Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g01381 ATGATGGTACAGGCGGCGGACTTCTACGAGGCATCGGAGGTGATTTGTCTATTGACTTTGAAATACCTGAAAATCAATCATACATCATCAAATATCTTAATGATTGTATTCCAGGTTGGCCGATCTGGTAATGACTTCTGTAATCCAACAGCGCCGGGGTTGCCTTCGCAAAGCACAGTTCGTGTTCGAAGAGATGGGGTCGCTTTCGCCGAGCCTGGGGTGGCCTTGGCAGAGTCGGGCTTTGCCTTCGTCAGTACCTTCGCCTTCAAGTCGTCGTCTTCGCCTTCAAGGTGCTGCAGAGGAGTTCGGAAGATAAGGGTTAATAGAAGAGCTGCCAGAGGAGTTCGGGAGATACGCTTAACAGCAGGGAAACAGAAGGGTTTTGCAGCCATGGCGAGGAAGAGCAAAGGACGGCAAAAGGTGGAGATGGTGAAGATGCAGAACGAGAGTAATCTCCAAGTGACGTTCTCGAAGCGTCGCTCAGGGCTTTTCAAGAAGGCGAGTGAGCTTTGCACGCTTTGTGGGGCGGAGATTGTAATCGTAGTGTTTTCTCCCGGGAAGAAGGTTTTCTCCTTTGGCCACCCATGTGTCGACTCGCTCATCGAGCGGTTCTTGACCCGAAACCCTCAGCCGACTTCTGGGACTTTGCAGCTCATTGAGGCGCATAGAAACGCCAACGTGCGAGAGCTGAACACTCAATTGACCCAAGTCACAAGCCAACTAGAGAGCGAAAGGATACGAGGAGAGGAGCTCAACAAAATGCGTCGAGACGGCCAAACGGCAGAGTGTTGGTGGGAGTGTCCGGTCGAAGAGCTCGACAAGCCACAACTCGATCAACTCAGGGCTTCCTTGGAAGAGCTGAAGAAGAATGTGGCTAAACAGGCTGATAGAATTCTCATCCAAACCTCAAAGCCTCCTCCTCCCCCTCCTCTTCTTCCTCCTCCTCTTCCTTCTTCTCACTATTTCCATGGAAGTTCAAGCCACCAATTTTCAATGTTTCCTTTGGATTCAAAGAATAATGTTGGATATAATCCTGGCTATGGTCGTGGTTTCTATTGA 1059 50.14 MMVQAADFYEASEVICLLTLKYLKINHTSSNILMIVFQVGRSGNDFCNPTAPGLPSQSTVRVRRDGVAFAEPGVALAESGFAFVSTFAFKSSSSPSRCCRGVRKIRVNRRAARGVREIRLTAGKQKGFAAMARKSKGRQKVEMVKMQNESNLQVTFSKRRSGLFKKASELCTLCGAEIVIVVFSPGKKVFSFGHPCVDSLIERFLTRNPQPTSGTLQLIEAHRNANVRELNTQLTQVTSQLESERIRGEELNKMRRDGQTAECWWECPVEELDKPQLDQLRASLEELKKNVAKQADRILIQTSKPPPPPPLLPPPLPSSHYFHGSSSHQFSMFPLDSKNNVGYNPGYGRGFY 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32921379 32924558 + BLOR14293 Blo04g01381 60409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g01381 352 PRINTS MADS domain signature 138 158 IPR002100 GO:0003677|GO:0046983
Blo04g01381 352 PRINTS MADS domain signature 158 173 IPR002100 GO:0003677|GO:0046983
Blo04g01381 352 PRINTS MADS domain signature 173 194 IPR002100 GO:0003677|GO:0046983
Blo04g01381 352 SMART madsneu2 136 195 IPR002100 GO:0003677|GO:0046983
Blo04g01381 352 Gene3D - 148 214 IPR036879 GO:0003677|GO:0046983
Blo04g01381 352 PANTHER MADS BOX PROTEIN 135 306 - -
Blo04g01381 352 Gene3D - 215 305 - -
Blo04g01381 352 ProSiteProfiles MADS-box domain profile. 136 196 IPR002100 GO:0003677|GO:0046983
Blo04g01381 352 Coils Coil 277 297 - -
Blo04g01381 352 CDD MADS_MEF2_like 137 206 IPR033896 GO:0000977|GO:0045944
Blo04g01381 352 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 145 192 IPR002100 GO:0003677|GO:0046983
Blo04g01381 352 Coils Coil 227 247 - -
Blo04g01381 352 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 135 306 - -
Blo04g01381 352 SUPERFAMILY SRF-like 137 209 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00342 Blo-Chr1:4055882 Blo04g01381 Blo-Chr4:32921379 2.02E-35 dispersed
Blo04g01381 Blo-Chr4:32921379 Blo14g00839 Blo-Chr14:30536227 2.87E-44 dispersed
Blo04g01381 Blo-Chr4:32921379 Blo09g00120 Blo-Chr9:2848890 2.98E-16 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12363 PF00319 SRF-TF 1.50E-23 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g01381 - - csv:101221957 290.426