Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo05g00393 ATGGACCTGGAGCTTTCTGACCTTGATGGGTTTTTTGTTTCCAATCTGGTTTATCAGTGTCTCAAGTTCAAGACTGATCAGGCACAAGAAGCGAAGAAGATGGAGAAGCTTAACAATATTTTCTTCACTTTGATGGCTCGGGGTCCTGAAGGGGTTTCTTTAGACCTGTTTTTTCTTGCTGGAGCTCTAATGGAAGAGGTTGAGGAGGCTAACAGAGCAGCTGTTGAAAGCTGCCATAGATTATTAAGTCAATTAACTCAACCCCAAGATGAAGTACAGTACAGAAGTTTGATGGTGGAAACTGGGGAAACTATATCTAAGTTTAAGAAAGTTGCATCTATTCTGAACATTGGTTTGGGCCATGCAAAATCCAGAAAACTCAAGAAACTCCATACTGCTTTTCCTCAGACCATCTTTTTAGACAACCCTTATTGCAGATTAGACCATCAAAACAAAACCATCCAGCTTGATTCTCTGTGCCTCGGAACCCCATCGTTGGAGTTGAGCTCAAATGGGAAAACTCCTCTTCAACTTTCTCAGCAAACACCTCCTTCCCACTATCACTTCCTTCATCAACAGCATCAACAGAGGTTGTTGCTTCAGCAGCAGCAGATGAGTAATCAACAGGCAGAAATGATGTTTCGTAGGAGTAACAGTGCCTTAAACTTGAACTTTGATGGGTCTACTTGCACACCGACGATGTCATCGACGAGGTCCTTCATTTCTTCGCTGAGCGTTGATGGAAGTGTTGCCAATTTAGAAGGAAGTGCCTTCCATTTGATTGGGGCTGCTCGTTCATTGGACCAGACATCACAGCATAAGAGGAAGTGCTCTGCAAGGGGAGATGATGGGAGTGTTAAATGCGGAAGTAGTGGTAGATGCCACTGCTCCAAGAAGAGGAAACATAGGGTGAAAAGATCAATTAAAGTACCTGCCATTAGCAGCAAGCTTGCTGATATTCCTCCTGATGATTATTCATGGAGAAAATACGGCCAGAAGCCCATTAAGGGTTCTCCTCACCCAAGGGGGTATTACAAGTGTAGCAGCATGAGAGGCTGCCCGGCAAGGAAGCACGTGGAGAGATGCTTGGAAGACTCGTCGATGCTTGTAGTTACTTATGAAGGAGAGCATAACCACGCTAAGGTACCTTCTCAATCTGCAAATACTTGA 1170 44.27 MDLELSDLDGFFVSNLVYQCLKFKTDQAQEAKKMEKLNNIFFTLMARGPEGVSLDLFFLAGALMEEVEEANRAAVESCHRLLSQLTQPQDEVQYRSLMVETGETISKFKKVASILNIGLGHAKSRKLKKLHTAFPQTIFLDNPYCRLDHQNKTIQLDSLCLGTPSLELSSNGKTPLQLSQQTPPSHYHFLHQQHQQRLLLQQQQMSNQQAEMMFRRSNSALNLNFDGSTCTPTMSSTRSFISSLSVDGSVANLEGSAFHLIGAARSLDQTSQHKRKCSARGDDGSVKCGSSGRCHCSKKRKHRVKRSIKVPAISSKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEDSSMLVVTYEGEHNHAKVPSQSANT 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4849688 4854630 + BLOR15355 Blo05g00393 60827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo05g00393 389 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 65 389 IPR044810 GO:0003700
Blo05g00393 389 PANTHER WRKY DNA-BINDING PROTEIN 21-RELATED 65 389 - -
Blo05g00393 389 ProSiteProfiles WRKY domain profile. 316 379 IPR003657 GO:0003700|GO:0006355|GO:0043565
Blo05g00393 389 SUPERFAMILY Signal recognition particle alu RNA binding heterodimer, SRP9/14 19 48 IPR009018 GO:0006614|GO:0008312|GO:0048500
Blo05g00393 389 Coils Coil 191 211 - -
Blo05g00393 389 SMART WRKY_cls 321 381 IPR003657 GO:0003700|GO:0006355|GO:0043565
Blo05g00393 389 Gene3D WRKY domain 307 383 IPR036576 GO:0003700|GO:0006355|GO:0043565
Blo05g00393 389 Pfam WRKY DNA -binding domain 323 379 IPR003657 GO:0003700|GO:0006355|GO:0043565
Blo05g00393 389 Gene3D Signal recognition particle alu RNA binding heterodimer, srp9/1 13 52 IPR009018 GO:0006614|GO:0008312|GO:0048500
Blo05g00393 389 Pfam Plant zinc cluster domain 274 319 IPR018872 -
Blo05g00393 389 SUPERFAMILY WRKY DNA-binding domain 319 380 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00393 Blo-Chr5:4849688 Blo12g00965 Blo-Chr12:27764937 3.88E-59 dispersed
Blo06g00415 Blo-Chr6:23916959 Blo05g00393 Blo-Chr5:4849688 1.31E-13 transposed
Blo05g00393 Blo-Chr5:4849688 Blo06g00414 Blo-Chr6:23895579 4.65E-24 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12398 PF03106 WRKY 7.60E-26 CL0274 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo05g00393 - - jre:109020122 486.108