Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo05g00009 ATGCCTTCTGTGTACGGTGCTCGTTTGACCACCTTTGAAGACTCTGAGAAGGAACGGGAGTATGGATATGTTCGCAAGGTTTCGGGCCCCGTTGTGGTTGCAGATGGCATGGCAGGTGCTGCCATGTATGAATTGGTTCGAGTTGGTCACGATAATCTGATTGGTGAAATTATTCGACTGGAAGGAGATTCTGCTACTATCCAAGTTTACGAGGAAACAGCTGGGTTGATGGTGAATGACCCTGTTCTGCGGACACATAAGCCTTTGTCGGTGGAATTGGGACCTGGAATACTGGGAAACATATTTGATGGAATTCAGAGACCTCTGAAAACTATTGCAAAAAGATCTGGAGATGTCTACATACCTCGTGGGGTATCAGTGCCAGCACTTGACAAAGATATTCTTTGGGATTTTCAGCCAAAAAAACTCAGTGAAGGTGATCTTTTGACTGGTGGAGACTTGTATGCTACTGTCTTTGAGAATAGTTTAATGCAGCACCATATTGCACTTCCTCCTAATTCAATGGGAAAAATTACTTACATTGCTCCAGAGGGTCAATATTCATTGAAGGATACAGTGTTAGAGCTGGAGTTTCAAGGTGTTAAAAAGCAATTTACCATGCTTCAGACATGGCCTGTACGTACACCTAGGCCTGTTGCATCAAAACTTGCTGCTGATACCCCTCTACTTACCGGTCAGCGTGTTCTTGATGCTCTTTTTCCTTCTGTTCTTGGTGGCACTTGTGCCATACCTGGAGCATTTGGTTGTGGAAAAACTGTCATTAGTCAAGCTCTTTCTAAGTACTCAAATTCCGACACTGTGGTTTATGTTGGTTGTGGAGAGCGAGGAAATGAAATGGCAGAGGTTCTTATGGATTTTCCGCAATTGACAATGACATTGCCTGATGGCCGTGAAGAATCTGTCATGAAACGCACTACACTTGTGGCCAACACTTCTAACATGCCTGTGGCTGCCCGTGAGGCTTCAATATATACTGGAATCACCATTGCTGAATACTTCAGAGATATGGGATACAATGTGAGTATGATGGCAGATTCTACTTCTCGTTGGGCAGAAGCACTGCGTGAGATATCTGGACGACTGGCAGAAATGCCTGCAGATAGTGGATATCCTGCTTATCTTGCGGCACGTTTAGCTTCTTTCTATGAGCGTGCTGGAAAAGTAAAATGTCTTGGTGGACCTGAACGTAATGGTAGTGTTACAATTGTTGGTGCAGTTTCTCCTCCTGGAGGAGATTTTTCTGATCCTGTAACATCTGCTACCCTCAGTATTGTACAGGTTTTCTGGGGACTAGACAAGAAGCTTGCTCAAAGAAAACACTTCCCATCTGTAAACTGGCTTATTTCTTACTCAAAATACTCAACTGCATTGGAATCCTTCTATGAGCAGTTTGACCAAGATTTTATTAACATCAGGACAAAGGCTCGTGAGGTGCTACAAAGAGAAGATGACCTTAATGAGATTGTTCAAGTAAACCAGGATACAGTACTTGTGATAATCATGGCTGGTGTGAAGCAACTACTCTCAGAGCTTGTTGGAAAAGATGCATTAGCTGAAGGAGATAAAATTACCCTCGAGACTGCAAAACTTCTGAGAGAAGACTATCTAGCTCAGAATGCATTCACTCCATATGATAAATTCTGCCCATTTTACAAGTCTGTTTGGATGATGCGCAACATCATTCATTTCTACAATTTGGCCAATCAGGCTGTAGAGAGAGGAGCTGGTATGGATGGTCAGAAGATAACATACACTCTGATCAAGCACCGATTAGGAGATCTTTTTTATCGGCTGGTGTCCCAAAAATTTGAGGACCCAGCGGAAGGAGAAGAAGCACTTGTTTCAAAATTTAAGAAGCTGCATGAAGACCTGACAAATGGTTTCCGTGCCCTCGAGGACGAAACTCGGTGA 1932 43.37 MPSVYGARLTTFEDSEKEREYGYVRKVSGPVVVADGMAGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAKRSGDVYIPRGVSVPALDKDILWDFQPKKLSEGDLLTGGDLYATVFENSLMQHHIALPPNSMGKITYIAPEGQYSLKDTVLELEFQGVKKQFTMLQTWPVRTPRPVASKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERNGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDQDFINIRTKAREVLQREDDLNEIVQVNQDTVLVIIMAGVKQLLSELVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVERGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEEALVSKFKKLHEDLTNGFRALEDETR 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 87913 95175 + BLOR14971 Blo05g00009 60443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo05g00009 643 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 17 89 IPR036121 GO:0046034|GO:1902600
Blo05g00009 643 Gene3D - 91 457 IPR027417 -
Blo05g00009 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 462 IPR027417 -
Blo05g00009 643 Hamap V-type ATP synthase alpha chain [atpA]. 19 642 IPR022878 GO:0046034|GO:0046961
Blo05g00009 643 Gene3D - 459 503 IPR024034 -
Blo05g00009 643 ProSitePatterns ATP synthase alpha and beta subunits signature. 449 458 IPR020003 GO:0005524
Blo05g00009 643 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 3 642 IPR022878 GO:0046034|GO:0046961
Blo05g00009 643 CDD ATP-synt_V_A-type_alpha_C 475 601 - -
Blo05g00009 643 TIGRFAM V-ATPase_V1_A: V-type ATPase, A subunit 20 631 IPR005725 GO:0033180|GO:0046961|GO:1902600
Blo05g00009 643 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 471 573 - -
Blo05g00009 643 Gene3D - 513 642 IPR024034 -
Blo05g00009 643 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 3 642 - -
Blo05g00009 643 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 232 458 IPR000194 GO:0005524
Blo05g00009 643 CDD ATP-synt_V_A-type_alpha_N 21 87 - -
Blo05g00009 643 Gene3D - 20 89 IPR023366 -
Blo05g00009 643 CDD V_A-ATPase_A 88 460 - -
Blo05g00009 643 Pfam ATP synthase alpha/beta family, beta-barrel domain 25 85 IPR004100 GO:0046034|GO:1902600
Blo05g00009 643 Gene3D - 134 205 - -
Blo05g00009 643 Pfam ATPsynthase alpha/beta subunit N-term extension 102 223 IPR031686 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00009 Blo-Chr5:87913 Blo11g00757 Blo-Chr11:10337039 5.84E-24 dispersed
Blo05g00009 Blo-Chr5:87913 Blo06g00777 Blo-Chr6:31051518 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo05g00009 K02145 - twl:119990362 1190.64