGCTTGATGGCAGTGGATTGCGATGGAGGAGGGCTTTGGTTCGCTAGTGTGTTGGTTCTCGATGGGCTTGGTCCTCGGTTCGGTCTAAGCTGGTCAATTGCTGGCCTTCATCTGGCAAGCTTTCCACATGAGGATTTATACTGCTGCTCTCGGGTGTGTTTTGGTGAAGGTGCTCTGGAGATTGAGCCAAGGAATTGGATGGAAGCTGTGAAGACAGTGAAGGAGCAAGAGGCTTCCTCTTGGGAGAACTCTGGCCGTGAGCTAATGGCTGAGAAGGTGAAGTTTACAGCTGAGGAGCTTCGCAAAATTATGGATTTGAAGCACAATATTCGGAATATGTCTGTTATTGCGCATGTCGATCATGGAAAGTCAACCCTTACCGATTCACTTGTGGCTGCTGCTGGTATTATTGCTCAGGAGGTTGCAGGTGATGTTAGGATGACAGATACACGAGCAGATGAAGCAGAACGTGGTATCACTATTAAGTCCACTGGAATTTCATTATATTATGAAATGTCTGATGAATCCTTGAAGAGCTACAAGGGAGAGCGAGTTGGAAATGAGTATCTTATAAATCTTATTGATTCTCCTGGACACGTTGACTTCTCCTCTGAGGTCACTGCTGCTCTGCGTATCACCGATGGAGCACTGGTGGTGGTAGATTGCATTGAAGGTGTTTGTGTTCAAACAGAGACTGTACTCCGTCAGGCTCTTGGAGAGAGAATTAGGCCTGTTTTGACAGTTAACAAGATGGACAGGTGCTTCCTTGAACTTCAGGTTGATGGAGAAGAAGCTTATCAAACATTCCAAAGGGTCATTGAAAATGCCAATGTGATCATGGCCACATATGAGGATCCTCTTCTTGGTGACGTTCAGGTCTACCCTGAGAAAGGAACAGTGGCATTCTCTGCTGGTTTACATGGTTGGGCTTTCACACTGACCAACTTTGCAAAGATGTATGCTTCCAAATTTGGTGTTGATGAGTCAAAGATGATGGAGAGGCTTTGGGGTGAAAACTTCTTTGATCCTGCCACTAGAAAATGGACCACCAAAAATACAGGTACTGCATCGTGCAAGCGTGGATTTGTTCAGTTCTGTTATGAGCCCATCAAGCAAATTATTGCAACGTGCATGAATGACCAGAAGGATAAGCTTTGGCCTATGCTGCAAAAGTTGGGGGTGACTATGAAGTCAGATGAGAAGGAGTTGATGGGTAAGGCGCTGATGAAGCGCGTAATGCAGACTTGGCTTCCAGCTAGCACAGCTCTTTTGGAAATGATGATCTTTCATCTTCCCTCTCCTTCCAAGGCTCAAAAGTATCGTGTTGAAAATTTATACGAAGGCCCCCTTGATGACCAATATGCTACTGCAATTAGAAACTGTGACCCTGATGGACCACTTATGCTCTATGTGTCTAAGATGATCCCTGCATCTGATAAAGGTCGATTCTTTGCTTTTGGTCGTGTTTTCTCTGGAAGAGTTGCTACTGGTATGAAAGTGAGGATCATGGGGCCAAACTATGTCCCGGGTGAGAAAAAGGACTTATATGTTAAAAGTGTCCAAAGAACTGTCATTTGGATGGGAAAGAAGCAAGAAACTGTTGAGGATGTTCCTTGTGGAAACACTGTTGCCATGGTTGGGCTTGATCAGTTCATCACCAAGAATGCTACGTTGACCAATGAGAAGGAAGTGGATGCACACCCAATCCGAGCAATGAAATTTTCAGTTTCACCTGTTGTTCGGGTGGCAGTTCAGTGCAAGGTGGCATCTGACCTTCCCAAACTCGTTGAAGGTCTAAAACGTTTAGCAAAATCAGATCCTATGGTTGTTTGTTCAATGGAAGAGTCTGGAGAGCACATTATTGCTGGTGCTGGAGAATTGCACCTCGAAATCTGTTTGAAGGATTTGCAGGACGACTTCATGGGTGGTGCAGAAATTGTGAAATCTGATCCTGTGGTTTCATTCCGTGAGACTGTTCTTGAGAAGTCTTGTCGAACAGTCATGAGTAAATCACCCAATAAACATAACCGACTGTACATGGAAGCCCGTCCAATGGAAGATGGACTTGCTGAGGCAATTGATGACGGTCGCATCGGCCCAAGAGATGACCCAAAAGTGCGTTCAAAAATTTTGGCAGAGGAGTTTGGTTGGGACAAGGATCTTGCCAAAAAGATATGGTGTTTTGGCCCGGAAACAACTGGGCCCAATATGGTTGTGGATATGTGCAAGGGAGTTCAGTATCTCAATGAAATCAAGGACTCCGTCGTTGCTGGATTCCAGTGGGCATCAAAAGAAGGTGCCTTGTGTGAAGAAAACATGAGGGGCATATGTTTTGAAGTTTGTGATGTGGTTCTTCACGCAGATGCGATCCACAGAGGAGGTGGTCAGGTTATTCCTACTGCTAGGAGGGTCATCTACGCATCCCAACTGACAGCCAAGCCCCGACTTCTGGAGCCTGTCTATTTGGTGGAGATCCAAGCACCTGAGCAGGCACTTGGAGGTATTTATAGCGTTCTTAACCAGAAACGTGGGCATGTGTTTGAGGAAATGCAGCGGCCTGGGACCCCTCTTTACAACATCAAGGCCTACCTCCCAGTGGTTGAGTCCTTTGGTTTCTCTGGCACTTTGCGGGCAGCAACCTCAGGCCAGGCTTTTCCACAGTGCGTGTTTGATCACTGGGATATGATGTCGTCTGACCCACTTGAAGATGGATCCCAGGCTGCAGTAAAAGTTGCTGACATTCGAAAGAGGAAGGGCTTGAAGGAGCAGATGACACCACTCTCCGATTTCGAGGACAAGCTATAA 2913 46.82 MSNGRRRGSSTRCPASSSDGVAAGYVMNDGFAAELASLMAVDCDGGGLWFASVLVLDGLGPRFGLSWSIAGLHLASFPHEDLYCCSRVCFGEGALEIEPRNWMEAVKTVKEQEASSWENSGRELMAEKVKFTAEELRKIMDLKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMSDESLKSYKGERVGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATRKWTTKNTGTASCKRGFVQFCYEPIKQIIATCMNDQKDKLWPMLQKLGVTMKSDEKELMGKALMKRVMQTWLPASTALLEMMIFHLPSPSKAQKYRVENLYEGPLDDQYATAIRNCDPDGPLMLYVSKMIPASDKGRFFAFGRVFSGRVATGMKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIVKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPMEDGLAEAIDDGRIGPRDDPKVRSKILAEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALCEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEDGSQAAVKVADIRKRKGLKEQMTPLSDFEDKL 970
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25545836 25553662 - BLOR14174 Blo04g01262 60290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g01262 970 Gene3D - 850 970 - -
Blo04g01262 970 Pfam Elongation Factor G, domain III 614 676 IPR041095 -
Blo04g01262 970 PRINTS GTP-binding elongation factor signature 148 161 IPR000795 GO:0003924|GO:0005525
Blo04g01262 970 PRINTS GTP-binding elongation factor signature 280 289 IPR000795 GO:0003924|GO:0005525
Blo04g01262 970 PRINTS GTP-binding elongation factor signature 228 238 IPR000795 GO:0003924|GO:0005525
Blo04g01262 970 PRINTS GTP-binding elongation factor signature 192 200 IPR000795 GO:0003924|GO:0005525
Blo04g01262 970 PRINTS GTP-binding elongation factor signature 244 255 IPR000795 GO:0003924|GO:0005525
Blo04g01262 970 PANTHER - 129 969 - -
Blo04g01262 970 SUPERFAMILY Translation proteins 470 603 IPR009000 -
Blo04g01262 970 SMART EFG_IV_2 733 849 IPR005517 GO:0005525
Blo04g01262 970 SUPERFAMILY EF-G C-terminal domain-like 854 964 IPR035647 -
Blo04g01262 970 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 185 200 IPR031157 -
Blo04g01262 970 CDD eEF2_snRNP_like_C 854 932 - -
Blo04g01262 970 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 129 969 - -
Blo04g01262 970 TIGRFAM small_GTP: small GTP-binding protein domain 147 303 IPR005225 GO:0005525
Blo04g01262 970 Gene3D Elongation Factor G (Translational Gtpase), domain 3 613 690 - -
Blo04g01262 970 Pfam Elongation factor Tu GTP binding domain 144 469 IPR000795 GO:0003924|GO:0005525
Blo04g01262 970 Gene3D - 696 849 IPR014721 -
Blo04g01262 970 Gene3D - 130 364 IPR027417 -
Blo04g01262 970 SUPERFAMILY EF-G C-terminal domain-like 611 687 IPR035647 -
Blo04g01262 970 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 131 468 IPR027417 -
Blo04g01262 970 SUPERFAMILY Ribosomal protein S5 domain 2-like 689 853 IPR020568 -
Blo04g01262 970 CDD EF2_II 502 597 - -
Blo04g01262 970 CDD aeEF2_snRNP_like_IV 686 858 - -
Blo04g01262 970 Gene3D Translation factors 470 611 - -
Blo04g01262 970 Pfam Elongation factor Tu domain 2 521 594 IPR004161 GO:0005525
Blo04g01262 970 SMART EFG_C_a 851 940 IPR000640 -
Blo04g01262 970 CDD EF2_snRNP_III 614 686 - -
Blo04g01262 970 Pfam Elongation factor G, domain IV 738 849 IPR005517 GO:0005525
Blo04g01262 970 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 144 471 IPR000795 GO:0003924|GO:0005525
Blo04g01262 970 Pfam Elongation factor G C-terminus 851 938 IPR000640 -
Blo04g01262 970 CDD EF2 147 357 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g01262 Blo-Chr4:25545836 Blo05g00516 Blo-Chr5:9268709 1.77E-19 dispersed
Blo02g01057 Blo-Chr2:40792272 Blo04g01262 Blo-Chr4:25545836 9.05E-43 transposed
Blo11g00689 Blo-Chr11:7986130 Blo04g01262 Blo-Chr4:25545836 1.56E-22 transposed
Blo03g00921 Blo-Chr3:35220131 Blo04g01262 Blo-Chr4:25545836 2.71E-136 transposed
Blo07g01250 Blo-Chr7:32648122 Blo04g01262 Blo-Chr4:25545836 4.34E-22 transposed
Blo13g00321 Blo-Chr13:18130516 Blo04g01262 Blo-Chr4:25545836 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g01262 K03234 - csv:101209544 1638.24