Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo05g00317 ATGTATCGTGTCCATGGGTTTCGAATTCCTAAACCTAATCAGGGTATTTCTTTGGCTTTTGCGATCGCCGACCATTGCTTTATTATGTTATATGCTTATGGCATGGTGAGAGAAGATGAAGTCATCGTGAAGAAAAGAGTAAAATATGAGGAAGAGGACGCGCCTACATATAATACGAAGCTACAGTACAATGGAAGGAACAGCGACGTGTCTGCGTTTTACAGGGCTCCAGTGGATCAAGCTTCGCACATGGAAATGGATGATTCGGACAGACAAGGATTTAAGTACGATTTTGCAGGCGGAAGCAGCGCTTTAAGCGAAGATGGTGTCGTTAAAGATCAAGATCGGTTGCTTCCTATCGCTAATGTCGGCAGGATCATGAAACAGATTTTGCCTCAGTCTGCTAAAGTATCTAAAGAAGCCAAGGAAACTATGCAAGAATGTGTGTCCGAGTTCATAAGCTTCGTCACCGGAGAAGCCTCGGATAAGTGCCGGAATGAGAAGAGGAAGACGCTCAACGGCGACGATGTCTGCTCTGCTATGGAGGTTCTGGGATTTGAAGATTATGCTAAGCCATTGAAGAGGTATTTGCTCAAGTATAGAGAGGTGGAGGAGGAGAGAGCTAAAAGTAAGATTGAAAATGAAGAAGAAGAATATAAGAGCAAGGGTTAA 672 43.75 MYRVHGFRIPKPNQGISLAFAIADHCFIMLYAYGMVREDEVIVKKRVKYEEEDAPTYNTKLQYNGRNSDVSAFYRAPVDQASHMEMDDSDRQGFKYDFAGGSSALSEDGVVKDQDRLLPIANVGRIMKQILPQSAKVSKEAKETMQECVSEFISFVTGEASDKCRNEKRKTLNGDDVCSAMEVLGFEDYAKPLKRYLLKYREVEEERAKSKIENEEEEYKSKG 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3591375 3597628 - BLOR15279 Blo05g00317 60751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo05g00317 223 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 97 216 IPR027113 GO:0001228|GO:0006355|GO:0016602
Blo05g00317 223 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 117 181 IPR003958 -
Blo05g00317 223 ProSitePatterns NF-YB/HAP3 subunit signature. 148 164 IPR003956 GO:0005634|GO:0006355|GO:0043565
Blo05g00317 223 Gene3D Histone, subunit A 107 222 IPR009072 GO:0046982
Blo05g00317 223 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 97 216 - -
Blo05g00317 223 SUPERFAMILY Histone-fold 114 215 IPR009072 GO:0046982
Blo05g00317 223 PRINTS CCAAT-binding transcription factor subunit A signature 164 182 - -
Blo05g00317 223 PRINTS CCAAT-binding transcription factor subunit A signature 183 201 - -
Blo05g00317 223 PRINTS CCAAT-binding transcription factor subunit A signature 145 163 - -
Blo05g00317 223 Coils Coil 193 222 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00317 Blo-Chr5:3591375 Blo10g00864 Blo-Chr10:27339437 1.08E-46 dispersed
Blo05g00317 Blo-Chr5:3591375 Blo02g00141 Blo-Chr2:1233511 8.80E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12390 PF00808 CBFD_NFYB_HMF 2.70E-25 CL0012 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo05g00317 K08065 - qsu:112003935 199.134