Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo05g00261 ATGCTCCGGCGACGACGAAGCGTTGGGTCGTGCGATGGAGGCTCGGTGCTCCGGACGGTCCTTCTCGGCAATGAGTCGGACTTCACAAATCGTTTCGGCGGGTTCGAAAGCTCCGGCCCAGTTTATCTCGGCAGGGGATGGAGACCGAGATATGGTGATGGGTATGGTCGAGAACTCCTTTGTCTGTTGGTATTGGAAAGAGGAAAGAGAAGGATAGTGAGTAAGTGCATTACGCAACAAAGATTTGAGGTAAGGAATGTAGGTACTGTACGTAGAGGAATGCTTGAACTAGGAGTAGCAAAAGATAAAGAACAAACAATAGCAAGCAGGGATGATGGGTTTGCACGCTCGAGGGATGCTCACGGCTGGCTAGACATAAAAATGGTTCGGTTTAAGCTCGTTAGTGGCGGTGGAGTTGATGCTGGTCATTATAGCCAAAGCTGCACTCATGTCATTGTGGATAAACTCATTTATGATGATATTGTTTGTGTTGCCGCAAGAAACGATGGGAAGATGCTCGTCACAGGTCTATGGGTTAATCATAGTTACGATCTCGGAGTAGCAGTGAATGCTTTCTCAATTCTGTACAGACCGGTTGTGGATCTGAATGGTATTCCAGGTGCTGATAGATTAACCATCTGCTTGACTGGGTACCAACGGCAAGATAGGGATGATGTTATGACAATGGTTAGCTTGATGGGTGCAAAATTTTCTAAGCCATTAATTGCGCACAAGGTTACTCATCTCATATGCTATAAGTTTGAGGGAGAGAAATATGAGCTAGCCAGAAGATTGAAGACAATAAAGCTTGTTAATCATCGTTGGTTGGAAGATTGGCAAGTCTTGACTTCTTTTGGATTTGACCTGGAAAATACTGAACTTGAAGCTAAGGATTCTGAAGAGGAGAGTGACAACAACGTTGTAAAACATATTGGAGTGAGAAGCACAAAAAGCCCTATTACTTTGCAACCTAGTTCAACTTTGAACCGGCATTTGCCCACATCTGTCTCTGGTACTTCAAGCATATTGCCAGTTTCAACTATTTCAGAGGATCCAAAAAACATTGTTGTAGCTAAGAATGCTGTGTTGGTACCTGTGGACGACAATAAACGTACATTGCCAAGAAATTCCAGTGATATTGATATTTCTTGTTCTGAACTAGCTGATATTCACCTGAGAACTCCTGTGTCAAAAAAGATTAGTGATGACATTGTATCACCTTCTCTCAATGTGAATACAGAGGCTCAGTCCGGTTCTAGAAGTTACTCAAGGAGGAATCCAAGGAAATCTACACTTCTGCATTCTGTTCGAAGATTGAACAATTTACTTGATTCTCCAATACCTTTCAGTGGATCAAAGGTTAATCACAGTTTTGAACCACCCTTGTCCATGGTGGAGCCAGAACAGGAAAATAATGGATCTGGTCGTGTACAAACTCCTGAGAAAGGAGCTGCAGTGTCTGAAGAAGTATTAATTAGTGGACCGCCACATATAAGCACTTCAGATCCTTCTAATTATAGCTTGAAATCATTGTCAAGTCCTGTAAATGCTGAAATGGTAAGATTGAAAATCACACCTCCTTCCCTTGAGAATGATGGTCCATCAAAACTCGAGAGTTGTGATCCGAGTCTTCCACAGAATTCACCTCACAGAAGTCTGGTGGCCACATCCATTTGCCTTCCAGAGAATCCATTTGCGATTGATATTCCTACATCAAGAACCAGTACTGACTTAGATGGTAATGTTGACAGGATATCTCAAAGATCTTTGCTGGGTCCTGGCCAAGTAGTCAGTGAATATGAACGGACCCAGAATCAGCAGCCAGATGTTAAGGAAACACCTAGTGGTGATAAGAGTGTGAAAGCTGGGAAATTAAAAGATGTTAGCATCAACTTTCTTAGACCAGAGAATAATAGCTTACGCAAAAGTCCTCGGAAGAAAACGTTTTTCAAGAAGAGTCTGGGTTCTAGGCCTAAAATTGGTTTAACCGTTAACCAAAAGGGTTCTATTCACTTAAGAAAAGAAGATGGTCTTTCAAATCATGACACTTTTTCTGGCGAAGGTAACCCAGAGAAATTCGTCAATACAGCATGTGTTTTATCAACTGGGACTGGTAACAATAAAATTTCCAAGGATACTGAAACAAAAGAGGTCTGTAAGCATAACATTGAATCTGTCGATGATGAAACCGAAGCTCCAGATAATATTGAAGATCTTGAGCTGGAGAAAACCGAGGAAAAAAGTGAACTGAAGGTGCAACATGAATCTAATAACTTTCAGGTTAGTATGCTAGCTAAGACAGTTGCCTCAGTACCAATGGTGGGAGAACCCAAACCAGATAGTCCGGTTTGCGACAGGAATGCTGAACTGGATGAAACAAAGATAAAAAGAGATGTAAATCGCAAAGCGAGTCCAAGAAAAAAGCGTCCTGCAAGCAAAACAAAAGTTAGAAGTATTACCTCAACCAATTGTAAGGAAAGCATGGATGGTGGAGTAATTCAGAATGCGAATACCGAGGAAATAAAGGAAAAACCATTGGCACGTGCAAGGCTGAAAACTAAAAGTTGCAGCACACTACCCGCTGATATGTCAGGGAAATCTATTGAAGTGGAGAAAGAAAACAGGCCAGTCATAGATGCCAATCAAAATGTAGGTCAGGTTGAAAAGTTTCCAGAAAAGCCAACTATAAAATCTAATGCAAATTCAAGAAAGACAAAAAAGATGTCAGCAGAAACAAATACTGCTCCTGTTCGGTCAACAGGGGGTATTTTGATAGAGATAAAAAATGACCCTGAGTGTTTTATTTTGAGTGGCCATAGACTACAGAGAAAGATGTTCCAACAAATTATAAGGCTTTTGAAAGGAAGATGTTGCAGAGATTCACATCAGTGGTCTTACCAGGCAACTCACTTTATTATCCCAGATCCAATTCGTAGAACAGAAAAGTTTTTTGCTGCCACAGCATCTGGAAGGTGGGTGCTTAAGACTGATTATTTAACAGCTAGTAAACAAGCCAGTAGATTCCTAGAAGAGGAACCTTATGAATGGTACAAGAATGGGCTTAGTGAGGATGGGGCAATAAATTTGGAGGCTCCAAGGAAATGGCGGCATTTGAGAGAGAGGACAGGTCATGGTGCCTTTTATGGCATGAAAATTATCATATACGGGGAATGTATCGCCCCCCCTCTGGATACTCTCAAGCGTGTTGTGAAGGCCGGAGATGGGACTATATTAGCCACATCTCCTCCTTACACTCGCTTCCTCACCTCAGAAGTCGACTTTGCGATTGTCAGCCCAGGCATGCCACGTGTTGACATTTGGGTTCAAGAGTTTTTAAAACACGAGATACCCTGTGTTGTAGCGGATTACTTGGTCGAATACGTTTGTAAGCTAGGATACCCTCTGGAAAAACACGTGCTGTACAATACTCAGCCATGGGCGGAGAAATCGTTTAGCAACCTCCAGAAGAAGGCCGAAGAAGTTGCCAAGGTTTCGGCTTCCCAGAATAATTTCGAGGGCAACGATATTGCCTGTCAGGTTTGCGAGTCCTGCGATAGAGGGGATGTGATGCTGATCTGTGGGGACGAAAGCGGCACTGTTGGCTGTGGAGTTGGCATGCATATAGATTGCTGCAATCCTCCATTACAAGATATTCCAGAAGATGACTGGTTTTGTCCAGAATGTGTTTCAAACAAAAAGACGACCAACTCCCCTAAGAAAAGGAGAAGGCAAGGAAAGTCATCGAAGATGGAGTGA 3756 42.55 MLRRRRSVGSCDGGSVLRTVLLGNESDFTNRFGGFESSGPVYLGRGWRPRYGDGYGRELLCLLVLERGKRRIVSKCITQQRFEVRNVGTVRRGMLELGVAKDKEQTIASRDDGFARSRDAHGWLDIKMVRFKLVSGGGVDAGHYSQSCTHVIVDKLIYDDIVCVAARNDGKMLVTGLWVNHSYDLGVAVNAFSILYRPVVDLNGIPGADRLTICLTGYQRQDRDDVMTMVSLMGAKFSKPLIAHKVTHLICYKFEGEKYELARRLKTIKLVNHRWLEDWQVLTSFGFDLENTELEAKDSEEESDNNVVKHIGVRSTKSPITLQPSSTLNRHLPTSVSGTSSILPVSTISEDPKNIVVAKNAVLVPVDDNKRTLPRNSSDIDISCSELADIHLRTPVSKKISDDIVSPSLNVNTEAQSGSRSYSRRNPRKSTLLHSVRRLNNLLDSPIPFSGSKVNHSFEPPLSMVEPEQENNGSGRVQTPEKGAAVSEEVLISGPPHISTSDPSNYSLKSLSSPVNAEMVRLKITPPSLENDGPSKLESCDPSLPQNSPHRSLVATSICLPENPFAIDIPTSRTSTDLDGNVDRISQRSLLGPGQVVSEYERTQNQQPDVKETPSGDKSVKAGKLKDVSINFLRPENNSLRKSPRKKTFFKKSLGSRPKIGLTVNQKGSIHLRKEDGLSNHDTFSGEGNPEKFVNTACVLSTGTGNNKISKDTETKEVCKHNIESVDDETEAPDNIEDLELEKTEEKSELKVQHESNNFQVSMLAKTVASVPMVGEPKPDSPVCDRNAELDETKIKRDVNRKASPRKKRPASKTKVRSITSTNCKESMDGGVIQNANTEEIKEKPLARARLKTKSCSTLPADMSGKSIEVEKENRPVIDANQNVGQVEKFPEKPTIKSNANSRKTKKMSAETNTAPVRSTGGILIEIKNDPECFILSGHRLQRKMFQQIIRLLKGRCCRDSHQWSYQATHFIIPDPIRRTEKFFAATASGRWVLKTDYLTASKQASRFLEEEPYEWYKNGLSEDGAINLEAPRKWRHLRERTGHGAFYGMKIIIYGECIAPPLDTLKRVVKAGDGTILATSPPYTRFLTSEVDFAIVSPGMPRVDIWVQEFLKHEIPCVVADYLVEYVCKLGYPLEKHVLYNTQPWAEKSFSNLQKKAEEVAKVSASQNNFEGNDIACQVCESCDRGDVMLICGDESGTVGCGVGMHIDCCNPPLQDIPEDDWFCPECVSNKKTTNSPKKRRRQGKSSKME 1251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2899685 2910281 - BLOR15223 Blo05g00261 60695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo05g00261 1251 SMART BRCT_7 204 283 IPR001357 -
Blo05g00261 1251 SMART BRCT_7 927 1006 IPR001357 -
Blo05g00261 1251 SMART BRCT_7 1044 1131 IPR001357 -
Blo05g00261 1251 Gene3D BRCT domain 1044 1146 IPR036420 -
Blo05g00261 1251 MobiDBLite consensus disorder prediction 796 829 - -
Blo05g00261 1251 Pfam twin BRCT domain 211 275 IPR001357 -
Blo05g00261 1251 Gene3D BRCT domain 928 1043 IPR036420 -
Blo05g00261 1251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1161 1250 IPR013083 -
Blo05g00261 1251 Coils Coil 736 756 - -
Blo05g00261 1251 MobiDBLite consensus disorder prediction 800 814 - -
Blo05g00261 1251 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 127 1228 IPR044254 -
Blo05g00261 1251 SUPERFAMILY FYVE/PHD zinc finger 1147 1230 IPR011011 -
Blo05g00261 1251 Gene3D BRCT domain 199 311 IPR036420 -
Blo05g00261 1251 SUPERFAMILY BRCT domain 932 1017 IPR036420 -
Blo05g00261 1251 MobiDBLite consensus disorder prediction 1231 1251 - -
Blo05g00261 1251 MobiDBLite consensus disorder prediction 600 620 - -
Blo05g00261 1251 MobiDBLite consensus disorder prediction 815 829 - -
Blo05g00261 1251 SUPERFAMILY BRCT domain 210 278 IPR036420 -
Blo05g00261 1251 SMART PHD_3 1180 1229 IPR001965 -
Blo05g00261 1251 CDD BRCT_TopBP1_rpt7 933 1005 - -
Blo05g00261 1251 ProSiteProfiles Zinc finger PHD-type profile. 1175 1231 IPR019787 -
Blo05g00261 1251 ProSiteProfiles BRCT domain profile. 211 278 IPR001357 -
Blo05g00261 1251 MobiDBLite consensus disorder prediction 1235 1251 - -
Blo05g00261 1251 MobiDBLite consensus disorder prediction 526 549 - -
Blo05g00261 1251 SUPERFAMILY BRCT domain 127 190 IPR036420 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00261 Blo-Chr5:2899685 Blo16g00458 Blo-Chr16:18168929 2.15E-18 dispersed
Blo16g00842 Blo-Chr16:35462181 Blo05g00261 Blo-Chr5:2899685 4.72E-06 dispersed
Blo05g00261 Blo-Chr5:2899685 Blo03g00130 Blo-Chr3:3765962 3.46E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo05g00261 K10728 - vvi:100257310 894.034