Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo05g00342 ATGTCTTCCTACTGTTTCTTTTTTCTCGCTCTAGGACTGTCCTTTTCGCTTTTTTCTGTGCCTGCTCTCTCCCAAAACGACACTGCTCAATGCCCCCTCGACTTCTCGATCCTCCGCCGGATCGTCCAGAGCTCCGGCAGCCCTTCCTCCGACGTCGCCATTGAATGCCAGTATATTCGTCAGGGCCTTCGACTCGTGGAGTCCCAATATCTTCAACTCACTGGCTCGTTTCTTCCTCCTGTTAACTCGTCTGAGTCTTGCTGGGACTCGTACGATTCCCTAATTAATAACGTTTCCGGATCCAATTTCGATATTCGTCGCTCTTGTGGATTTCAAACAAGCTGGATTTCTTATGGCTGTATGAACATCACTACCAGAGCGGAGTTCGAGAAGATCGTTCCTAAGGAGACCCTCGATAACGTCGTTGCGAATTGCAACCAATCTCTTGACAACAGTTCTCCTTGTGCTTCCTGTACAACGAGTTTGTCGATCTTGCAGGCATCGTATTTGACGGGATCATCAGTCGGCAACGTATCGGATTGCACTGCGTATCCGTCCATATACGCTGCCGCCTTCGCCAACTCATTTGGTCCAACGGACAGAGGGACGGCCCAGTGCTTGTTCTCCTTGGATTTTTCGTCCTCCGAGTCAAAAAACAAGAGGCGGAAGGTGATGATTTTAGGGTTTTCAATTGGCTGTGGAATTGGGATCTTAATAGTGACTCTGGGGAGCTGGTTTTTATGGCGGAAAATGAGGGCATGGAGGAAGGGAAGGAGAAGGAGGGAAGAAATACAGAGAGTAGAGACGAGTTTAGCCTCTGGATTGGAGTCAATTCGTGACAGCACAACTCTGGTAAGATTCACCTACGAAGAAATCAAGAAAGCAACTAAGAATTTCTCCAGGGACTGTATAATTGGAAAAGGAGGGTACGGTAATGTCTACAAGGGCGTGTTGGAAGACGGCTCGGAAGTAGCCATGAAGAGGTTCAAGAATTGCTCGGCTGCAGGCGATGCCAATTTCGCCCACGAAGTGGAGGTCATCGCCAGCATTCGACACGTAAACCTCGTTAGCTTAAGAGGGTATTGCATAGCCACCACTCCTCTCGAGGGCCACCAACGGATAATCGTATGCGATCTGATGAAAAATGGTAGTCTACATGATCATTTATTCGGCCAATTCGATGATAAACTAACATGGCCGATCCGACAAAACATTGCCCTCGGAACGGCAAGAGGACTGGCCTATTTGCACTACGGAGCTCAGCCTGGCATAATCCACAGAGATATCAAGGCGAGCAACATACTCCTGGACGAAAATTTCGAGCCGAAAGTTGCAGATTTCGGGCTAGCCAAGTTCACACCAGAGGGAATGACTCATTTGAGCACAAGAGTGGCTGGAACCATGGGCTATGTGGCTCCAGAGTATGCTCTATACGGTCAATTAACTGAGAGAAGCGACGTGTACGGCTTCGGAGTGTTACTTCTCGAGCTATTGAGTGGGAGAAAGGCACTCACTGTGAATAATGACAACCAGCCGAGCTTGGTGACCGACTGGGCGTGGACATTGGTGAGGGAAGGAAATACTCTCGATGTGATCGAAGATGGAATTTCGGATTTAGGCCCTCCCGAGGCGATCGAGAAATTCATATTAATCGCAGTCCTTTGCTCTCACCCGCAGTTATATGCAAGGCCAACTATGGACCAGGTTGTGAAAATGTTGGAAACCGAGATGTCAGTTCCTTCAATTCCGGAGAGGCCGATTCCGATTGTGGCTCATATCGATGATATGGAGAGATCTATGAGTTCCAATGGATATTCTCAGCTCCCCAAGCATAGCTAG 1839 48.61 MSSYCFFFLALGLSFSLFSVPALSQNDTAQCPLDFSILRRIVQSSGSPSSDVAIECQYIRQGLRLVESQYLQLTGSFLPPVNSSESCWDSYDSLINNVSGSNFDIRRSCGFQTSWISYGCMNITTRAEFEKIVPKETLDNVVANCNQSLDNSSPCASCTTSLSILQASYLTGSSVGNVSDCTAYPSIYAAAFANSFGPTDRGTAQCLFSLDFSSSESKNKRRKVMILGFSIGCGIGILIVTLGSWFLWRKMRAWRKGRRRREEIQRVETSLASGLESIRDSTTLVRFTYEEIKKATKNFSRDCIIGKGGYGNVYKGVLEDGSEVAMKRFKNCSAAGDANFAHEVEVIASIRHVNLVSLRGYCIATTPLEGHQRIIVCDLMKNGSLHDHLFGQFDDKLTWPIRQNIALGTARGLAYLHYGAQPGIIHRDIKASNILLDENFEPKVADFGLAKFTPEGMTHLSTRVAGTMGYVAPEYALYGQLTERSDVYGFGVLLLELLSGRKALTVNNDNQPSLVTDWAWTLVREGNTLDVIEDGISDLGPPEAIEKFILIAVLCSHPQLYARPTMDQVVKMLETEMSVPSIPERPIPIVAHIDDMERSMSSNGYSQLPKHS 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3994794 3996632 + BLOR15304 Blo05g00342 60776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo05g00342 612 SMART serkin_6 299 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo05g00342 612 ProSiteProfiles Protein kinase domain profile. 299 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo05g00342 612 PANTHER OS01G0750732 PROTEIN 9 609 - -
Blo05g00342 612 ProSitePatterns Protein kinases ATP-binding region signature. 305 327 IPR017441 GO:0005524
Blo05g00342 612 Gene3D Phosphorylase Kinase; domain 1 260 378 - -
Blo05g00342 612 CDD STKc_IRAK 305 574 - -
Blo05g00342 612 SUPERFAMILY Protein kinase-like (PK-like) 276 574 IPR011009 -
Blo05g00342 612 Gene3D Transferase(Phosphotransferase) domain 1 380 581 - -
Blo05g00342 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 424 436 IPR008271 GO:0004672|GO:0006468
Blo05g00342 612 Pfam Protein kinase domain 302 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo05g00342 612 Coils Coil 610 612 - -
Blo05g00342 612 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RKF3-RELATED 9 609 - -
Blo05g00342 612 Pfam SPARK 26 178 IPR043891 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00304 Blo-Chr3:5943773 Blo05g00342 Blo-Chr5:3994794 1.39E-116 dispersed
Blo05g00342 Blo-Chr5:3994794 Blo14g00632 Blo-Chr14:12417568 2.61E-83 dispersed
Blo05g00342 Blo-Chr5:3994794 Blo01g01065 Blo-Chr1:36433864 4.90E-86 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84289 PF00069 Pkinase 9.30E-42 CL0016 Blo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo05g00342 - - jre:109010942 851.662