Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g01396 TTGATTATTGATGCAGATGATGTAATAGTTACTGGGGTCTTAAGTGCAAAGTGGTCTCCAGACCTTAAAGATGTTCGGTGTGATCTTGACCCCATGTTAATTGCTAATTATGTGAGGAGAACTAATGAGTTGAAATCAGACATAGACATTCCTGAAGATGTTATAGCGAGATTCAAGCAGTTTTGGTCAAATTTCAATGATACTCCATTGAAAGGGAGGAATGCCATTTTAAGAGGTATATGCCCCCAAGTTTATGGACTCTTCACCGTAAAACTTGCAGTTATGTTGACACTTATTGGTGGGGTGCAACAAATTGATGCATCTGGGACTAAGGTTCGAGGGGAATCTCATTTGCTTTTGGTTGGGGATCCAGGTAGCACTAGTGCTGGATTGACTGTTGCTGCTGTTAAGGATGGGGGTGAATGGATGTTGGAAGCTGGGGCACTTGTTTTGGCAGATGGAGGACTTTGTTGCATCGATGAAGTGGACAGCATGAGAGAACATGACAGGGCTACCATACATGAAGCAATGGAGCAGCAGACCATAAGCGTCGCTAAGGCTGGTCTTGTAACAACTCTCAGAACTAGGACGATAGTATTTGGTGCAACAAACCCTAAAGGGCACTATGATCCTGATCAACACACTAAGAATGCTGAATGGGATGAAGTTGTTTCTTCGCACATTCTGTCCGAGGGTGAAGTAGAACAAGGGAAGTTTGAAGATCTATCAAAATCTTGGCCTTTACCTATGCTTCGCAGGTATATTCACTTTGTGAAAGGGCACTTCAGACCTGTGCTGACCAAGGAAGCAGAAAATATCATCTCTAACTATTATCAGCTCCAAAGAAGATCGGCAACACACAATGCAGCAAGGACAACTGTCCGGATGCTTGAAAGTTTGATCCGCCTAGCTCAAGCTCACGCCAGACTCATGTTTAGAAATGAAGTTACACGATTAGATGCCATTACGGCTATATTATGCGTTGAATCATCCATGACTACCTCAGCTATTGTGGACACTGTTGGGAATGCACTCCACTCCAATTTTACAGAGAATCCAGATGAAGAATGTATCCTTTTCAGGTTTTGCGCAAAAAATAGTAATAAATGCATGAAAAAGTTGAATTTA 1128 42.29 LIIDADDVIVTGVLSAKWSPDLKDVRCDLDPMLIANYVRRTNELKSDIDIPEDVIARFKQFWSNFNDTPLKGRNAILRGICPQVYGLFTVKLAVMLTLIGGVQQIDASGTKVRGESHLLLVGDPGSTSAGLTVAAVKDGGEWMLEAGALVLADGGLCCIDEVDSMREHDRATIHEAMEQQTISVAKAGLVTTLRTRTIVFGATNPKGHYDPDQHTKNAEWDEVVSSHILSEGEVEQGKFEDLSKSWPLPMLRRYIHFVKGHFRPVLTKEAENIISNYYQLQRRSATHNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCVESSMTTSAIVDTVGNALHSNFTENPDEECILFRFCAKNSNKCMKKLNL 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33570200 33593652 - BLOR14308 Blo04g01396 60424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g01396 376 Gene3D - 216 337 IPR027417 -
Blo04g01396 376 ProSiteProfiles MCM family domain profile. 72 205 IPR001208 GO:0003677|GO:0005524|GO:0032508
Blo04g01396 376 Pfam MCM P-loop domain 125 216 IPR001208 GO:0003677|GO:0005524|GO:0032508
Blo04g01396 376 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 82 338 IPR027417 -
Blo04g01396 376 SMART mcm 1 333 IPR031327 GO:0003677|GO:0005524|GO:0032508
Blo04g01396 376 PRINTS Mini-chromosome maintenance (MCM) protein family signature 175 188 IPR001208 GO:0003677|GO:0005524|GO:0032508
Blo04g01396 376 PRINTS Mini-chromosome maintenance (MCM) protein family signature 113 128 IPR001208 GO:0003677|GO:0005524|GO:0032508
Blo04g01396 376 PRINTS Mini-chromosome maintenance (MCM) protein family signature 147 161 IPR001208 GO:0003677|GO:0005524|GO:0032508
Blo04g01396 376 PRINTS Mini-chromosome maintenance (MCM) protein family signature 198 210 IPR001208 GO:0003677|GO:0005524|GO:0032508
Blo04g01396 376 Gene3D - 65 215 IPR027417 -
Blo04g01396 376 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 5 359 IPR031327 GO:0003677|GO:0005524|GO:0032508
Blo04g01396 376 PANTHER DNA HELICASE MCM9 5 359 - -
Blo04g01396 376 Pfam MCM AAA-lid domain 250 331 IPR041562 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g01396 Blo-Chr4:33570200 Blo10g00430 Blo-Chr10:7793506 6.79E-43 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g01396 K10738 - tcc:18608252 595.89