Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo05g00042 ATGATGAAAAATGGGTGTCCTTTCACTTCAGCTCAATGGCAAGAGCTTGAGCACCAATCTTTGATCTTCAAATACATGGCGACTGGATCTCCGATTCCCACCGATCTCATTTCTTCACTCAGAAGAAGCTTCGACTCCTCAATTTCTTCCAAACTTTTCCCTCGCCACCCCATTGGGTGGGGTTGTTATGAGATGGGTTGTGGTAAGAAAGCAGACCCAGAGCCAGGAAGGTGCAGAAGAACAGATGGGAAAAAATGGAGGTGCTCAAAAGAAGCATACCCAGATTCCAAGTACTGTGAAAGGCATATGCATCGAGGCAGAAATCGTTCAAGAAAGCCTGTGGAAGTTTCTTCGACTTCATCATCTCCATCTCCACCCATCTCATCAGCAAACAACTTCTCCATTTCCAATCCCACAACCTATTCTTCCTCTCTCTCTTTATCTCCATCTCTCTCCTCTGCACAAGCACTCTCATTCCACAGCCATTGTCGTGATTCAGCTCTTCATCACTTGCTTCACCCTCTTTCTCCTCCTCCTCCTAATCCCCCTGTTACTGCATTTTCCTCTCACGGCTCCACTCAAAGCTTTTTGCTTATGATCATGGAACAAGGGATGGTCGAGATGAACAAGCTTTTTTCCCAGAAACCTCAGATGACTGTGGTTTTCTTCGGGAATGATTACTACGCCGTCTATGGCCCGGTGAATTCTGATTTAGCTGAGGAGAAAACAGGCGGGGCGGTGGCGGTGACTTTAATGAAGGTGATGGGGGAGGAGGAGATAGTGGCGACGGCGGTGGAGGTCGTGATGTGGAGTCGACACAAAGAGCAAACGCAGCGATGA 840 47.86 MMKNGCPFTSAQWQELEHQSLIFKYMATGSPIPTDLISSLRRSFDSSISSKLFPRHPIGWGCYEMGCGKKADPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEVSSTSSSPSPPISSANNFSISNPTTYSSSLSLSPSLSSAQALSFHSHCRDSALHHLLHPLSPPPPNPPVTAFSSHGSTQSFLLMIMEQGMVEMNKLFSQKPQMTVVFFGNDYYAVYGPVNSDLAEEKTGGAVAVTLMKVMGEEEIVATAVEVVMWSRHKEQTQR 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 363629 367387 + BLOR15004 Blo05g00042 60476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo05g00042 279 SMART QLQ_2 6 42 IPR014978 GO:0005524|GO:0005634|GO:0006355
Blo05g00042 279 MobiDBLite consensus disorder prediction 113 131 - -
Blo05g00042 279 PANTHER GROWTH-REGULATING FACTOR 5 3 195 - -
Blo05g00042 279 Pfam QLQ 7 39 IPR014978 GO:0005524|GO:0005634|GO:0006355
Blo05g00042 279 PANTHER - 3 195 IPR031137 GO:0005634|GO:0006351|GO:0032502
Blo05g00042 279 Pfam WRC 73 115 IPR014977 -
Blo05g00042 279 ProSiteProfiles QLQ domain profile. 7 42 IPR014978 GO:0005524|GO:0005634|GO:0006355
Blo05g00042 279 ProSiteProfiles WRC domain profile. 72 116 IPR014977 -
Blo05g00042 279 MobiDBLite consensus disorder prediction 99 131 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00042 Blo-Chr5:363629 Blo15g00013 Blo-Chr15:107669 1.04E-48 dispersed
Blo05g00042 Blo-Chr5:363629 Blo08g00362 Blo-Chr8:5756039 3.91E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12367 PF08879 WRC 1.40E-21 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo05g00042 - - gmx:100806024 208.764