Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo05g00074 ATGGGGAAGGCTACGAGATGGTTCAAAGGGCTGTTCGGGATGAAAAAGGACAAGGCCCAGCAACCGGAGAATTCAAAGATAAAAGCTTTCGAGAAGAACGAGACGAGGAGGTGGAGTTTCACAAAGTCAGGAACGGATTCCTCTGTCGGTGGGCGGCCTCAGCTTCCGGTCACGGCGGCTCCGTCTTCAAATGTTTCTGCTGCAGACGCGGCTTGGTTGAGATCCTTCTTTGCTGCGTCTGAAAAAGACCAGAACAAGCACGCAATCGCAGTCGCAGCGGCCACTGCAGCTGCTGCCGACGCCGCAGTTGCCGCAGCCCAGGCGGCCGTCGCGGTCGTCAGGCTGACGAGCAGAGGGGGAGGAGCCCTGTTTCTCGGCGGCAGAGAAAAGTGGGCTGCCGTCAAGATTCAAACTGTTTTCAGAAGCTATTTGGCTCGAAAGGCTCTACGAGCTCTCAGAGGACTGGTTAAGATTCAGGCTCTGGTTAGAGGCTTTCTCGTCAGAAAACGGGCCGCTGCAACTCTCCATAGTATGCAAGCTCTCATTAGAGCTCAAGCTGCTGCTCGGTCTGAACGAGCGCGTCGTTCGTTCAATCACGACAACAGATTTCTCCCCCAAATCCGATCCCGAAAATCGACTAGGATGTCGGCGTCGTATGAATCTTCGATTGACGAAAGCCCTAAGATCGTCGAAATCGATACCTGCAAACCTAGATCGAGGTCTCGGCGATTCACTTCCGTATATTCCGAATGTGGAGAAGACGTACCTTCTCCTTTTCCGAATCCCGTTCCGCCTCGCATTTCCGTTCCGGATTGCAGACACATTCAAGACTTCGACTATTGCTTCATCGGCGACGACTGCAAGTTCCCCACCGCTCAGAGCACGCCTCGATTGACAACCTCCATGCGCTCCAACGCTCCGGTGACGCCGTCAAAGAGCGTCTGCGGCGAAGCCTTCTTCCGGCCGTACATAAACTTTCCAAATTACATGGCGAACACTCAATCATTCAACGCGAAATTGCGATCATACAGTGCTCCCAAGCAAAGACCAGAAACAGGGTCGAAGAAGAGACTCTCGCTCAATGAAATAATGGCAGCCAGAAACAGTCTCAGCAGCGTCAAAATGCAGAGGCCATACTACCAAATCCTAGAGTAA 1155 52.99 MGKATRWFKGLFGMKKDKAQQPENSKIKAFEKNETRRWSFTKSGTDSSVGGRPQLPVTAAPSSNVSAADAAWLRSFFAASEKDQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSRGGGALFLGGREKWAAVKIQTVFRSYLARKALRALRGLVKIQALVRGFLVRKRAAATLHSMQALIRAQAAARSERARRSFNHDNRFLPQIRSRKSTRMSASYESSIDESPKIVEIDTCKPRSRSRRFTSVYSECGEDVPSPFPNPVPPRISVPDCRHIQDFDYCFIGDDCKFPTAQSTPRLTTSMRSNAPVTPSKSVCGEAFFRPYINFPNYMANTQSFNAKLRSYSAPKQRPETGSKKRLSLNEIMAARNSLSSVKMQRPYYQILE 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 735387 737102 - BLOR15036 Blo05g00074 60508

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo05g00074 384 PANTHER IQ-DOMAIN 5-RELATED 1 379 - -
Blo05g00074 384 Gene3D - 72 154 - -
Blo05g00074 384 ProSiteProfiles IQ motif profile. 177 206 IPR000048 GO:0005515
Blo05g00074 384 SMART iq_5 128 150 IPR000048 GO:0005515
Blo05g00074 384 SMART iq_5 151 172 IPR000048 GO:0005515
Blo05g00074 384 PANTHER - 1 379 - -
Blo05g00074 384 ProSiteProfiles IQ motif profile. 129 157 IPR000048 GO:0005515
Blo05g00074 384 Pfam IQ calmodulin-binding motif 131 150 IPR000048 GO:0005515
Blo05g00074 384 Pfam IQ calmodulin-binding motif 156 170 IPR000048 GO:0005515
Blo05g00074 384 Pfam Protein of unknown function (DUF4005) 293 372 IPR025064 -
Blo05g00074 384 ProSiteProfiles IQ motif profile. 153 180 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo05g00074 - - - qsu:111988320 453.751
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo05g00074 Blo10g00997 CCT
Blo05g00074 Blo10g00997 ECH
Blo05g00074 Blo06g00714 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00074 Blo-Chr5:735387 Blo15g00158 Blo-Chr15:1622332 4.09E-29 dispersed
Blo10g00997 Blo-Chr10:29222809 Blo05g00074 Blo-Chr5:735387 2.30E-101 wgd
Blo14g00521 Blo-Chr14:7389636 Blo05g00074 Blo-Chr5:735387 4.06E-106 wgd
Blo05g00074 Blo-Chr5:735387 Blo06g00714 Blo-Chr6:30238211 0 wgd
Blo05g00074 Blo-Chr5:735387 Blo08g00322 Blo-Chr8:4751322 2.80E-107 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g268 Blo05g00074 Blo06g00714 . . Bpe06g00755 Bpe10g00674 . Bma13g01244 Cmo08g00706 Cmo17g00728 Cma01g00093 Cma14g01288 Car01g00077 Car14g01140 . Cpe12g00644 Cpe17g00525 . . . . . . . Cla07g01269 Cam07g1230 Cec07g1451 Cco07g1412 Clacu07g1334 Cmu07g1313 Cre07g1696 Cone20ag1278 Cone17ag0129 Cone16ag0724 Cone2ag0310 Lsi02g02822 Csa07g02270 Chy04g00953 Cme01g02724 . Blo10g00997 . . . Bpe09g00007 . Bma15g00349 . Cmo01g00094 Cmo14g01322 Cma08g00741 Cma17g00759 Car08g00629 Car17g00704 Cpe02g01697 Cpe03g01092 Bhi09g00470 . . . . . . Cla09g00021 Cam09g0023 Cec09g0022 Cco09g0024 Clacu09g0028 . Cre09g0022 Lsi07g00528 Csa03g02352 Chy01g02095 Cme04g01144
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo13g00730 CCT,ECH 65 305 IQD Protein Family AT3G09710 50.8 6.9e-56 215.3
Blo09g00550 BCT 1 468 IQD Protein Family AT5G03040 50.3 7.4e-103 371.3
Blo13g00730 CCT,ECH 1 466 IQD Protein Family AT3G52290 51.1 1.1e-95 347.4
Blo03g01027 . 10 361 IQD Protein Family AT3G22190 57.0 4.0e-79 292.4
Blo01g01460 BCT 1 439 IQD Protein Family AT2G26180 60.9 4.6e-120 428.3
Blo12g01017 BCT 1 431 IQD Protein Family AT2G26180 60.9 1.8e-119 426.4
Blo18g00281 . 414 674 IQD Protein Family AT2G26180 56.3 6.8e-63 238.4
Blo03g01027 . 41 212 IQD Protein Family AT2G26180 61.7 1.1e-41 167.9
Blo16g00006 . 1 274 IQD Protein Family AT2G33990 52.5 5.6e-63 238.0
Blo07g00960 . 83 287 IQD Protein Family AT3G15050 54.1 3.6e-54 208.8
Blo02g00186 . 1 502 IQD Protein Family AT4G00820 50.4 1.5e-110 397.1
Blo05g00074 BCT,CCT,ECH 1 378 IQD Protein Family AT3G16490 50.9 1.0e-68 257.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004070 3 1 3 2 3 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 2 1 1 1 1 1 2 1 0 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo05g00074 Blo_Chr05 FPKM 11.517045 12.373765 2.733958 2.65325 4.880871 6.311814 4.888651 1.649648 1.458004 1.065036