Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g01381 ATGATGGTACAGGCGGCGGACTTCTACGAGGCATCGGAGGTGATTTGTCTATTGACTTTGAAATACCTGAAAATCAATCATACATCATCAAATATCTTAATGATTGTATTCCAGGTTGGCCGATCTGGTAATGACTTCTGTAATCCAACAGCGCCGGGGTTGCCTTCGCAAAGCACAGTTCGTGTTCGAAGAGATGGGGTCGCTTTCGCCGAGCCTGGGGTGGCCTTGGCAGAGTCGGGCTTTGCCTTCGTCAGTACCTTCGCCTTCAAGTCGTCGTCTTCGCCTTCAAGGTGCTGCAGAGGAGTTCGGAAGATAAGGGTTAATAGAAGAGCTGCCAGAGGAGTTCGGGAGATACGCTTAACAGCAGGGAAACAGAAGGGTTTTGCAGCCATGGCGAGGAAGAGCAAAGGACGGCAAAAGGTGGAGATGGTGAAGATGCAGAACGAGAGTAATCTCCAAGTGACGTTCTCGAAGCGTCGCTCAGGGCTTTTCAAGAAGGCGAGTGAGCTTTGCACGCTTTGTGGGGCGGAGATTGTAATCGTAGTGTTTTCTCCCGGGAAGAAGGTTTTCTCCTTTGGCCACCCATGTGTCGACTCGCTCATCGAGCGGTTCTTGACCCGAAACCCTCAGCCGACTTCTGGGACTTTGCAGCTCATTGAGGCGCATAGAAACGCCAACGTGCGAGAGCTGAACACTCAATTGACCCAAGTCACAAGCCAACTAGAGAGCGAAAGGATACGAGGAGAGGAGCTCAACAAAATGCGTCGAGACGGCCAAACGGCAGAGTGTTGGTGGGAGTGTCCGGTCGAAGAGCTCGACAAGCCACAACTCGATCAACTCAGGGCTTCCTTGGAAGAGCTGAAGAAGAATGTGGCTAAACAGGCTGATAGAATTCTCATCCAAACCTCAAAGCCTCCTCCTCCCCCTCCTCTTCTTCCTCCTCCTCTTCCTTCTTCTCACTATTTCCATGGAAGTTCAAGCCACCAATTTTCAATGTTTCCTTTGGATTCAAAGAATAATGTTGGATATAATCCTGGCTATGGTCGTGGTTTCTATTGA 1059 50.14 MMVQAADFYEASEVICLLTLKYLKINHTSSNILMIVFQVGRSGNDFCNPTAPGLPSQSTVRVRRDGVAFAEPGVALAESGFAFVSTFAFKSSSSPSRCCRGVRKIRVNRRAARGVREIRLTAGKQKGFAAMARKSKGRQKVEMVKMQNESNLQVTFSKRRSGLFKKASELCTLCGAEIVIVVFSPGKKVFSFGHPCVDSLIERFLTRNPQPTSGTLQLIEAHRNANVRELNTQLTQVTSQLESERIRGEELNKMRRDGQTAECWWECPVEELDKPQLDQLRASLEELKKNVAKQADRILIQTSKPPPPPPLLPPPLPSSHYFHGSSSHQFSMFPLDSKNNVGYNPGYGRGFY 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32921379 32924558 + BLOR14293 Blo04g01381 60409

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g01381 352 PRINTS MADS domain signature 138 158 IPR002100 GO:0003677|GO:0046983
Blo04g01381 352 PRINTS MADS domain signature 158 173 IPR002100 GO:0003677|GO:0046983
Blo04g01381 352 PRINTS MADS domain signature 173 194 IPR002100 GO:0003677|GO:0046983
Blo04g01381 352 SMART madsneu2 136 195 IPR002100 GO:0003677|GO:0046983
Blo04g01381 352 Gene3D - 148 214 IPR036879 GO:0003677|GO:0046983
Blo04g01381 352 PANTHER MADS BOX PROTEIN 135 306 - -
Blo04g01381 352 Gene3D - 215 305 - -
Blo04g01381 352 ProSiteProfiles MADS-box domain profile. 136 196 IPR002100 GO:0003677|GO:0046983
Blo04g01381 352 Coils Coil 277 297 - -
Blo04g01381 352 CDD MADS_MEF2_like 137 206 IPR033896 GO:0000977|GO:0045944
Blo04g01381 352 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 145 192 IPR002100 GO:0003677|GO:0046983
Blo04g01381 352 Coils Coil 227 247 - -
Blo04g01381 352 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 135 306 - -
Blo04g01381 352 SUPERFAMILY SRF-like 137 209 IPR036879 GO:0003677|GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g01381 - - - csv:101221957 290.426
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00342 Blo-Chr1:4055882 Blo04g01381 Blo-Chr4:32921379 2.02E-35 dispersed
Blo04g01381 Blo-Chr4:32921379 Blo14g00839 Blo-Chr14:30536227 2.87E-44 dispersed
Blo04g01381 Blo-Chr4:32921379 Blo09g00120 Blo-Chr9:2848890 2.98E-16 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo06g00910 . 1 349 Type I MADS-box Gene Family AT2G03060 50.8 2.2e-92 336.3
Blo04g01381 . 131 297 Type I MADS-box Gene Family AT5G60440 62.7 2.8e-50 196.1
Blo03g01549 . 1 171 Type I MADS-box Gene Family AT5G48670 60.8 1.8e-55 213.4
Blo17g00232 . 1 157 Type I MADS-box Gene Family AT5G48670 62.0 1.5e-49 193.7
Blo06g00910 . 1 349 Type I MADS-box Gene Family AT2G03060 50.8 2.2e-92 336.3
Blo04g01381 . 131 297 Type I MADS-box Gene Family AT5G60440 62.7 2.8e-50 196.1
Blo03g01549 . 1 171 Type I MADS-box Gene Family AT5G48670 60.8 1.8e-55 213.4
Blo17g00232 . 1 157 Type I MADS-box Gene Family AT5G48670 62.0 1.5e-49 193.7
Blo06g00910 . 1 349 Type I MADS-box Gene Family AT2G03060 50.8 2.2e-92 336.3
Blo04g01381 . 131 297 Type I MADS-box Gene Family AT5G60440 62.7 2.8e-50 196.1
Blo03g01549 . 1 171 Type I MADS-box Gene Family AT5G48670 60.8 1.8e-55 213.4
Blo17g00232 . 1 157 Type I MADS-box Gene Family AT5G48670 62.0 1.5e-49 193.7
Blo06g00910 . 1 349 Type I MADS-box Gene Family AT2G03060 50.8 2.2e-92 336.3
Blo04g01381 . 131 297 Type I MADS-box Gene Family AT5G60440 62.7 2.8e-50 196.1
Blo03g01549 . 1 171 Type I MADS-box Gene Family AT5G48670 60.8 1.8e-55 213.4
Blo17g00232 . 1 157 Type I MADS-box Gene Family AT5G48670 62.0 1.5e-49 193.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003994 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 2 2 1 7 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12363 PF00319 SRF-TF 1.50E-23 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g01381 Blo_Chr04 FPKM 8.444145 9.859651 0.0 0.0 0.0 0.0 0.0 3.660604 3.781806 4.020578