Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo05g00317 ATGTATCGTGTCCATGGGTTTCGAATTCCTAAACCTAATCAGGGTATTTCTTTGGCTTTTGCGATCGCCGACCATTGCTTTATTATGTTATATGCTTATGGCATGGTGAGAGAAGATGAAGTCATCGTGAAGAAAAGAGTAAAATATGAGGAAGAGGACGCGCCTACATATAATACGAAGCTACAGTACAATGGAAGGAACAGCGACGTGTCTGCGTTTTACAGGGCTCCAGTGGATCAAGCTTCGCACATGGAAATGGATGATTCGGACAGACAAGGATTTAAGTACGATTTTGCAGGCGGAAGCAGCGCTTTAAGCGAAGATGGTGTCGTTAAAGATCAAGATCGGTTGCTTCCTATCGCTAATGTCGGCAGGATCATGAAACAGATTTTGCCTCAGTCTGCTAAAGTATCTAAAGAAGCCAAGGAAACTATGCAAGAATGTGTGTCCGAGTTCATAAGCTTCGTCACCGGAGAAGCCTCGGATAAGTGCCGGAATGAGAAGAGGAAGACGCTCAACGGCGACGATGTCTGCTCTGCTATGGAGGTTCTGGGATTTGAAGATTATGCTAAGCCATTGAAGAGGTATTTGCTCAAGTATAGAGAGGTGGAGGAGGAGAGAGCTAAAAGTAAGATTGAAAATGAAGAAGAAGAATATAAGAGCAAGGGTTAA 672 43.75 MYRVHGFRIPKPNQGISLAFAIADHCFIMLYAYGMVREDEVIVKKRVKYEEEDAPTYNTKLQYNGRNSDVSAFYRAPVDQASHMEMDDSDRQGFKYDFAGGSSALSEDGVVKDQDRLLPIANVGRIMKQILPQSAKVSKEAKETMQECVSEFISFVTGEASDKCRNEKRKTLNGDDVCSAMEVLGFEDYAKPLKRYLLKYREVEEERAKSKIENEEEEYKSKG 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3591375 3597628 - BLOR15279 Blo05g00317 60751

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo05g00317 223 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 97 216 IPR027113 GO:0001228|GO:0006355|GO:0016602
Blo05g00317 223 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 117 181 IPR003958 -
Blo05g00317 223 ProSitePatterns NF-YB/HAP3 subunit signature. 148 164 IPR003956 GO:0005634|GO:0006355|GO:0043565
Blo05g00317 223 Gene3D Histone, subunit A 107 222 IPR009072 GO:0046982
Blo05g00317 223 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 97 216 - -
Blo05g00317 223 SUPERFAMILY Histone-fold 114 215 IPR009072 GO:0046982
Blo05g00317 223 PRINTS CCAAT-binding transcription factor subunit A signature 164 182 - -
Blo05g00317 223 PRINTS CCAAT-binding transcription factor subunit A signature 183 201 - -
Blo05g00317 223 PRINTS CCAAT-binding transcription factor subunit A signature 145 163 - -
Blo05g00317 223 Coils Coil 193 222 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo05g00317 K08065 NFYB, HAP3; nuclear transcription Y subunit beta - qsu:112003935 199.134
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00317 Blo-Chr5:3591375 Blo10g00864 Blo-Chr10:27339437 1.08E-46 dispersed
Blo05g00317 Blo-Chr5:3591375 Blo02g00141 Blo-Chr2:1233511 8.80E-47 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g243 Blo05g00317 . Bda04g00601 . . Bpe06g00510 . . . Cmo17g01087 . . . . . . . . . . . . . . Cla09g00572 Cam09g0608 Cec09g0592 Cco09g0586 Clacu09g0607 . Cre09g0581 Cone17ag0499 Cone20ag0927 . . Lsi02g02373 . . Cme01g02349 . . . . . . . . . . . . Cma17g01111 . . . Cpe12g00955 . . . . . . . . . . . . . . . . Chy01g01662 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo11g00227 BCT 532 669 CCAAT-HAP3 Transcription Factor Family AT5G47670 66.3 2.6e-51 199.1
Blo10g00864 . 17 182 CCAAT-HAP3 Transcription Factor Family AT5G47670 51.2 8.6e-39 157.5
Blo02g00141 . 12 116 CCAAT-HAP3 Transcription Factor Family AT5G47670 66.4 2.1e-37 152.9
Blo11g00227 BCT 514 653 CCAAT-HAP3 Transcription Factor Family AT1G21970 57.3 1.6e-45 179.9
Blo13g00735 . 9 136 CCAAT-HAP3 Transcription Factor Family AT1G21970 53.0 8.2e-37 151.0
Blo15g00440 CCT,ECH 1 169 CCAAT-HAP3 Transcription Factor Family AT4G14540 70.0 2.6e-58 221.9
Blo02g00141 . 1 167 CCAAT-HAP3 Transcription Factor Family AT4G14540 75.3 1.4e-56 216.1
Blo10g00864 . 1 157 CCAAT-HAP3 Transcription Factor Family AT4G14540 71.3 1.5e-53 206.1
Blo03g00464 . 1 134 CCAAT-HAP3 Transcription Factor Family AT4G14540 75.4 8.2e-49 190.3
Blo04g00306 . 648 763 CCAAT-HAP3 Transcription Factor Family AT4G14540 73.3 8.0e-44 173.7
Blo13g00735 . 11 126 CCAAT-HAP3 Transcription Factor Family AT4G14540 73.3 8.0e-44 173.7
Blo12g00456 . 22 130 CCAAT-HAP3 Transcription Factor Family AT4G14540 75.2 4.0e-43 171.4
Blo04g00929 . 19 117 CCAAT-HAP3 Transcription Factor Family AT4G14540 81.8 2.6e-42 168.7
Blo11g00227 BCT 544 643 CCAAT-HAP3 Transcription Factor Family AT4G14540 69.0 2.5e-37 152.1
Blo13g00735 . 1 116 CCAAT-HAP3 Transcription Factor Family AT2G38880 82.8 1.4e-50 196.1
Blo04g00306 . 638 753 CCAAT-HAP3 Transcription Factor Family AT2G38880 81.9 1.2e-49 193.0
Blo12g00456 . 1 114 CCAAT-HAP3 Transcription Factor Family AT2G38880 81.6 6.0e-49 190.7
Blo15g00440 CCT,ECH 1 111 CCAAT-HAP3 Transcription Factor Family AT2G38880 73.0 8.4e-43 170.2
Blo10g00864 . 19 112 CCAAT-HAP3 Transcription Factor Family AT2G38880 81.9 3.2e-42 168.3
Blo02g00141 . 21 111 CCAAT-HAP3 Transcription Factor Family AT2G38880 83.5 3.2e-42 168.3
Blo03g00464 . 23 116 CCAAT-HAP3 Transcription Factor Family AT2G38880 80.9 5.4e-42 167.5
Blo04g00929 . 9 112 CCAAT-HAP3 Transcription Factor Family AT2G38880 69.5 6.6e-40 160.6
Blo03g00464 . 21 120 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.0 3.4e-39 158.3
Blo05g00317 . 110 207 CCAAT-HAP3 Transcription Factor Family AT2G47810 77.6 7.7e-39 157.1
Blo10g00864 . 21 116 CCAAT-HAP3 Transcription Factor Family AT2G47810 74.0 2.2e-38 155.6
Blo15g00440 CCT,ECH 21 116 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.9 8.5e-38 153.7
Blo02g00141 . 21 116 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.9 1.1e-37 153.3
Blo12g00456 . 1 156 CCAAT-HAP3 Transcription Factor Family AT2G37060 74.7 3.4e-56 214.9
Blo13g00735 . 1 133 CCAAT-HAP3 Transcription Factor Family AT2G37060 79.7 1.1e-54 209.9
Blo04g00306 . 648 770 CCAAT-HAP3 Transcription Factor Family AT2G37060 83.3 1.4e-54 209.5
Blo15g00440 CCT,ECH 6 134 CCAAT-HAP3 Transcription Factor Family AT2G37060 69.8 1.6e-45 179.5
Blo03g00464 . 1 126 CCAAT-HAP3 Transcription Factor Family AT2G37060 67.7 2.7e-45 178.7
Blo02g00141 . 6 115 CCAAT-HAP3 Transcription Factor Family AT2G37060 79.1 4.5e-45 177.9
Blo10g00864 . 17 144 CCAAT-HAP3 Transcription Factor Family AT2G37060 66.2 2.3e-44 175.6
Blo04g00929 . 22 114 CCAAT-HAP3 Transcription Factor Family AT2G37060 75.3 1.2e-37 153.3
Blo15g00440 CCT,ECH 1 122 CCAAT-HAP3 Transcription Factor Family AT2G13570 70.5 1.5e-45 179.9
Blo02g00141 . 9 122 CCAAT-HAP3 Transcription Factor Family AT2G13570 75.9 1.9e-45 179.5
Blo03g00464 . 7 120 CCAAT-HAP3 Transcription Factor Family AT2G13570 71.1 1.4e-43 173.3
Blo04g00929 . 3 120 CCAAT-HAP3 Transcription Factor Family AT2G13570 72.0 1.4e-43 173.3
Blo10g00864 . 21 117 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 2.0e-42 169.5
Blo12g00456 . 24 119 CCAAT-HAP3 Transcription Factor Family AT2G13570 78.1 1.9e-40 162.9
Blo04g00306 . 663 757 CCAAT-HAP3 Transcription Factor Family AT2G13570 74.7 1.2e-39 160.2
Blo13g00735 . 26 120 CCAAT-HAP3 Transcription Factor Family AT2G13570 74.7 1.2e-39 160.2
Blo05g00317 . 112 210 CCAAT-HAP3 Transcription Factor Family AT2G13570 70.7 1.3e-36 150.2
Blo10g00864 . 1 140 CCAAT-HAP3 Transcription Factor Family AT5G47640 73.8 4.7e-51 198.0
Blo15g00440 CCT,ECH 1 121 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.2 1.0e-50 196.8
Blo02g00141 . 1 121 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.4 2.0e-49 192.6
Blo03g00464 . 1 134 CCAAT-HAP3 Transcription Factor Family AT5G47640 72.6 4.8e-48 188.0
Blo04g00306 . 663 773 CCAAT-HAP3 Transcription Factor Family AT5G47640 74.4 2.7e-43 172.2
Blo13g00735 . 26 136 CCAAT-HAP3 Transcription Factor Family AT5G47640 74.4 2.7e-43 172.2
Blo12g00456 . 19 132 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.7 2.3e-42 169.1
Blo04g00929 . 17 126 CCAAT-HAP3 Transcription Factor Family AT5G47640 73.6 2.6e-41 165.6
Blo12g00456 . 16 156 CCAAT-HAP3 Transcription Factor Family AT3G53340 80.4 6.2e-58 220.7
Blo04g00306 . 638 794 CCAAT-HAP3 Transcription Factor Family AT3G53340 72.0 3.8e-55 211.5
Blo13g00735 . 1 133 CCAAT-HAP3 Transcription Factor Family AT3G53340 78.8 2.4e-54 208.8
Blo15g00440 CCT,ECH 6 138 CCAAT-HAP3 Transcription Factor Family AT3G53340 68.4 4.6e-45 177.9
Blo02g00141 . 6 124 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.1 7.9e-45 177.2
Blo03g00464 . 7 135 CCAAT-HAP3 Transcription Factor Family AT3G53340 65.9 6.7e-44 174.1
Blo10g00864 . 17 115 CCAAT-HAP3 Transcription Factor Family AT3G53340 76.9 3.7e-42 168.3
Blo04g00929 . 22 120 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.7 4.2e-38 154.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005137 2 0 1 1 2 1 0 1 1 1 1 1 1 1 1 1 1 4 1 1 1 2 1 1 1 1 2 2 2 5 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12390 PF00808 CBFD_NFYB_HMF 2.70E-25 CL0012 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo05g00317 Blo_Chr05 FPKM 16.818056 14.423866 15.043597 14.528768 17.809334 19.823385 18.428139 31.175745 35.730976 31.906937